Wall clock time and date at job start Fri Apr 10 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35783 * 117.00101 * 2 1 4 4 C 1.38026 * 123.47233 * 0.02562 * 3 2 1 5 5 C 1.33614 * 115.08545 * 179.97438 * 4 3 2 6 6 C 1.50693 * 124.42435 * 180.02562 * 5 4 3 7 7 S 1.70578 * 111.14359 * 359.72664 * 5 4 3 8 8 C 1.37271 * 123.46837 * 180.02562 * 3 2 1 9 9 C 1.41717 * 125.47684 * 0.02562 * 8 3 2 10 10 O 1.21774 * 120.00212 * 0.02562 * 9 8 3 11 11 N 1.34784 * 119.99921 * 179.97438 * 9 8 3 12 12 C 1.46493 * 119.99855 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.92002 * 31.10160 * 12 11 9 14 14 C 1.54909 * 111.00625 * 267.19832 * 12 11 9 15 15 N 1.47431 * 104.83077 * 204.91944 * 14 12 11 16 16 C 1.36941 * 125.64390 * 204.09329 * 15 14 12 17 17 H 1.07995 * 120.00421 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99525 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00394 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99571 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47013 * 60.00381 * 20 18 16 22 22 H 1.48498 * 109.46948 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47398 * 300.00355 * 20 18 16 24 24 C 1.47016 * 108.70548 * 24.12483 * 15 14 12 25 25 C 1.54322 * 107.27212 * 358.94359 * 24 15 14 26 26 H 1.08994 * 110.72020 * 219.26352 * 25 24 15 27 27 O 1.42905 * 110.71976 * 96.16556 * 25 24 15 28 28 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46780 * 300.00369 * 1 2 3 30 30 H 1.09000 * 109.46682 * 59.99792 * 1 2 3 31 31 H 1.07995 * 122.45523 * 359.96315 * 4 3 2 32 32 H 1.09003 * 109.47003 * 90.00495 * 6 5 4 33 33 H 1.09002 * 109.46835 * 210.00004 * 6 5 4 34 34 H 1.08993 * 109.47558 * 329.99611 * 6 5 4 35 35 H 0.96996 * 119.99815 * 0.02562 * 11 9 8 36 36 H 1.08997 * 110.36577 * 86.08267 * 14 12 11 37 37 H 1.08996 * 110.46105 * 323.79894 * 14 12 11 38 38 H 0.96993 * 120.00140 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.88597 * 239.52646 * 24 15 14 40 40 H 1.09004 * 109.88048 * 118.35934 * 24 15 14 41 41 H 0.96699 * 113.99962 * 61.45814 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4108 0.0005 5 6 2.1390 3.5001 0.0010 6 6 1.6190 4.9145 0.0021 7 16 3.7924 3.0804 0.0084 8 6 3.4095 1.3644 -0.0005 9 6 4.3567 0.3104 -0.0016 10 8 3.9793 -0.8474 -0.0027 11 7 5.6754 0.5893 -0.0026 12 6 6.6545 -0.5003 -0.0031 13 1 6.2659 -1.3725 -0.5287 14 6 7.0793 -0.8660 1.4410 15 7 8.4182 -1.4668 1.2999 16 6 8.9976 -2.3407 2.1808 17 1 8.4645 -2.6446 3.0695 18 6 10.2702 -2.8359 1.9313 19 7 10.9201 -2.4652 0.8485 20 14 11.0608 -4.0274 3.1332 21 1 10.2186 -5.2449 3.2496 22 1 12.4100 -4.4048 2.6408 23 1 11.1822 -3.3803 4.4642 24 6 9.0285 -0.9719 0.0574 25 6 8.0023 -0.0366 -0.6163 26 1 8.0054 -0.1755 -1.6973 27 8 8.2665 1.3277 -0.2828 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2867 2.4660 0.0004 32 1 1.4941 5.2548 1.0301 33 1 2.3288 5.5629 -0.5115 34 1 0.6582 4.9488 -0.5113 35 1 5.9759 1.5115 -0.0021 36 1 6.3833 -1.5868 1.8701 37 1 7.1285 0.0286 2.0617 38 1 11.8094 -2.8110 0.6744 39 1 9.2564 -1.8088 -0.6027 40 1 9.9395 -0.4189 0.2865 41 1 9.1319 1.6438 -0.5765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083830703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:53 Heat of formation + Delta-G solvation = -53.279677 kcal Electronic energy + Delta-G solvation = -25535.429996 eV Core-core repulsion = 21736.781658 eV Total energy + Delta-G solvation = -3798.648338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33984 -39.19644 -37.68977 -36.52757 -34.76263 -33.79356 -32.20344 -31.47817 -28.75517 -28.13021 -27.43724 -26.31689 -24.35382 -23.38582 -21.67035 -20.43228 -19.93101 -19.37708 -18.44909 -17.23675 -17.06129 -16.46646 -16.10846 -16.05439 -15.06621 -14.76542 -14.55799 -14.54825 -14.12853 -14.11313 -13.93223 -13.68033 -13.07307 -12.98064 -12.66015 -12.60492 -12.43524 -12.36628 -12.07323 -11.67406 -11.21752 -11.10305 -11.06727 -10.90506 -10.78820 -10.44764 -10.35873 -10.09772 -9.76172 -9.61353 -9.26364 -8.92137 -8.62556 -8.50496 -8.16198 -6.81935 -5.70009 -3.02582 0.35992 1.26130 1.60872 2.18985 3.32599 3.44118 3.47513 3.48584 3.53434 3.58015 4.27030 4.53735 4.65324 4.79663 4.84860 4.88750 4.94778 5.08026 5.16158 5.29638 5.38485 5.39842 5.47322 5.55416 5.59731 5.63631 5.79172 5.94818 5.96285 6.19330 6.30969 6.71507 6.75764 7.03785 7.12678 7.39111 7.49050 7.77171 7.94092 8.14684 8.25011 8.61670 9.23022 9.83129 10.48230 11.42308 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.002988 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.548106 B = 9369.447050 C =10159.742802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.270 6.270 3 C 0.188 3.812 4 C -0.220 4.220 5 C -0.169 4.169 6 C -0.088 4.088 7 S 0.232 5.768 8 C -0.319 4.319 9 C 0.589 3.411 10 O -0.526 6.526 11 N -0.710 5.710 12 C 0.142 3.858 13 H 0.106 0.894 14 C 0.131 3.869 15 N -0.601 5.601 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.927 5.927 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.155 3.845 25 C 0.067 3.933 26 H 0.061 0.939 27 O -0.569 6.569 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 16.343 -5.368 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.181 6.181 3 C 0.128 3.872 4 C -0.253 4.253 5 C -0.290 4.290 6 C -0.146 4.146 7 S 0.498 5.502 8 C -0.439 4.439 9 C 0.376 3.624 10 O -0.404 6.404 11 N -0.362 5.362 12 C 0.036 3.964 13 H 0.124 0.876 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.576 5.576 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.029 3.971 25 C 0.007 3.993 26 H 0.079 0.921 27 O -0.375 6.375 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -18.611 15.939 -5.082 25.025 hybrid contribution -0.455 -0.846 0.374 1.031 sum -19.065 15.092 -4.708 24.768 Atomic orbital electron populations 1.23164 0.78601 1.04355 1.01082 1.86364 1.20643 1.24076 1.87019 1.18210 0.90233 0.85332 0.93468 1.19928 1.01754 0.90670 1.12928 1.23971 0.99504 1.00460 1.05032 1.20448 1.01765 0.89016 1.03373 1.83131 1.02257 0.95818 1.69041 1.22778 0.95396 0.98040 1.27703 1.15583 0.81791 0.87705 0.77283 1.90874 1.79513 1.19987 1.50075 1.45647 1.04853 1.10425 1.75261 1.22310 0.85685 0.89579 0.98818 0.87606 1.21844 0.88109 0.96398 0.93301 1.44277 1.12856 1.52000 1.23619 1.19060 0.97866 1.17285 1.00920 0.90323 1.24784 0.97065 1.00638 0.98077 1.69900 1.13457 1.47752 1.26458 0.86147 0.78374 0.80822 0.80136 1.21119 1.21622 1.21187 1.21870 0.92437 0.94911 0.87874 1.23527 0.95967 0.82561 0.97231 0.92113 1.86234 1.40440 1.27115 1.83721 0.87894 0.92687 0.92732 0.83489 0.90025 0.90660 0.90251 0.76360 0.93738 0.95650 0.93717 0.92634 0.92930 0.77277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.94 101.05 1.00 1.21 16 2 O -0.27 -3.92 9.36 -36.58 -0.34 -4.27 16 3 C 0.19 2.59 6.70 -40.01 -0.27 2.32 16 4 C -0.22 -2.19 9.02 -41.28 -0.37 -2.57 16 5 C -0.17 -1.52 6.26 -35.93 -0.23 -1.74 16 6 C -0.09 -0.47 10.31 36.00 0.37 -0.10 16 7 S 0.23 2.48 21.94 -107.50 -2.36 0.12 16 8 C -0.32 -4.82 6.28 -38.61 -0.24 -5.06 16 9 C 0.59 10.91 7.59 -14.93 -0.11 10.80 16 10 O -0.53 -11.66 15.48 -12.40 -0.19 -11.85 16 11 N -0.71 -12.54 5.15 -54.58 -0.28 -12.82 16 12 C 0.14 2.86 3.31 -65.78 -0.22 2.64 16 13 H 0.11 2.27 7.54 -51.93 -0.39 1.88 16 14 C 0.13 3.04 6.92 -2.53 -0.02 3.03 16 15 N -0.60 -15.98 3.39 -170.07 -0.58 -16.56 16 16 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.93 -27.25 10.31 55.49 0.57 -26.68 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.15 3.73 5.13 -3.07 -0.02 3.71 16 25 C 0.07 1.27 4.20 -24.89 -0.10 1.17 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 O -0.57 -9.50 12.15 -35.23 -0.43 -9.93 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 30 H 0.05 0.37 7.88 -51.93 -0.41 -0.04 16 31 H 0.15 1.06 6.99 -52.49 -0.37 0.69 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 6.36 6.56 -40.82 -0.27 6.09 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.06 1.47 7.38 -51.93 -0.38 1.08 16 40 H 0.05 1.36 7.42 -51.93 -0.39 0.98 16 41 H 0.38 4.95 9.09 45.56 0.41 5.37 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -35.85 353.97 -8.45 -44.30 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.70 Total: 6.36 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.45 Total: 8.42 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.29 Total: -56.06 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.96 Total: -26.04 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.36 Total: 0.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.85 -8.45 -44.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083830703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.979 kcal (2) G-P(sol) polarization free energy of solvation -35.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds