Wall clock time and date at job start Fri Apr 10 2020 18:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35779 * 117.00124 * 2 1 4 4 C 1.38023 * 123.47186 * 359.70879 * 3 2 1 5 5 C 1.33612 * 115.08246 * 179.76750 * 4 3 2 6 6 C 1.50704 * 124.42511 * 180.25527 * 5 4 3 7 7 S 1.70578 * 111.14900 * 0.48570 * 5 4 3 8 8 C 1.37269 * 123.47055 * 180.02562 * 3 2 1 9 9 C 1.41724 * 125.47638 * 359.97438 * 8 3 2 10 10 O 1.21776 * 119.99725 * 0.02562 * 9 8 3 11 11 N 1.34773 * 120.00036 * 180.02562 * 9 8 3 12 12 C 1.46499 * 120.00130 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.88584 * 34.29712 * 12 11 9 14 14 C 1.54907 * 111.00470 * 270.41979 * 12 11 9 15 15 N 1.47465 * 104.81274 * 204.94753 * 14 12 11 16 16 C 1.36942 * 125.63155 * 204.14714 * 15 14 12 17 17 H 1.07998 * 119.99566 * 359.93099 * 16 15 14 18 18 C 1.38810 * 119.99986 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00269 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47263 * 89.99355 * 20 18 16 22 22 H 1.48507 * 109.46749 * 209.99697 * 20 18 16 23 23 H 1.48501 * 109.47102 * 329.99478 * 20 18 16 24 24 C 1.47029 * 108.72339 * 24.06915 * 15 14 12 25 25 C 1.54316 * 107.26645 * 358.97453 * 24 15 14 26 26 H 1.09002 * 110.72106 * 96.17068 * 25 24 15 27 27 O 1.42902 * 110.87297 * 219.36951 * 25 24 15 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99810 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99931 * 1 2 3 31 31 H 1.07996 * 122.45488 * 359.97420 * 4 3 2 32 32 H 1.09001 * 109.47332 * 180.28561 * 6 5 4 33 33 H 1.08998 * 109.46726 * 300.28502 * 6 5 4 34 34 H 1.09002 * 109.47166 * 60.28539 * 6 5 4 35 35 H 0.97003 * 120.00542 * 0.02562 * 11 9 8 36 36 H 1.08999 * 110.36891 * 323.75156 * 14 12 11 37 37 H 1.09005 * 110.37082 * 86.07543 * 14 12 11 38 38 H 0.96998 * 120.00240 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.87774 * 239.55855 * 24 15 14 40 40 H 1.08999 * 109.87998 * 118.39377 * 24 15 14 41 41 H 0.96699 * 114.00033 * 293.61210 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 -0.0059 5 6 2.1390 3.5000 0.0000 6 6 1.6190 4.9145 0.0010 7 16 3.7924 3.0804 0.0000 8 6 3.4094 1.3644 -0.0005 9 6 4.3567 0.3103 -0.0006 10 8 3.9793 -0.8474 -0.0006 11 7 5.6753 0.5893 -0.0006 12 6 6.6546 -0.5003 -0.0012 13 1 6.2885 -1.3515 -0.5755 14 6 7.0180 -0.9211 1.4446 15 7 8.3628 -1.5166 1.3372 16 6 8.9050 -2.4246 2.2072 17 1 8.3352 -2.7616 3.0605 18 6 10.1872 -2.9112 1.9927 19 7 10.8817 -2.5002 0.9529 20 14 10.9271 -4.1492 3.1798 21 1 10.5974 -5.5253 2.7292 22 1 12.4021 -3.9801 3.2157 23 1 10.3701 -3.9264 4.5383 24 6 9.0243 -0.9757 0.1407 25 6 8.0264 -0.0150 -0.5395 26 1 8.2163 1.0152 -0.2381 27 8 8.0855 -0.1427 -1.9616 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2867 2.4659 -0.0113 32 1 2.4582 5.6101 0.0011 33 1 1.0112 5.0786 -0.8888 34 1 1.0116 5.0777 0.8912 35 1 5.9760 1.5115 -0.0002 36 1 7.0405 -0.0497 2.0990 37 1 6.3050 -1.6572 1.8161 38 1 11.7775 -2.8405 0.8028 39 1 9.2802 -1.7875 -0.5402 40 1 9.9244 -0.4326 0.4285 41 1 8.9230 0.1475 -2.3481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077775042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:45 Heat of formation + Delta-G solvation = -53.425968 kcal Electronic energy + Delta-G solvation = -25441.793448 eV Core-core repulsion = 21643.138766 eV Total energy + Delta-G solvation = -3798.654682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36748 -39.20296 -37.63935 -36.55475 -34.99842 -33.89387 -32.23801 -31.51982 -28.74408 -28.10709 -27.38601 -26.34800 -24.32724 -23.40984 -21.69626 -20.48236 -20.13391 -19.39631 -18.47497 -17.25403 -16.79740 -16.70953 -16.10423 -16.07648 -15.45206 -14.72721 -14.60433 -14.43978 -14.20745 -14.12485 -13.91256 -13.71863 -13.15274 -12.88674 -12.62299 -12.59850 -12.43660 -12.25785 -11.98426 -11.70969 -11.41315 -11.18739 -11.16689 -11.09397 -10.83185 -10.77670 -10.11829 -9.82957 -9.78169 -9.72099 -9.25606 -8.95252 -8.70338 -8.54981 -8.20563 -6.85448 -5.71147 -3.05224 0.32703 1.21890 1.55305 2.16215 3.30420 3.42719 3.46625 3.48671 3.51784 3.52874 4.23695 4.49282 4.69155 4.75674 4.81425 4.85065 4.93869 5.05277 5.12001 5.24651 5.28728 5.40942 5.49525 5.53121 5.56641 5.64964 5.74530 5.87589 5.93615 6.18547 6.21689 6.62727 6.72160 6.99066 7.10550 7.38392 7.52300 7.76373 7.82966 8.18012 8.22880 8.56036 9.20550 9.80553 10.44209 11.40729 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.002949 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.731639 B = 9493.073415 C =10080.660021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.269 6.269 3 C 0.190 3.810 4 C -0.220 4.220 5 C -0.166 4.166 6 C -0.087 4.087 7 S 0.225 5.775 8 C -0.320 4.320 9 C 0.593 3.407 10 O -0.520 6.520 11 N -0.717 5.717 12 C 0.142 3.858 13 H 0.105 0.895 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.226 4.226 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.925 5.925 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.056 0.944 27 O -0.562 6.562 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.148 0.852 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.390 0.610 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.195 17.507 -4.179 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.181 6.181 3 C 0.130 3.870 4 C -0.253 4.253 5 C -0.286 4.286 6 C -0.146 4.146 7 S 0.490 5.510 8 C -0.440 4.440 9 C 0.380 3.620 10 O -0.398 6.398 11 N -0.368 5.368 12 C 0.037 3.963 13 H 0.123 0.877 14 C 0.002 3.998 15 N -0.328 5.328 16 C -0.354 4.354 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.074 0.926 27 O -0.367 6.367 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.166 0.834 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.224 0.776 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.432 16.916 -4.064 25.345 hybrid contribution -0.476 -0.599 0.525 0.928 sum -18.908 16.317 -3.539 25.225 Atomic orbital electron populations 1.23173 0.78534 1.04412 1.01093 1.86368 1.20703 1.24047 1.86940 1.18212 0.90230 0.85351 0.93242 1.19911 1.01839 0.90679 1.12908 1.23941 0.99240 1.00462 1.04980 1.20447 1.01714 0.88858 1.03532 1.82989 1.02748 0.95945 1.69273 1.22760 0.95435 0.97897 1.27870 1.15507 0.81589 0.87726 0.77145 1.90888 1.79379 1.19992 1.49495 1.45802 1.05514 1.09489 1.76029 1.22216 0.86214 0.89786 0.98103 0.87723 1.21867 0.88632 0.96598 0.92659 1.44265 1.11158 1.49711 1.27672 1.19104 0.97301 1.15696 1.03327 0.90145 1.24808 0.96908 1.00393 0.98352 1.69923 1.11572 1.46786 1.28957 0.86068 0.78198 0.81066 0.80134 1.21517 1.21684 1.20642 1.21809 0.91963 0.94612 0.88730 1.23460 0.96274 0.98498 0.80965 0.92586 1.86479 1.40888 1.89236 1.20106 0.87852 0.92702 0.92662 0.83412 0.90875 0.90018 0.89996 0.77620 0.95858 0.93047 0.93708 0.92090 0.93312 0.77770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.94 101.05 1.00 1.21 16 2 O -0.27 -3.91 9.36 -36.57 -0.34 -4.25 16 3 C 0.19 2.58 6.70 -40.01 -0.27 2.31 16 4 C -0.22 -2.14 9.02 -41.28 -0.37 -2.52 16 5 C -0.17 -1.43 6.27 -35.93 -0.23 -1.65 16 6 C -0.09 -0.44 10.32 36.01 0.37 -0.07 16 7 S 0.22 2.27 21.92 -107.50 -2.36 -0.09 16 8 C -0.32 -4.72 6.28 -38.60 -0.24 -4.96 16 9 C 0.59 10.90 7.59 -14.93 -0.11 10.79 16 10 O -0.52 -11.65 15.53 -12.40 -0.19 -11.84 16 11 N -0.72 -12.31 5.20 -54.58 -0.28 -12.59 16 12 C 0.14 2.90 3.09 -65.78 -0.20 2.70 16 13 H 0.10 2.44 7.63 -51.93 -0.40 2.05 16 14 C 0.13 2.95 6.93 -2.51 -0.02 2.93 16 15 N -0.60 -15.91 3.40 -170.04 -0.58 -16.49 16 16 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -27.26 10.31 55.49 0.57 -26.69 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.15 3.78 5.15 -3.06 -0.02 3.76 16 25 C 0.07 1.32 3.96 -24.90 -0.10 1.22 16 26 H 0.06 0.95 8.00 -51.93 -0.42 0.54 16 27 O -0.56 -10.20 13.40 -35.23 -0.47 -10.67 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 30 H 0.05 0.38 7.89 -51.93 -0.41 -0.03 16 31 H 0.15 1.03 6.99 -52.49 -0.37 0.67 16 32 H 0.07 0.31 8.11 -51.93 -0.42 -0.12 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.39 5.53 7.51 -40.82 -0.31 5.23 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.06 1.67 7.30 -51.93 -0.38 1.30 16 40 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 41 H 0.38 5.14 9.12 45.56 0.42 5.56 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -36.58 355.79 -8.48 -45.06 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.74 Total: 5.98 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.43 Total: 8.74 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.29 Total: -55.77 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.01 Total: -26.77 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.36 Total: -0.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.58 -8.48 -45.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077775042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.366 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds