Wall clock time and date at job start Fri Apr 10 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48500 * 109.47277 * 269.99949 * 3 2 1 5 5 H 1.48495 * 109.47332 * 29.99766 * 3 2 1 6 6 H 1.48504 * 109.47074 * 149.99880 * 3 2 1 7 7 C 1.38789 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99961 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99968 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46835 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99897 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99334 * 180.02562 * 11 10 9 14 14 C 1.47425 * 125.65549 * 359.97109 * 13 11 10 15 15 C 1.54902 * 104.83267 * 155.91024 * 14 13 11 16 16 C 1.55155 * 101.58351 * 37.01133 * 15 14 13 17 17 H 1.09000 * 110.71977 * 83.03834 * 16 15 14 18 18 N 1.46495 * 110.72223 * 206.13401 * 16 15 14 19 19 C 1.38579 * 120.00222 * 205.00207 * 18 16 15 20 20 C 1.39465 * 120.51182 * 359.97438 * 19 18 16 21 21 C 1.38467 * 118.30923 * 179.73018 * 20 19 18 22 22 F 1.35105 * 120.42651 * 180.02562 * 21 20 19 23 23 N 1.32783 * 119.13915 * 359.97438 * 21 20 19 24 24 C 1.31754 * 120.96603 * 0.02562 * 23 21 20 25 25 N 1.31764 * 121.85873 * 359.97438 * 24 23 21 26 26 C 1.47022 * 125.64315 * 180.02562 * 13 11 10 27 27 H 0.96998 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47164 * 60.00393 * 10 9 7 29 29 H 1.08999 * 109.47204 * 300.00096 * 10 9 7 30 30 H 1.08998 * 110.36355 * 37.07118 * 14 13 11 31 31 H 1.08999 * 110.36664 * 274.75355 * 14 13 11 32 32 H 1.09002 * 111.00511 * 278.93488 * 15 14 13 33 33 H 1.09006 * 111.00246 * 155.08611 * 15 14 13 34 34 H 0.97002 * 120.00256 * 25.00034 * 18 16 15 35 35 H 1.08000 * 120.84558 * 359.70363 * 20 19 18 36 36 H 1.08005 * 119.07159 * 180.02562 * 24 23 21 37 37 H 1.09001 * 109.88650 * 61.60250 * 26 13 11 38 38 H 1.09001 * 109.88414 * 300.43658 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0001 14 6 5.2253 -5.7194 0.0000 15 6 6.1400 -6.8094 -0.6121 16 6 7.5232 -6.4199 -0.0270 17 1 7.6434 -6.8219 0.9790 18 7 8.6044 -6.8825 -0.9006 19 6 9.8654 -7.1187 -0.3768 20 6 10.1173 -6.9190 0.9803 21 6 11.3923 -7.1744 1.4561 22 9 11.6833 -6.9959 2.7633 23 7 12.3249 -7.5981 0.6112 24 6 12.0525 -7.7762 -0.6655 25 7 10.8530 -7.5451 -1.1596 26 6 7.4651 -4.8780 0.0004 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6434 -3.4317 0.8906 30 1 4.3365 -5.5804 -0.6156 31 1 4.9442 -5.9878 1.0183 32 1 6.1451 -6.7492 -1.7004 33 1 5.8405 -7.8031 -0.2787 34 1 8.4376 -7.0235 -1.8457 35 1 9.3377 -6.5735 1.6432 36 1 12.8342 -8.1222 -1.3256 37 1 7.9498 -4.5048 0.9026 38 1 7.9588 -4.4727 -0.8828 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095010323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:13 Heat of formation + Delta-G solvation = -12.142128 kcal Electronic energy + Delta-G solvation = -23994.660335 eV Core-core repulsion = 20106.628302 eV Total energy + Delta-G solvation = -3888.032034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.54395 -41.39497 -40.13316 -38.08512 -35.95434 -33.37470 -32.48859 -31.96538 -30.54016 -29.98049 -28.07165 -25.67673 -25.05198 -24.29594 -23.23020 -21.66010 -19.68251 -19.18787 -18.69359 -17.79645 -17.12387 -16.83396 -16.66371 -16.09282 -16.06684 -15.62679 -15.30527 -15.02405 -14.83241 -14.75567 -14.28815 -14.08175 -13.88927 -13.72317 -13.24749 -12.88469 -12.77369 -12.60916 -12.26815 -12.04089 -11.53750 -11.50712 -11.30949 -11.16535 -11.04803 -10.68004 -10.30108 -9.94140 -9.91167 -9.67578 -9.05183 -8.90206 -8.75989 -8.56211 -6.98482 -6.33673 -4.06299 0.39435 0.71830 2.14511 2.62993 2.81466 2.95015 3.11305 3.25743 3.29635 3.46867 3.53049 3.70737 3.83249 4.01627 4.11317 4.28737 4.32277 4.58255 4.62162 4.67903 4.69563 4.81356 5.05377 5.07108 5.08045 5.21841 5.29501 5.30385 5.46614 5.52797 5.69091 5.77193 5.91196 6.04005 6.13079 6.52698 6.87251 7.37088 7.61612 7.89219 8.28997 8.36218 9.12390 10.75400 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.002222 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.356348 B =12599.429523 C =13030.588511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.142 6.142 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.625 5.625 14 C 0.101 3.899 15 C -0.136 4.136 16 C 0.135 3.865 17 H 0.107 0.893 18 N -0.692 5.692 19 C 0.465 3.535 20 C -0.318 4.318 21 C 0.386 3.614 22 F -0.100 7.100 23 N -0.593 5.593 24 C 0.377 3.623 25 N -0.583 5.583 26 C 0.094 3.906 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.208 0.792 37 H 0.073 0.927 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.187 -20.616 -0.641 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.387 6.387 13 N -0.363 5.363 14 C -0.023 4.023 15 C -0.175 4.175 16 C 0.029 3.971 17 H 0.125 0.875 18 N -0.323 5.323 19 C 0.221 3.779 20 C -0.348 4.348 21 C 0.229 3.771 22 F -0.079 7.079 23 N -0.318 5.318 24 C 0.088 3.912 25 N -0.308 5.308 26 C -0.030 4.030 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.225 0.775 37 H 0.092 0.908 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.645 -19.242 -1.011 27.517 hybrid contribution -1.436 -0.057 0.448 1.506 sum 18.209 -19.299 -0.563 26.539 Atomic orbital electron populations 1.69935 1.05891 1.27825 1.47907 1.24709 0.94462 0.98977 0.93137 0.86741 0.81900 0.83288 0.79966 1.19189 1.19881 1.15925 1.22284 0.88101 0.97550 1.58976 0.89342 1.84844 1.09477 0.99798 1.97428 1.23257 0.93324 1.04470 1.05752 1.20057 0.90677 0.80446 0.75219 1.90725 1.58872 1.41156 1.47942 1.48383 1.06322 1.05543 1.76063 1.22331 0.94965 0.83276 1.01725 1.23090 0.92666 0.99770 1.01973 1.22183 0.86150 0.93577 0.95225 0.87483 1.44485 1.05663 1.69862 1.12272 1.18263 0.86284 0.85652 0.87672 1.21853 0.98911 1.17000 0.97025 1.17999 0.88954 0.90582 0.79614 1.91678 1.94064 1.91480 1.30705 1.67861 1.36422 1.21908 1.05628 1.24564 0.91471 0.87617 0.87527 1.68021 1.01520 1.21909 1.39318 1.22322 0.83854 0.93614 1.03254 0.91888 0.88489 0.88379 0.89302 0.90505 0.89424 0.88585 0.74658 0.82709 0.77525 0.90843 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.97 55.49 0.78 -25.32 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.49 27.74 -169.99 -4.72 16.78 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 8 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.18 5.16 36.01 0.19 -1.99 16 11 C 0.55 9.43 7.87 -10.98 -0.09 9.34 16 12 O -0.51 -10.95 16.19 5.56 0.09 -10.86 16 13 N -0.62 -7.43 3.33 -170.52 -0.57 -8.00 16 14 C 0.10 0.77 6.69 -2.53 -0.02 0.75 16 15 C -0.14 -0.65 6.71 -24.59 -0.17 -0.82 16 16 C 0.13 0.79 3.05 -66.10 -0.20 0.59 16 17 H 0.11 0.51 6.41 -51.93 -0.33 0.17 16 18 N -0.69 -4.26 5.26 -52.03 -0.27 -4.53 16 19 C 0.47 3.73 7.71 -154.76 -1.19 2.54 16 20 C -0.32 -2.57 9.29 -39.04 -0.36 -2.93 16 21 C 0.39 3.70 8.50 -17.06 -0.14 3.56 16 22 F -0.10 -1.00 17.30 2.25 0.04 -0.96 16 23 N -0.59 -5.74 10.45 -14.98 -0.16 -5.90 16 24 C 0.38 2.89 12.28 -92.21 -1.13 1.75 16 25 N -0.58 -4.93 10.47 -13.84 -0.14 -5.07 16 26 C 0.09 0.92 6.62 -3.06 -0.02 0.90 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.10 1.65 7.85 -51.92 -0.41 1.25 16 29 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.09 0.68 7.48 -51.93 -0.39 0.29 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.40 8.01 -51.93 -0.42 -0.01 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.42 2.21 8.69 -40.82 -0.35 1.86 16 35 H 0.16 0.99 6.31 -52.49 -0.33 0.66 16 36 H 0.21 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.83 8.03 -51.93 -0.42 0.42 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -35.31 343.35 -9.03 -44.34 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.34 Total: -2.12 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.92 Total: 1.97 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.37 Total: -48.82 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.72 Total: 16.78 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.31 -9.03 -44.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095010323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.201 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds