Wall clock time and date at job start Fri Apr 10 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99683 * 2 1 4 4 H 1.48505 * 109.47006 * 269.99892 * 3 2 1 5 5 H 1.48491 * 109.47425 * 30.00271 * 3 2 1 6 6 H 1.48500 * 109.47098 * 150.00280 * 3 2 1 7 7 C 1.38793 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00276 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47418 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99784 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88300 * 180.02562 * 13 11 10 15 15 C 1.53234 * 108.52348 * 231.20629 * 14 13 11 16 16 N 1.46903 * 109.33863 * 306.17000 * 15 14 13 17 17 C 1.39123 * 110.99673 * 187.24830 * 16 15 14 18 18 N 1.32557 * 120.11071 * 359.97438 * 17 16 15 19 19 C 1.32313 * 119.94358 * 180.02562 * 18 17 16 20 20 C 1.38064 * 120.16452 * 359.97438 * 19 18 17 21 21 N 1.32354 * 120.21924 * 0.02562 * 20 19 18 22 22 C 1.32066 * 120.05744 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.08422 * 180.02562 * 22 21 20 24 24 C 1.46898 * 111.26559 * 63.10569 * 16 15 14 25 25 C 1.47081 * 120.87955 * 0.02562 * 13 11 10 26 26 H 0.96998 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46873 * 59.99747 * 10 9 7 28 28 H 1.09009 * 109.47017 * 300.00239 * 10 9 7 29 29 H 1.08997 * 109.62891 * 111.49500 * 14 13 11 30 30 H 1.09001 * 109.62692 * 350.91890 * 14 13 11 31 31 H 1.09000 * 109.49762 * 186.20694 * 15 14 13 32 32 H 1.09009 * 109.49165 * 66.12916 * 15 14 13 33 33 H 1.07991 * 119.91927 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.88791 * 180.28255 * 20 19 18 35 35 H 1.08994 * 109.49790 * 56.85501 * 24 16 15 36 36 H 1.09004 * 109.48896 * 176.93915 * 24 16 15 37 37 H 1.09007 * 109.62360 * 248.50576 * 25 13 11 38 38 H 1.09004 * 109.62658 * 9.07852 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 6 2.3498 -7.7282 -0.0030 15 6 3.0432 -8.4936 1.1290 16 7 4.4990 -8.3537 0.9904 17 6 5.1668 -9.1659 1.9014 18 7 4.4801 -9.9277 2.7411 19 6 5.1187 -10.6985 3.6065 20 6 6.4989 -10.7120 3.6368 21 7 7.1910 -9.9539 2.8012 22 6 6.5626 -9.1805 1.9346 23 9 7.2685 -8.4069 1.0812 24 6 4.9152 -6.9519 1.1311 25 6 4.2986 -6.1234 -0.0013 26 1 -0.4849 0.8400 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1246 -3.7313 -0.8906 29 1 2.5812 -8.1988 -0.9585 30 1 1.2719 -7.7323 0.1588 31 1 2.7723 -9.5480 1.0744 32 1 2.7284 -8.0861 2.0898 33 1 4.5589 -11.3193 4.2902 34 1 7.0155 -11.3463 4.3418 35 1 4.5744 -6.5659 2.0918 36 1 6.0021 -6.8882 1.0779 37 1 4.7170 -6.4399 -0.9568 38 1 4.5091 -5.0663 0.1616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093145538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:01 Heat of formation + Delta-G solvation = -20.503905 kcal Electronic energy + Delta-G solvation = -24800.347098 eV Core-core repulsion = 20911.952470 eV Total energy + Delta-G solvation = -3888.394628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.26867 -42.36235 -41.16282 -39.26300 -36.33275 -34.87916 -34.58506 -32.92613 -31.73584 -30.61897 -28.22623 -27.63380 -26.11952 -24.79538 -24.40326 -22.68480 -20.54035 -19.68376 -19.39024 -19.16625 -18.78127 -17.71072 -17.54864 -17.02988 -16.87493 -16.79269 -16.31359 -16.08942 -15.94427 -15.69313 -15.27863 -14.85250 -14.66735 -14.55410 -14.47234 -14.44145 -13.54823 -13.48104 -13.17323 -12.93070 -12.89415 -12.70228 -12.61727 -12.55111 -12.43826 -12.35743 -11.72319 -11.17495 -11.14349 -10.94818 -10.41997 -10.27336 -9.86266 -9.38934 -8.67820 -8.34826 -6.13165 -0.48514 -0.16339 1.23133 1.42645 1.44335 1.50960 1.55481 1.85853 2.04850 2.26885 2.28910 2.53777 2.99543 3.05615 3.10579 3.21153 3.52258 3.67030 3.83039 3.86075 4.00582 4.07544 4.13484 4.18957 4.25579 4.38906 4.42365 4.47418 4.55629 4.67960 4.71906 4.88576 5.05309 5.24246 5.41937 5.42955 5.62448 6.02871 6.17768 6.20342 6.49185 7.06024 7.06791 8.74397 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.002605 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.645844 B =10747.286988 C =11449.512698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.126 4.126 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.613 5.613 14 C 0.115 3.885 15 C 0.067 3.933 16 N -0.468 5.468 17 C 0.245 3.755 18 N -0.471 5.471 19 C 0.082 3.918 20 C 0.062 3.938 21 N -0.471 5.471 22 C 0.225 3.775 23 F -0.104 7.104 24 C 0.036 3.964 25 C 0.112 3.888 26 H 0.271 0.729 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.222 0.778 34 H 0.222 0.778 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.475 -23.727 6.906 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.277 4.277 11 C 0.325 3.675 12 O -0.439 6.439 13 N -0.348 5.348 14 C -0.007 4.007 15 C -0.060 4.060 16 N -0.186 5.186 17 C 0.009 3.991 18 N -0.191 5.191 19 C -0.078 4.078 20 C -0.098 4.098 21 N -0.190 5.190 22 C 0.065 3.935 23 F -0.083 7.083 24 C -0.090 4.090 25 C -0.011 4.011 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.238 0.762 34 H 0.239 0.761 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.665 -23.972 6.321 28.804 hybrid contribution 1.407 1.580 0.366 2.147 sum 16.072 -22.392 6.687 28.363 Atomic orbital electron populations 1.70185 1.07987 1.28603 1.48045 1.26128 0.95958 1.03326 0.93760 0.84955 0.78222 0.76018 0.78801 1.19311 1.20404 1.18107 1.23188 0.95360 0.91850 1.58802 0.89789 1.85607 1.10492 0.99274 1.97031 1.23387 1.03568 0.94162 1.06570 1.20129 0.85919 0.86546 0.74931 1.90682 1.17076 1.85697 1.50461 1.48191 1.07206 1.05673 1.73717 1.21815 0.99728 0.79685 0.99519 1.22336 0.83513 1.02569 0.97582 1.59068 1.08374 1.08013 1.43151 1.20604 0.89383 0.97280 0.91837 1.68548 1.39403 1.07527 1.03582 1.24455 0.93885 0.94616 0.94889 1.24226 0.92871 0.96280 0.96456 1.67787 1.41843 1.05373 1.04032 1.18580 0.86262 0.95587 0.93071 1.91567 1.79127 1.70954 1.66630 1.22886 1.03211 0.84011 0.98910 1.22066 0.77817 1.01465 0.99713 0.92008 0.87359 0.87060 0.89091 0.89332 0.87055 0.93572 0.76201 0.76142 0.93184 0.86419 0.88085 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.54 -30.78 9.50 67.95 0.65 -30.13 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -4.95 4.52 71.23 0.32 -4.62 16 11 C 0.54 20.03 7.73 87.66 0.68 20.71 16 12 O -0.56 -25.98 15.31 -3.02 -0.05 -26.03 16 13 N -0.61 -16.52 3.01 -817.89 -2.46 -18.98 16 14 C 0.12 2.67 6.60 86.35 0.57 3.24 16 15 C 0.07 1.34 4.83 86.38 0.42 1.76 16 16 N -0.47 -9.09 4.61 -700.10 -3.23 -12.32 16 17 C 0.24 4.65 6.41 133.09 0.85 5.50 16 18 N -0.47 -7.68 8.85 -192.42 -1.70 -9.39 16 19 C 0.08 0.71 11.21 84.58 0.95 1.66 16 20 C 0.06 0.54 11.21 84.57 0.95 1.48 16 21 N -0.47 -8.07 10.50 -195.80 -2.06 -10.12 16 22 C 0.22 4.39 8.10 84.99 0.69 5.07 16 23 F -0.10 -2.12 14.80 44.97 0.67 -1.46 16 24 C 0.04 0.66 5.33 86.39 0.46 1.12 16 25 C 0.11 2.20 6.51 86.36 0.56 2.76 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.11 3.82 7.66 -2.40 -0.02 3.80 16 28 H 0.11 3.91 8.00 -2.39 -0.02 3.89 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 2.39 7.06 -2.39 -0.02 2.37 16 31 H 0.11 1.98 7.66 -2.39 -0.02 1.96 16 32 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.22 -0.05 8.06 -2.92 -0.02 -0.08 16 34 H 0.22 -0.08 8.06 -2.91 -0.02 -0.11 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.12 1.93 5.53 -2.38 -0.01 1.92 16 37 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.11 2.02 6.02 -2.38 -0.01 2.01 16 Total: -1.00 -80.32 335.92 0.98 -79.34 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.10 Total: 9.00 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 7.56 Total: 9.76 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -9.16 Total: -106.42 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.67 Total: -1.46 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.32 0.98 -79.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093145538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.838 kcal (2) G-P(sol) polarization free energy of solvation -80.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds