Wall clock time and date at job start Fri Apr 10 2020 18:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47101 * 239.99632 * 3 2 1 5 5 H 1.48496 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47291 * 119.99764 * 3 2 1 7 7 C 1.38809 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00238 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.46774 * 125.36269 * 359.97221 * 9 7 2 11 11 C 1.53910 * 107.62783 * 178.80887 * 10 9 7 12 12 H 1.08997 * 109.52434 * 101.57127 * 11 10 9 13 13 O 1.40855 * 110.30752 * 221.41171 * 11 10 9 14 14 C 1.41321 * 118.31094 * 68.00848 * 13 11 10 15 15 C 1.51960 * 111.60721 * 56.89231 * 14 13 11 16 16 N 1.44952 * 111.93983 * 319.69653 * 15 14 13 17 17 C 1.34774 * 117.34142 * 203.78173 * 16 15 14 18 18 O 1.21721 * 120.00623 * 176.13734 * 17 16 15 19 19 C 1.46505 * 119.99823 * 356.13823 * 17 16 15 20 20 O 1.34985 * 126.00366 * 4.15438 * 19 17 16 21 21 C 1.33944 * 109.39986 * 179.82637 * 20 19 17 22 22 C 1.35072 * 108.82022 * 0.43584 * 21 20 19 23 23 C 1.36704 * 126.01081 * 184.46134 * 19 17 16 24 24 Cl 1.73611 * 126.66586 * 0.03435 * 23 19 17 25 25 C 1.44551 * 125.32565 * 23.75860 * 16 15 14 26 26 H 1.08998 * 109.30112 * 106.18033 * 25 16 15 27 27 C 1.46870 * 125.36305 * 179.97438 * 9 7 2 28 28 H 0.97008 * 119.99829 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.82172 * 59.28760 * 10 9 7 30 30 H 1.08992 * 109.89401 * 298.37728 * 10 9 7 31 31 H 1.08995 * 109.05117 * 296.34201 * 14 13 11 32 32 H 1.09002 * 109.05275 * 177.44153 * 14 13 11 33 33 H 1.09001 * 108.98411 * 199.05687 * 15 14 13 34 34 H 1.09002 * 108.98668 * 80.33152 * 15 14 13 35 35 H 1.07996 * 125.59042 * 180.21068 * 21 20 19 36 36 H 1.08003 * 126.43576 * 179.73323 * 22 21 20 37 37 H 1.09006 * 110.06774 * 317.03109 * 27 9 7 38 38 H 1.09002 * 110.06849 * 78.55517 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1359 -2.5252 0.0006 11 6 -0.4629 -4.0288 -0.0299 12 1 -0.7397 -4.3618 0.9704 13 8 -1.5366 -4.2779 -0.9070 14 6 -1.3294 -4.0857 -2.2916 15 6 -0.1715 -4.9247 -2.8059 16 7 0.9380 -4.9461 -1.8734 17 6 2.1615 -5.2109 -2.3729 18 8 3.1372 -5.1717 -1.6463 19 6 2.3170 -5.5459 -3.7907 20 8 1.3360 -5.5474 -4.7179 21 6 1.8464 -5.9003 -5.9050 22 6 3.1672 -6.1415 -5.7571 23 6 3.4799 -5.9175 -4.4058 24 17 5.0398 -6.0818 -3.6617 25 6 0.8394 -4.7060 -0.4514 26 1 0.9508 -5.6501 0.0819 27 6 1.9377 -3.7230 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5528 -2.0383 -0.8810 30 1 -0.5506 -2.0749 0.9023 31 1 -1.1158 -3.0330 -2.4766 32 1 -2.2362 -4.3632 -2.8290 33 1 0.1708 -4.5127 -3.7552 34 1 -0.5179 -5.9454 -2.9684 35 1 1.2920 -5.9823 -6.8281 36 1 3.8538 -6.4490 -6.5320 37 1 2.7746 -3.7507 -0.6973 38 1 2.2783 -3.9783 1.0040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083184973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:50 Heat of formation + Delta-G solvation = -19.787861 kcal Electronic energy + Delta-G solvation = -26882.889678 eV Core-core repulsion = 22947.816854 eV Total energy + Delta-G solvation = -3935.072825 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.92775 -42.04393 -39.76719 -37.75568 -37.62638 -36.30710 -34.38959 -33.91600 -31.77924 -31.22454 -29.60121 -28.91252 -26.63850 -24.82834 -24.46957 -23.07408 -22.41686 -21.46088 -20.49573 -19.18504 -18.87964 -18.33288 -17.79112 -17.65724 -16.97615 -16.68641 -16.34842 -16.12531 -15.77886 -15.62947 -15.28440 -14.99153 -14.58306 -14.32677 -14.17810 -14.01620 -13.85039 -13.56957 -13.40721 -13.00264 -12.88400 -12.79487 -12.47858 -12.30022 -12.19246 -11.97242 -11.85646 -11.67047 -11.01181 -10.75581 -10.72896 -10.47811 -9.86715 -9.56947 -8.89897 -7.88653 -5.24452 -0.20736 0.88091 1.21575 1.41330 1.44609 1.50242 1.51543 1.89037 1.96541 2.45187 2.75568 3.20905 3.29161 3.55821 3.66216 3.69460 3.70591 3.89084 4.05688 4.15832 4.18999 4.29536 4.35412 4.51797 4.54252 4.70068 4.79204 4.82827 4.97017 5.03689 5.17572 5.38616 5.46313 5.55372 5.62904 5.65551 6.07095 6.15440 6.37271 6.86160 7.07111 7.72847 8.34511 9.20403 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.004906 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.282849 B = 5706.273007 C = 6671.587990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.619 5.619 10 C 0.164 3.836 11 C 0.085 3.915 12 H 0.132 0.868 13 O -0.370 6.370 14 C 0.056 3.944 15 C 0.074 3.926 16 N -0.580 5.580 17 C 0.580 3.420 18 O -0.525 6.525 19 C -0.088 4.088 20 O -0.146 6.146 21 C 0.031 3.969 22 C -0.224 4.224 23 C -0.058 4.058 24 Cl -0.023 7.023 25 C 0.121 3.879 26 H 0.099 0.901 27 C 0.105 3.895 28 H 0.249 0.751 29 H 0.024 0.976 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.149 0.851 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.272 0.728 36 H 0.192 0.808 37 H 0.074 0.926 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -16.347 -14.977 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.346 5.346 10 C 0.038 3.962 11 C 0.026 3.974 12 H 0.150 0.850 13 O -0.287 6.287 14 C -0.021 4.021 15 C -0.047 4.047 16 N -0.312 5.312 17 C 0.369 3.631 18 O -0.405 6.405 19 C -0.141 4.141 20 O -0.042 6.042 21 C -0.037 4.037 22 C -0.243 4.243 23 C -0.088 4.088 24 Cl 0.006 6.994 25 C 0.017 3.983 26 H 0.117 0.883 27 C -0.020 4.020 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.167 0.833 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.288 0.712 36 H 0.209 0.791 37 H 0.091 0.909 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.893 -16.109 -14.336 21.583 hybrid contribution 1.169 1.360 0.268 1.814 sum 0.276 -14.748 -14.067 20.383 Atomic orbital electron populations 1.70157 1.06013 1.25413 1.58008 1.25581 0.96667 1.00710 1.02295 0.85182 0.77254 0.78955 0.78120 1.20714 1.21353 1.20345 1.19298 0.90645 0.83768 1.43548 0.91012 1.44456 1.02033 1.00970 1.87153 1.21426 0.84142 0.91548 0.99056 1.22758 0.85438 0.94819 0.94418 0.85009 1.86893 1.36426 1.88463 1.16905 1.22504 0.99710 0.98138 0.81752 1.22099 0.87175 1.03048 0.92418 1.46620 1.07965 1.68472 1.08155 1.17050 0.83453 0.77959 0.84674 1.90798 1.39319 1.52269 1.58097 1.21433 0.87760 1.14534 0.90359 1.84458 1.34833 1.67154 1.17744 1.25572 0.93835 0.95648 0.88685 1.22022 0.98152 1.09987 0.94175 1.21684 0.87738 1.04277 0.95150 1.98383 1.23000 1.95811 1.82168 1.21598 0.97105 0.99007 0.80622 0.88325 1.22205 0.96779 0.84047 0.98997 0.94218 0.95746 0.96552 0.95329 0.83306 0.87836 0.88366 0.71206 0.79107 0.90894 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 10.26 21.65 0.22 -57.62 16 2 C -0.06 -3.49 5.48 84.86 0.47 -3.03 16 3 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.24 -14.53 10.25 84.03 0.86 -13.66 16 8 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -33.78 3.39 -696.32 -2.36 -36.14 16 10 C 0.16 8.32 5.02 86.63 0.43 8.75 16 11 C 0.09 3.27 3.83 30.81 0.12 3.39 16 12 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 13 O -0.37 -12.69 10.24 -146.20 -1.50 -14.19 16 14 C 0.06 1.59 6.72 71.64 0.48 2.07 16 15 C 0.07 1.95 5.26 86.33 0.45 2.41 16 16 N -0.58 -19.81 3.09 -811.32 -2.51 -22.32 16 17 C 0.58 20.70 7.14 86.40 0.62 21.32 16 18 O -0.53 -21.80 12.38 -4.42 -0.05 -21.86 16 19 C -0.09 -2.50 6.71 24.07 0.16 -2.34 16 20 O -0.15 -2.92 7.07 -5.89 -0.04 -2.96 16 21 C 0.03 0.36 12.07 67.09 0.81 1.17 16 22 C -0.22 -3.55 10.88 22.09 0.24 -3.31 16 23 C -0.06 -1.51 6.75 22.46 0.15 -1.35 16 24 Cl -0.02 -0.65 27.85 -2.72 -0.08 -0.72 16 25 C 0.12 4.56 3.42 45.66 0.16 4.71 16 26 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 27 C 0.10 4.89 6.30 86.70 0.55 5.44 16 28 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 29 H 0.02 1.38 5.74 -2.38 -0.01 1.37 16 30 H 0.02 0.93 7.49 -2.39 -0.02 0.91 16 31 H 0.03 1.02 6.81 -2.39 -0.02 1.00 16 32 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.10 2.56 5.23 -2.39 -0.01 2.54 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.27 -0.18 8.06 -2.91 -0.02 -0.20 16 36 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.07 3.69 4.75 -15.72 -0.07 3.62 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.00 317.97 2.26 -75.74 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.05 Total: 4.98 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 5.50 Total: 25.57 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -4.64 Total: -116.08 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.59 Total: -39.01 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.72 kcal Total: -78.00 2.26 -75.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083184973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.952 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds