Wall clock time and date at job start Fri Apr 10 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47148 * 299.99838 * 3 2 1 6 6 H 1.48502 * 109.47066 * 59.99858 * 3 2 1 7 7 C 1.38798 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99752 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46657 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00465 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99464 * 179.97438 * 11 10 9 14 14 C 1.47077 * 120.87727 * 179.97438 * 13 11 10 15 15 C 1.53249 * 108.52327 * 231.20682 * 14 13 11 16 16 N 1.46894 * 109.33841 * 306.17303 * 15 14 13 17 17 C 1.39155 * 111.00218 * 187.24841 * 16 15 14 18 18 C 1.39205 * 120.06733 * 179.97438 * 17 16 15 19 19 N 1.32003 * 119.93255 * 180.02562 * 18 17 16 20 20 C 1.32399 * 120.06013 * 0.02562 * 19 18 17 21 21 F 1.35099 * 119.93976 * 180.02562 * 20 19 18 22 22 C 1.38474 * 120.11887 * 359.97438 * 20 19 18 23 23 N 1.32211 * 120.06701 * 359.97438 * 22 20 19 24 24 C 1.46902 * 111.26833 * 63.10271 * 16 15 14 25 25 C 1.47080 * 120.88191 * 0.02562 * 13 11 10 26 26 H 0.97002 * 119.99944 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47104 * 59.99894 * 10 9 7 28 28 H 1.08996 * 109.46532 * 299.99996 * 10 9 7 29 29 H 1.09003 * 109.62730 * 111.50400 * 14 13 11 30 30 H 1.08994 * 109.63264 * 350.91865 * 14 13 11 31 31 H 1.08996 * 109.49361 * 186.21492 * 15 14 13 32 32 H 1.08993 * 109.48624 * 66.13280 * 15 14 13 33 33 H 1.08006 * 120.03202 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.96322 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.49416 * 56.85742 * 24 16 15 36 36 H 1.09005 * 109.49635 * 176.93357 * 24 16 15 37 37 H 1.09004 * 109.62530 * 248.49735 * 25 13 11 38 38 H 1.09001 * 109.63244 * 9.08164 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8915 -0.0013 11 6 1.9874 -5.3027 -0.0018 12 8 0.7911 -5.5023 -0.0019 13 7 2.8442 -6.3431 -0.0020 14 6 2.3496 -7.7282 -0.0018 15 6 3.0436 -8.4928 1.1306 16 7 4.4992 -8.3530 0.9913 17 6 5.1677 -9.1646 1.9027 18 6 6.5594 -9.1792 1.9338 19 7 7.1908 -9.9506 2.7991 20 6 6.5018 -10.7101 3.6365 21 9 7.1505 -11.4983 4.5215 22 6 5.1174 -10.6974 3.6076 23 7 4.4800 -9.9260 2.7435 24 6 4.9156 -6.9511 1.1306 25 6 4.2985 -6.1234 -0.0012 26 1 -0.4850 0.8401 -0.0004 27 1 3.1238 -3.7317 0.8892 28 1 3.1251 -3.7309 -0.8908 29 1 2.5807 -8.1996 -0.9571 30 1 1.2719 -7.7322 0.1605 31 1 2.7727 -9.5472 1.0769 32 1 2.7292 -8.0845 2.0910 33 1 7.1219 -8.5600 1.2506 34 1 4.5579 -11.3177 4.2921 35 1 4.5753 -6.5643 2.0911 36 1 6.0025 -6.8874 1.0769 37 1 4.7171 -6.4403 -0.9565 38 1 4.5091 -5.0663 0.1615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093144416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:58 Heat of formation + Delta-G solvation = -22.724473 kcal Electronic energy + Delta-G solvation = -24370.404820 eV Core-core repulsion = 20481.913902 eV Total energy + Delta-G solvation = -3888.490919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.14315 -42.50235 -41.09102 -39.14239 -36.20551 -35.19730 -34.57157 -32.90724 -31.55678 -30.56526 -28.05286 -27.59526 -26.51276 -24.58567 -24.36816 -22.60592 -20.51509 -19.67309 -19.35457 -19.17714 -18.72680 -17.67536 -17.45671 -16.99245 -16.86196 -16.75946 -16.29289 -16.01067 -15.84216 -15.62338 -15.29781 -14.94341 -14.77777 -14.60686 -14.46746 -14.31712 -13.50406 -13.44173 -13.15017 -12.95192 -12.91092 -12.68591 -12.57316 -12.52949 -12.41080 -12.34393 -11.68613 -11.24531 -11.14946 -10.90876 -10.43987 -10.24077 -9.80171 -9.34445 -8.66159 -8.33676 -6.11679 -0.52007 -0.18973 1.25749 1.42642 1.46492 1.55366 1.57658 1.92611 2.15177 2.28171 2.29350 2.41367 2.99817 3.00987 3.16516 3.24795 3.58415 3.65315 3.75578 3.90248 3.93248 4.10056 4.17162 4.24732 4.30796 4.38911 4.43605 4.48444 4.63598 4.71820 4.80053 4.95903 5.02835 5.26979 5.43700 5.48342 5.63551 6.02125 6.21038 6.24403 6.43890 7.08054 7.11097 8.75706 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.002343 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.726235 B =11947.754094 C =12620.733002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.613 5.613 14 C 0.116 3.884 15 C 0.063 3.937 16 N -0.460 5.460 17 C 0.253 3.747 18 C 0.088 3.912 19 N -0.468 5.468 20 C 0.209 3.791 21 F -0.109 7.109 22 C 0.079 3.921 23 N -0.470 5.470 24 C 0.042 3.958 25 C 0.106 3.894 26 H 0.270 0.730 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.213 0.787 34 H 0.209 0.791 35 H 0.047 0.953 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.037 -20.926 3.760 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.689 4.689 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.275 4.275 11 C 0.323 3.677 12 O -0.443 6.443 13 N -0.348 5.348 14 C -0.007 4.007 15 C -0.064 4.064 16 N -0.178 5.178 17 C 0.018 3.982 18 C -0.077 4.077 19 N -0.187 5.187 20 C 0.054 3.946 21 F -0.088 7.088 22 C -0.083 4.083 23 N -0.189 5.189 24 C -0.084 4.084 25 C -0.016 4.016 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.061 0.939 33 H 0.229 0.771 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.234 -21.289 3.306 26.386 hybrid contribution 1.186 1.103 0.936 1.870 sum 16.420 -20.186 4.242 26.365 Atomic orbital electron populations 1.70195 1.08024 1.28490 1.48201 1.26136 0.95945 1.03371 0.93847 0.84907 0.78772 0.76357 0.77928 1.17715 1.20094 1.20187 1.23220 0.95379 0.91752 1.58530 0.89629 1.85669 1.10796 0.99469 1.97030 1.23373 1.03399 0.94012 1.06673 1.20163 0.85940 0.86653 0.74961 1.90688 1.17333 1.85737 1.50547 1.48199 1.07541 1.05433 1.73647 1.21781 0.99508 0.79810 0.99553 1.22320 0.84401 1.02312 0.97409 1.59149 1.07697 1.08331 1.42576 1.21090 0.92433 0.95101 0.89554 1.23537 0.90489 0.97190 0.96503 1.67736 1.41437 1.05364 1.04201 1.19171 0.89439 0.94210 0.91827 1.91640 1.82441 1.70335 1.64407 1.23793 0.90158 0.97102 0.97225 1.68488 1.39428 1.07492 1.03505 1.22905 1.03571 0.83329 0.98575 1.22170 0.77481 1.01700 1.00260 0.92078 0.87205 0.86897 0.88894 0.89970 0.87536 0.93922 0.77088 0.77467 0.93436 0.84568 0.87518 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.37 13.22 21.65 0.29 -55.09 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 42.57 29.55 68.60 2.03 44.60 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -29.93 9.50 67.95 0.65 -29.29 16 8 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.16 -8.49 20.57 -56.49 -1.16 -9.66 16 10 C -0.12 -4.60 4.52 71.24 0.32 -4.27 16 11 C 0.53 18.91 7.73 87.66 0.68 19.59 16 12 O -0.56 -25.52 15.31 -3.02 -0.05 -25.57 16 13 N -0.61 -14.70 3.01 -818.00 -2.46 -17.16 16 14 C 0.12 2.43 6.60 86.35 0.57 3.00 16 15 C 0.06 1.11 4.83 86.39 0.42 1.53 16 16 N -0.46 -6.42 4.66 -700.55 -3.26 -9.69 16 17 C 0.25 3.72 6.40 132.95 0.85 4.57 16 18 C 0.09 1.10 10.32 84.90 0.88 1.98 16 19 N -0.47 -7.94 10.50 -195.81 -2.06 -10.00 16 20 C 0.21 3.36 8.43 84.66 0.71 4.07 16 21 F -0.11 -1.83 17.29 44.97 0.78 -1.05 16 22 C 0.08 1.06 11.20 84.69 0.95 2.01 16 23 N -0.47 -7.70 8.85 -192.40 -1.70 -9.40 16 24 C 0.04 0.48 5.42 86.37 0.47 0.95 16 25 C 0.11 1.53 6.50 86.34 0.56 2.10 16 26 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.11 3.61 7.66 -2.39 -0.02 3.60 16 28 H 0.11 3.70 8.00 -2.40 -0.02 3.68 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.13 7.06 -2.39 -0.02 2.11 16 31 H 0.11 1.75 7.66 -2.39 -0.02 1.73 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.21 1.16 7.15 -2.91 -0.02 1.13 16 34 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.14 0.60 6.65 -2.38 -0.02 0.58 16 37 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.11 1.49 6.02 -2.39 -0.01 1.48 16 Total: -1.00 -78.71 338.17 1.02 -77.69 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.10 Total: 7.97 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.52 Total: 7.35 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -9.20 Total: -101.33 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -78.71 1.02 -77.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093144416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.966 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds