Wall clock time and date at job start Fri Apr 10 2020 18:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35779 * 117.00124 * 2 1 4 4 C 1.38023 * 123.47186 * 359.70879 * 3 2 1 5 5 C 1.33612 * 115.08246 * 179.76750 * 4 3 2 6 6 C 1.50704 * 124.42511 * 180.25527 * 5 4 3 7 7 S 1.70578 * 111.14900 * 0.48570 * 5 4 3 8 8 C 1.37269 * 123.47055 * 180.02562 * 3 2 1 9 9 C 1.41724 * 125.47638 * 359.97438 * 8 3 2 10 10 O 1.21776 * 119.99725 * 0.02562 * 9 8 3 11 11 N 1.34773 * 120.00036 * 180.02562 * 9 8 3 12 12 C 1.46499 * 120.00130 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.88584 * 34.29712 * 12 11 9 14 14 C 1.54907 * 111.00470 * 270.41979 * 12 11 9 15 15 N 1.47465 * 104.81274 * 204.94753 * 14 12 11 16 16 C 1.36942 * 125.63155 * 204.14714 * 15 14 12 17 17 H 1.07998 * 119.99566 * 359.93099 * 16 15 14 18 18 C 1.38810 * 119.99986 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00269 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47263 * 89.99355 * 20 18 16 22 22 H 1.48507 * 109.46749 * 209.99697 * 20 18 16 23 23 H 1.48501 * 109.47102 * 329.99478 * 20 18 16 24 24 C 1.47029 * 108.72339 * 24.06915 * 15 14 12 25 25 C 1.54316 * 107.26645 * 358.97453 * 24 15 14 26 26 H 1.09002 * 110.72106 * 96.17068 * 25 24 15 27 27 O 1.42902 * 110.87297 * 219.36951 * 25 24 15 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99810 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99931 * 1 2 3 31 31 H 1.07996 * 122.45488 * 359.97420 * 4 3 2 32 32 H 1.09001 * 109.47332 * 180.28561 * 6 5 4 33 33 H 1.08998 * 109.46726 * 300.28502 * 6 5 4 34 34 H 1.09002 * 109.47166 * 60.28539 * 6 5 4 35 35 H 0.97003 * 120.00542 * 0.02562 * 11 9 8 36 36 H 1.08999 * 110.36891 * 323.75156 * 14 12 11 37 37 H 1.09005 * 110.37082 * 86.07543 * 14 12 11 38 38 H 0.96998 * 120.00240 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.87774 * 239.55855 * 24 15 14 40 40 H 1.08999 * 109.87998 * 118.39377 * 24 15 14 41 41 H 0.96699 * 114.00033 * 293.61210 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 -0.0059 5 6 2.1390 3.5000 0.0000 6 6 1.6190 4.9145 0.0010 7 16 3.7924 3.0804 0.0000 8 6 3.4094 1.3644 -0.0005 9 6 4.3567 0.3103 -0.0006 10 8 3.9793 -0.8474 -0.0006 11 7 5.6753 0.5893 -0.0006 12 6 6.6546 -0.5003 -0.0012 13 1 6.2885 -1.3515 -0.5755 14 6 7.0180 -0.9211 1.4446 15 7 8.3628 -1.5166 1.3372 16 6 8.9050 -2.4246 2.2072 17 1 8.3352 -2.7616 3.0605 18 6 10.1872 -2.9112 1.9927 19 7 10.8817 -2.5002 0.9529 20 14 10.9271 -4.1492 3.1798 21 1 10.5974 -5.5253 2.7292 22 1 12.4021 -3.9801 3.2157 23 1 10.3701 -3.9264 4.5383 24 6 9.0243 -0.9757 0.1407 25 6 8.0264 -0.0150 -0.5395 26 1 8.2163 1.0152 -0.2381 27 8 8.0855 -0.1427 -1.9616 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2867 2.4659 -0.0113 32 1 2.4582 5.6101 0.0011 33 1 1.0112 5.0786 -0.8888 34 1 1.0116 5.0777 0.8912 35 1 5.9760 1.5115 -0.0002 36 1 7.0405 -0.0497 2.0990 37 1 6.3050 -1.6572 1.8161 38 1 11.7775 -2.8405 0.8028 39 1 9.2802 -1.7875 -0.5402 40 1 9.9244 -0.4326 0.4285 41 1 8.9230 0.1475 -2.3481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077775042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:45 Heat of formation + Delta-G solvation = -82.297481 kcal Electronic energy + Delta-G solvation = -25443.045411 eV Core-core repulsion = 21643.138766 eV Total energy + Delta-G solvation = -3799.906644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46506 -40.54921 -39.24895 -37.36754 -36.70277 -35.56076 -33.75074 -32.79816 -30.38611 -29.22020 -28.68215 -27.63947 -26.19861 -24.17817 -23.00136 -22.27629 -21.82460 -20.43601 -19.55170 -19.00993 -18.32951 -17.92506 -17.33334 -17.09726 -16.96515 -16.34106 -15.98019 -15.73275 -15.60818 -15.10887 -14.88977 -14.71399 -14.51774 -14.43455 -14.25467 -13.79872 -13.54380 -13.28790 -13.17837 -13.10429 -12.99869 -12.75994 -12.74274 -12.43064 -12.09416 -11.90611 -11.88834 -11.80350 -11.56437 -11.22220 -10.89108 -10.78092 -10.26359 -9.69555 -9.06885 -8.98354 -7.89504 -5.27143 -0.55474 0.39881 0.75779 1.28752 1.44933 1.47920 1.56309 2.07897 2.22727 2.47768 2.49586 3.10390 3.30909 3.51915 3.57105 3.82295 4.00085 4.02175 4.13795 4.18233 4.24884 4.35772 4.36683 4.42146 4.53075 4.62418 4.70879 4.77399 4.79225 4.91393 4.97298 5.09635 5.24337 5.34644 5.40345 5.43443 5.64256 6.11950 6.26098 6.49414 6.86241 7.03551 7.20711 7.67157 8.30473 9.20384 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.002949 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.731639 B = 9493.073415 C =10080.660021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.311 6.311 3 C 0.191 3.809 4 C -0.233 4.233 5 C -0.139 4.139 6 C -0.090 4.090 7 S 0.261 5.739 8 C -0.382 4.382 9 C 0.591 3.409 10 O -0.577 6.577 11 N -0.705 5.705 12 C 0.155 3.845 13 H 0.069 0.931 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.251 4.251 17 H 0.080 0.920 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.288 1.288 22 H -0.287 1.287 23 H -0.269 1.269 24 C 0.163 3.837 25 C 0.092 3.908 26 H 0.095 0.905 27 O -0.568 6.568 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.178 0.822 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.407 0.593 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.250 0.750 39 H 0.022 0.978 40 H 0.030 0.970 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.805 20.698 -3.959 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.223 6.223 3 C 0.130 3.870 4 C -0.264 4.264 5 C -0.260 4.260 6 C -0.148 4.148 7 S 0.526 5.474 8 C -0.501 4.501 9 C 0.382 3.618 10 O -0.459 6.459 11 N -0.357 5.357 12 C 0.049 3.951 13 H 0.087 0.913 14 C 0.006 3.994 15 N -0.349 5.349 16 C -0.379 4.379 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.215 1.215 22 H -0.213 1.213 23 H -0.194 1.194 24 C 0.037 3.963 25 C 0.032 3.968 26 H 0.113 0.887 27 O -0.376 6.376 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.196 0.804 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.244 0.756 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.051 20.162 -3.856 28.696 hybrid contribution -0.112 -1.512 0.426 1.574 sum -20.163 18.651 -3.430 27.680 Atomic orbital electron populations 1.23486 0.75879 1.05588 1.03053 1.86309 1.23735 1.25550 1.86712 1.18695 0.90284 0.86316 0.91726 1.20078 1.03333 0.89223 1.13814 1.24535 0.98266 1.02115 1.01082 1.20679 1.02674 0.86198 1.05260 1.82735 1.03791 0.91975 1.68882 1.22638 0.95377 0.99792 1.32267 1.16028 0.82039 0.88036 0.75705 1.90841 1.80191 1.22554 1.52297 1.45541 1.04829 1.09421 1.75933 1.21715 0.87415 0.89993 0.96017 0.91291 1.21909 0.86645 0.96364 0.94522 1.44533 1.12609 1.49820 1.27952 1.19447 0.97864 1.16618 1.03977 0.90235 1.25672 0.97263 1.02288 1.00174 1.70124 1.11534 1.47634 1.30285 0.85021 0.77185 0.78267 0.78470 1.21493 1.21338 1.19359 1.21620 0.92824 0.94117 0.87705 1.23145 0.93548 0.98840 0.81316 0.88737 1.86445 1.42586 1.89533 1.19040 0.87288 0.90608 0.90668 0.80437 0.89629 0.88077 0.88137 0.75592 0.94055 0.95126 0.94042 0.95976 0.95142 0.75276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.94 113.37 1.13 1.36 16 2 O -0.31 -9.17 9.36 -74.32 -0.70 -9.87 16 3 C 0.19 5.09 6.70 21.99 0.15 5.24 16 4 C -0.23 -3.87 9.02 21.17 0.19 -3.68 16 5 C -0.14 -1.88 6.27 24.64 0.15 -1.73 16 6 C -0.09 -0.45 10.32 71.24 0.74 0.28 16 7 S 0.26 4.65 21.92 -56.49 -1.24 3.41 16 8 C -0.38 -11.22 6.28 22.90 0.14 -11.08 16 9 C 0.59 22.51 7.59 85.10 0.65 23.15 16 10 O -0.58 -27.57 15.53 12.16 0.19 -27.38 16 11 N -0.71 -24.41 5.20 -444.78 -2.31 -26.73 16 12 C 0.16 6.53 3.09 46.38 0.14 6.67 16 13 H 0.07 3.42 7.63 -2.38 -0.02 3.40 16 14 C 0.13 6.22 6.93 86.85 0.60 6.82 16 15 N -0.62 -34.07 3.40 -691.88 -2.35 -36.42 16 16 C -0.25 -14.80 10.28 84.03 0.86 -13.94 16 17 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 19 N -0.95 -57.32 10.31 21.65 0.22 -57.09 16 20 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.16 8.22 5.15 86.73 0.45 8.67 16 25 C 0.09 3.54 3.96 31.78 0.13 3.67 16 26 H 0.10 2.99 8.00 -2.39 -0.02 2.97 16 27 O -0.57 -20.27 13.40 -148.98 -2.00 -22.26 16 28 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 0.87 7.87 -2.39 -0.02 0.85 16 30 H 0.07 0.87 7.89 -2.38 -0.02 0.85 16 31 H 0.18 1.77 6.99 -2.91 -0.02 1.75 16 32 H 0.08 0.28 8.11 -2.39 -0.02 0.26 16 33 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.41 11.08 7.51 -92.71 -0.70 10.39 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.02 1.27 7.30 -2.39 -0.02 1.25 16 40 H 0.03 1.63 7.51 -2.39 -0.02 1.61 16 41 H 0.40 10.36 9.12 -74.06 -0.68 9.68 16 Total: -1.00 -84.90 355.79 -0.65 -85.56 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.29 Total: 19.40 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 5.79 Total: 22.36 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -4.44 Total: -120.24 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -2.50 Total: -59.50 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.24 Total: 3.41 kcal Total: -84.90 -0.65 -85.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077775042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.258 kcal (2) G-P(sol) polarization free energy of solvation -84.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds