Wall clock time and date at job start Fri Apr 10 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99683 * 2 1 4 4 H 1.48505 * 109.47006 * 269.99892 * 3 2 1 5 5 H 1.48491 * 109.47425 * 30.00271 * 3 2 1 6 6 H 1.48500 * 109.47098 * 150.00280 * 3 2 1 7 7 C 1.38793 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00276 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47418 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99784 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88300 * 180.02562 * 13 11 10 15 15 C 1.53234 * 108.52348 * 231.20629 * 14 13 11 16 16 N 1.46903 * 109.33863 * 306.17000 * 15 14 13 17 17 C 1.39123 * 110.99673 * 187.24830 * 16 15 14 18 18 N 1.32557 * 120.11071 * 359.97438 * 17 16 15 19 19 C 1.32313 * 119.94358 * 180.02562 * 18 17 16 20 20 C 1.38064 * 120.16452 * 359.97438 * 19 18 17 21 21 N 1.32354 * 120.21924 * 0.02562 * 20 19 18 22 22 C 1.32066 * 120.05744 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.08422 * 180.02562 * 22 21 20 24 24 C 1.46898 * 111.26559 * 63.10569 * 16 15 14 25 25 C 1.47081 * 120.87955 * 0.02562 * 13 11 10 26 26 H 0.96998 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46873 * 59.99747 * 10 9 7 28 28 H 1.09009 * 109.47017 * 300.00239 * 10 9 7 29 29 H 1.08997 * 109.62891 * 111.49500 * 14 13 11 30 30 H 1.09001 * 109.62692 * 350.91890 * 14 13 11 31 31 H 1.09000 * 109.49762 * 186.20694 * 15 14 13 32 32 H 1.09009 * 109.49165 * 66.12916 * 15 14 13 33 33 H 1.07991 * 119.91927 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.88791 * 180.28255 * 20 19 18 35 35 H 1.08994 * 109.49790 * 56.85501 * 24 16 15 36 36 H 1.09004 * 109.48896 * 176.93915 * 24 16 15 37 37 H 1.09007 * 109.62360 * 248.50576 * 25 13 11 38 38 H 1.09004 * 109.62658 * 9.07852 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 6 2.3498 -7.7282 -0.0030 15 6 3.0432 -8.4936 1.1290 16 7 4.4990 -8.3537 0.9904 17 6 5.1668 -9.1659 1.9014 18 7 4.4801 -9.9277 2.7411 19 6 5.1187 -10.6985 3.6065 20 6 6.4989 -10.7120 3.6368 21 7 7.1910 -9.9539 2.8012 22 6 6.5626 -9.1805 1.9346 23 9 7.2685 -8.4069 1.0812 24 6 4.9152 -6.9519 1.1311 25 6 4.2986 -6.1234 -0.0013 26 1 -0.4849 0.8400 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1246 -3.7313 -0.8906 29 1 2.5812 -8.1988 -0.9585 30 1 1.2719 -7.7323 0.1588 31 1 2.7723 -9.5480 1.0744 32 1 2.7284 -8.0861 2.0898 33 1 4.5589 -11.3193 4.2902 34 1 7.0155 -11.3463 4.3418 35 1 4.5744 -6.5659 2.0918 36 1 6.0021 -6.8882 1.0779 37 1 4.7170 -6.4399 -0.9568 38 1 4.5091 -5.0663 0.1616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093145538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:01 Heat of formation + Delta-G solvation = 5.218649 kcal Electronic energy + Delta-G solvation = -24799.231684 eV Core-core repulsion = 20911.952470 eV Total energy + Delta-G solvation = -3887.279214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.55569 -41.70279 -40.03275 -38.17175 -35.33296 -34.11402 -32.45244 -31.93232 -30.98123 -29.27801 -27.26160 -25.58313 -25.30280 -24.05533 -23.59958 -21.64327 -19.33036 -18.71497 -18.51912 -18.12571 -17.52026 -16.83005 -16.48461 -15.77362 -15.64659 -15.53298 -15.34977 -14.98323 -14.82472 -14.57688 -14.11923 -13.99841 -13.83790 -13.44126 -13.23617 -12.78523 -12.53105 -12.20540 -11.98836 -11.87015 -11.70392 -11.57893 -11.51696 -11.08165 -11.04383 -10.77840 -10.46234 -9.83532 -9.81360 -9.44038 -9.08945 -8.82490 -8.57160 -8.26245 -6.53375 -6.23957 -3.95035 0.11030 0.44683 2.53348 2.80578 2.91996 2.97158 3.16636 3.20950 3.24474 3.28737 3.53235 3.62686 3.71409 4.17693 4.35409 4.44680 4.55520 4.58613 4.77001 4.87792 4.94505 4.96186 5.09915 5.11365 5.24663 5.34086 5.46670 5.57435 5.58174 5.71275 5.78668 5.84235 6.04712 6.06951 6.33653 6.48665 6.62706 7.08359 7.44683 7.57279 8.32720 8.46864 9.21394 10.83450 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.002605 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.645844 B =10747.286988 C =11449.512698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.626 5.626 14 C 0.115 3.885 15 C 0.053 3.947 16 N -0.464 5.464 17 C 0.262 3.738 18 N -0.453 5.453 19 C 0.073 3.927 20 C 0.048 3.952 21 N -0.447 5.447 22 C 0.246 3.754 23 F -0.094 7.094 24 C 0.030 3.970 25 C 0.116 3.884 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.824 -22.423 5.949 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.325 3.675 12 O -0.387 6.387 13 N -0.363 5.363 14 C -0.008 4.008 15 C -0.074 4.074 16 N -0.182 5.182 17 C 0.024 3.976 18 N -0.173 5.173 19 C -0.087 4.087 20 C -0.111 4.111 21 N -0.167 5.167 22 C 0.084 3.916 23 F -0.073 7.073 24 C -0.097 4.097 25 C -0.008 4.008 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.198 0.802 34 H 0.198 0.802 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.954 -22.646 5.388 26.169 hybrid contribution 2.140 1.449 0.534 2.639 sum 14.094 -21.198 5.922 26.135 Atomic orbital electron populations 1.70018 1.05960 1.27490 1.46789 1.24995 0.95033 0.99049 0.94504 0.86164 0.79399 0.81538 0.78382 1.20234 1.20755 1.19684 1.22849 0.94882 0.91582 1.59045 0.90912 1.85424 1.04850 0.96359 1.96703 1.23566 1.06637 0.95300 1.04759 1.20358 0.86177 0.86134 0.74840 1.90698 1.15090 1.85149 1.47757 1.48222 1.06242 1.05918 1.75901 1.21693 1.00385 0.80762 0.97947 1.22534 0.83179 1.02492 0.99240 1.59061 1.08895 1.07953 1.42268 1.20686 0.89439 0.96554 0.90961 1.68523 1.38688 1.07059 1.02985 1.23712 0.93405 0.95771 0.95811 1.23444 0.92526 0.97675 0.97485 1.67728 1.40924 1.04651 1.03355 1.18523 0.86185 0.94619 0.92268 1.91606 1.78976 1.70561 1.66201 1.22959 1.02697 0.84062 0.99941 1.21798 0.80049 1.00675 0.98237 0.92157 0.89285 0.89070 0.90794 0.87732 0.88169 0.92104 0.80218 0.80231 0.92246 0.87601 0.90013 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.00 4.52 36.00 0.16 -2.84 16 11 C 0.54 9.94 7.73 -10.99 -0.08 9.85 16 12 O -0.51 -11.45 15.31 5.56 0.09 -11.37 16 13 N -0.63 -8.64 3.01 -172.45 -0.52 -9.16 16 14 C 0.12 1.37 6.60 -3.61 -0.02 1.34 16 15 C 0.05 0.55 4.83 -3.70 -0.02 0.53 16 16 N -0.46 -4.78 4.61 -172.64 -0.80 -5.58 16 17 C 0.26 2.66 6.41 -154.58 -0.99 1.67 16 18 N -0.45 -4.17 8.85 -12.17 -0.11 -4.27 16 19 C 0.07 0.44 11.21 -17.41 -0.20 0.24 16 20 C 0.05 0.29 11.21 -17.39 -0.19 0.10 16 21 N -0.45 -4.29 10.50 -13.24 -0.14 -4.42 16 22 C 0.25 2.55 8.10 -16.93 -0.14 2.41 16 23 F -0.09 -1.00 14.80 2.25 0.03 -0.97 16 24 C 0.03 0.29 5.33 -3.68 -0.02 0.27 16 25 C 0.12 1.24 6.51 -3.58 -0.02 1.22 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.09 1.61 7.66 -51.92 -0.40 1.22 16 28 H 0.09 1.66 8.00 -51.91 -0.42 1.24 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.37 7.06 -51.93 -0.37 1.01 16 31 H 0.10 0.95 7.66 -51.93 -0.40 0.55 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.18 0.41 8.06 -52.49 -0.42 -0.02 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.93 5.53 -51.93 -0.29 0.65 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.06 6.02 -51.93 -0.31 0.75 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -35.42 335.92 -8.47 -43.89 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.26 Total: -2.32 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.33 Total: 2.02 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.83 Total: -48.69 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.03 Total: -0.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.42 -8.47 -43.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093145538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.111 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds