Wall clock time and date at job start Fri Apr 10 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35783 * 117.00101 * 2 1 4 4 C 1.38026 * 123.47233 * 0.02562 * 3 2 1 5 5 C 1.33614 * 115.08545 * 179.97438 * 4 3 2 6 6 C 1.50693 * 124.42435 * 180.02562 * 5 4 3 7 7 S 1.70578 * 111.14359 * 359.72664 * 5 4 3 8 8 C 1.37271 * 123.46837 * 180.02562 * 3 2 1 9 9 C 1.41717 * 125.47684 * 0.02562 * 8 3 2 10 10 O 1.21774 * 120.00212 * 0.02562 * 9 8 3 11 11 N 1.34784 * 119.99921 * 179.97438 * 9 8 3 12 12 C 1.46493 * 119.99855 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.92002 * 31.10160 * 12 11 9 14 14 C 1.54909 * 111.00625 * 267.19832 * 12 11 9 15 15 N 1.47431 * 104.83077 * 204.91944 * 14 12 11 16 16 C 1.36941 * 125.64390 * 204.09329 * 15 14 12 17 17 H 1.07995 * 120.00421 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99525 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00394 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99571 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47013 * 60.00381 * 20 18 16 22 22 H 1.48498 * 109.46948 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47398 * 300.00355 * 20 18 16 24 24 C 1.47016 * 108.70548 * 24.12483 * 15 14 12 25 25 C 1.54322 * 107.27212 * 358.94359 * 24 15 14 26 26 H 1.08994 * 110.72020 * 219.26352 * 25 24 15 27 27 O 1.42905 * 110.71976 * 96.16556 * 25 24 15 28 28 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46780 * 300.00369 * 1 2 3 30 30 H 1.09000 * 109.46682 * 59.99792 * 1 2 3 31 31 H 1.07995 * 122.45523 * 359.96315 * 4 3 2 32 32 H 1.09003 * 109.47003 * 90.00495 * 6 5 4 33 33 H 1.09002 * 109.46835 * 210.00004 * 6 5 4 34 34 H 1.08993 * 109.47558 * 329.99611 * 6 5 4 35 35 H 0.96996 * 119.99815 * 0.02562 * 11 9 8 36 36 H 1.08997 * 110.36577 * 86.08267 * 14 12 11 37 37 H 1.08996 * 110.46105 * 323.79894 * 14 12 11 38 38 H 0.96993 * 120.00140 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.88597 * 239.52646 * 24 15 14 40 40 H 1.09004 * 109.88048 * 118.35934 * 24 15 14 41 41 H 0.96699 * 113.99962 * 61.45814 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4108 0.0005 5 6 2.1390 3.5001 0.0010 6 6 1.6190 4.9145 0.0021 7 16 3.7924 3.0804 0.0084 8 6 3.4095 1.3644 -0.0005 9 6 4.3567 0.3104 -0.0016 10 8 3.9793 -0.8474 -0.0027 11 7 5.6754 0.5893 -0.0026 12 6 6.6545 -0.5003 -0.0031 13 1 6.2659 -1.3725 -0.5287 14 6 7.0793 -0.8660 1.4410 15 7 8.4182 -1.4668 1.2999 16 6 8.9976 -2.3407 2.1808 17 1 8.4645 -2.6446 3.0695 18 6 10.2702 -2.8359 1.9313 19 7 10.9201 -2.4652 0.8485 20 14 11.0608 -4.0274 3.1332 21 1 10.2186 -5.2449 3.2496 22 1 12.4100 -4.4048 2.6408 23 1 11.1822 -3.3803 4.4642 24 6 9.0285 -0.9719 0.0574 25 6 8.0023 -0.0366 -0.6163 26 1 8.0054 -0.1755 -1.6973 27 8 8.2665 1.3277 -0.2828 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2867 2.4660 0.0004 32 1 1.4941 5.2548 1.0301 33 1 2.3288 5.5629 -0.5115 34 1 0.6582 4.9488 -0.5113 35 1 5.9759 1.5115 -0.0021 36 1 6.3833 -1.5868 1.8701 37 1 7.1285 0.0286 2.0617 38 1 11.8094 -2.8110 0.6744 39 1 9.2564 -1.8088 -0.6027 40 1 9.9395 -0.4189 0.2865 41 1 9.1319 1.6438 -0.5765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083830703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:53 Heat of formation + Delta-G solvation = -80.924641 kcal Electronic energy + Delta-G solvation = -25536.628771 eV Core-core repulsion = 21736.781658 eV Total energy + Delta-G solvation = -3799.847113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45165 -40.55446 -39.26933 -37.36061 -36.46719 -35.41774 -33.71008 -32.78841 -30.42906 -29.26006 -28.68081 -27.62633 -26.23920 -24.17531 -22.97976 -22.23276 -21.60373 -20.43940 -19.58775 -19.01804 -18.37160 -17.81247 -17.23223 -16.96260 -16.87412 -16.41170 -15.92369 -15.74692 -15.62511 -15.00520 -14.82769 -14.72138 -14.70746 -14.44734 -14.28100 -13.98292 -13.51971 -13.19816 -13.12992 -13.09394 -12.80931 -12.73771 -12.41338 -12.30054 -12.15459 -11.96034 -11.88175 -11.84117 -11.79443 -11.08329 -10.88918 -10.77227 -10.17203 -9.68939 -9.06203 -8.96071 -7.89118 -5.25382 -0.54868 0.40562 0.78338 1.29264 1.44669 1.48557 1.54675 2.11614 2.24149 2.49265 2.50090 3.18050 3.29402 3.56520 3.63340 3.80391 3.93494 4.04491 4.17579 4.21982 4.26737 4.36909 4.37357 4.47687 4.63208 4.64607 4.71604 4.76163 4.80201 4.92172 5.00877 5.11382 5.24545 5.33939 5.42830 5.47593 5.62861 6.13172 6.27057 6.56594 6.86712 7.05613 7.23995 7.68994 8.33627 9.20766 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.002988 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.548106 B = 9369.447050 C =10159.742802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.310 6.310 3 C 0.192 3.808 4 C -0.231 4.231 5 C -0.141 4.141 6 C -0.091 4.091 7 S 0.255 5.745 8 C -0.380 4.380 9 C 0.588 3.412 10 O -0.577 6.577 11 N -0.701 5.701 12 C 0.152 3.848 13 H 0.090 0.910 14 C 0.133 3.867 15 N -0.620 5.620 16 C -0.251 4.251 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.947 5.947 20 Si 0.982 3.018 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.161 3.839 25 C 0.093 3.907 26 H 0.091 0.909 27 O -0.564 6.564 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.411 0.589 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.251 0.749 39 H 0.026 0.974 40 H 0.031 0.969 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 19.060 -5.528 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.222 6.222 3 C 0.130 3.870 4 C -0.263 4.263 5 C -0.262 4.262 6 C -0.149 4.149 7 S 0.520 5.480 8 C -0.499 4.499 9 C 0.379 3.621 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.046 3.954 13 H 0.108 0.892 14 C 0.006 3.994 15 N -0.348 5.348 16 C -0.379 4.379 17 H 0.093 0.907 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.810 3.190 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.036 3.964 25 C 0.032 3.968 26 H 0.108 0.892 27 O -0.373 6.373 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.249 0.751 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -20.304 18.709 -5.249 28.104 hybrid contribution -0.057 -1.588 0.443 1.649 sum -20.361 17.121 -4.806 27.033 Atomic orbital electron populations 1.23488 0.75885 1.05617 1.03036 1.86307 1.23713 1.25428 1.86729 1.18673 0.90212 0.86338 0.91787 1.20117 1.03293 0.89201 1.13652 1.24546 0.98294 1.02165 1.01181 1.20685 1.02979 0.86366 1.04879 1.82934 1.03680 0.92375 1.68991 1.22654 0.95450 0.99698 1.32145 1.16064 0.82130 0.88040 0.75895 1.90828 1.80217 1.22298 1.52646 1.45463 1.04404 1.10127 1.75289 1.21921 0.86946 0.90180 0.96402 0.89235 1.21849 0.86578 0.95500 0.95427 1.44548 1.14104 1.52018 1.24081 1.19386 0.98573 1.18355 1.01629 0.90655 1.25628 0.97422 1.02289 0.99922 1.70097 1.13393 1.48391 1.27690 0.85109 0.77195 0.78589 0.78144 1.20600 1.21328 1.20294 1.21731 0.93237 0.94610 0.86826 1.23147 0.93112 0.82538 0.97982 0.89180 1.86198 1.42010 1.25179 1.83953 0.87202 0.90778 0.90563 0.80366 0.88381 0.89353 0.88104 0.75129 0.95647 0.95723 0.94017 0.95588 0.95076 0.74993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.94 113.37 1.13 1.35 16 2 O -0.31 -9.07 9.36 -74.36 -0.70 -9.77 16 3 C 0.19 5.15 6.70 21.99 0.15 5.30 16 4 C -0.23 -3.96 9.02 21.17 0.19 -3.77 16 5 C -0.14 -2.04 6.26 24.63 0.15 -1.89 16 6 C -0.09 -0.54 10.31 71.23 0.73 0.20 16 7 S 0.25 4.98 21.94 -56.49 -1.24 3.74 16 8 C -0.38 -11.49 6.28 22.90 0.14 -11.34 16 9 C 0.59 22.56 7.59 85.10 0.65 23.20 16 10 O -0.58 -27.09 15.48 12.17 0.19 -26.90 16 11 N -0.70 -25.15 5.15 -444.78 -2.29 -27.44 16 12 C 0.15 6.32 3.31 46.39 0.15 6.47 16 13 H 0.09 4.03 7.54 -2.39 -0.02 4.02 16 14 C 0.13 6.46 6.92 86.85 0.60 7.07 16 15 N -0.62 -34.25 3.39 -691.99 -2.35 -36.60 16 16 C -0.25 -14.93 10.28 84.03 0.86 -14.07 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 19 N -0.95 -56.91 10.31 21.65 0.22 -56.68 16 20 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 24 C 0.16 8.01 5.13 86.73 0.45 8.45 16 25 C 0.09 3.50 4.20 31.78 0.13 3.63 16 26 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 27 O -0.56 -18.05 12.15 -148.98 -1.81 -19.86 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 0.87 7.88 -2.39 -0.02 0.85 16 30 H 0.08 0.85 7.88 -2.39 -0.02 0.83 16 31 H 0.18 1.82 6.99 -2.91 -0.02 1.80 16 32 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.41 12.86 6.56 -92.71 -0.61 12.25 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.03 1.43 7.38 -2.39 -0.02 1.41 16 40 H 0.03 1.66 7.42 -2.38 -0.02 1.64 16 41 H 0.40 9.63 9.09 -74.06 -0.67 8.95 16 Total: -1.00 -82.11 353.97 -0.34 -82.45 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.20 Total: 20.36 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 5.81 Total: 21.60 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -4.42 Total: -120.72 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -2.32 Total: -56.53 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.24 Total: 3.74 kcal Total: -82.11 -0.34 -82.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083830703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.525 kcal (2) G-P(sol) polarization free energy of solvation -82.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds