Wall clock time and date at job start Fri Apr 10 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48500 * 109.47277 * 269.99949 * 3 2 1 5 5 H 1.48495 * 109.47332 * 29.99766 * 3 2 1 6 6 H 1.48504 * 109.47074 * 149.99880 * 3 2 1 7 7 C 1.38789 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99961 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99968 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46835 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99897 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99334 * 180.02562 * 11 10 9 14 14 C 1.47425 * 125.65549 * 359.97109 * 13 11 10 15 15 C 1.54902 * 104.83267 * 155.91024 * 14 13 11 16 16 C 1.55155 * 101.58351 * 37.01133 * 15 14 13 17 17 H 1.09000 * 110.71977 * 83.03834 * 16 15 14 18 18 N 1.46495 * 110.72223 * 206.13401 * 16 15 14 19 19 C 1.38579 * 120.00222 * 205.00207 * 18 16 15 20 20 C 1.39465 * 120.51182 * 359.97438 * 19 18 16 21 21 C 1.38467 * 118.30923 * 179.73018 * 20 19 18 22 22 F 1.35105 * 120.42651 * 180.02562 * 21 20 19 23 23 N 1.32783 * 119.13915 * 359.97438 * 21 20 19 24 24 C 1.31754 * 120.96603 * 0.02562 * 23 21 20 25 25 N 1.31764 * 121.85873 * 359.97438 * 24 23 21 26 26 C 1.47022 * 125.64315 * 180.02562 * 13 11 10 27 27 H 0.96998 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47164 * 60.00393 * 10 9 7 29 29 H 1.08999 * 109.47204 * 300.00096 * 10 9 7 30 30 H 1.08998 * 110.36355 * 37.07118 * 14 13 11 31 31 H 1.08999 * 110.36664 * 274.75355 * 14 13 11 32 32 H 1.09002 * 111.00511 * 278.93488 * 15 14 13 33 33 H 1.09006 * 111.00246 * 155.08611 * 15 14 13 34 34 H 0.97002 * 120.00256 * 25.00034 * 18 16 15 35 35 H 1.08000 * 120.84558 * 359.70363 * 20 19 18 36 36 H 1.08005 * 119.07159 * 180.02562 * 24 23 21 37 37 H 1.09001 * 109.88650 * 61.60250 * 26 13 11 38 38 H 1.09001 * 109.88414 * 300.43658 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0001 14 6 5.2253 -5.7194 0.0000 15 6 6.1400 -6.8094 -0.6121 16 6 7.5232 -6.4199 -0.0270 17 1 7.6434 -6.8219 0.9790 18 7 8.6044 -6.8825 -0.9006 19 6 9.8654 -7.1187 -0.3768 20 6 10.1173 -6.9190 0.9803 21 6 11.3923 -7.1744 1.4561 22 9 11.6833 -6.9959 2.7633 23 7 12.3249 -7.5981 0.6112 24 6 12.0525 -7.7762 -0.6655 25 7 10.8530 -7.5451 -1.1596 26 6 7.4651 -4.8780 0.0004 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6434 -3.4317 0.8906 30 1 4.3365 -5.5804 -0.6156 31 1 4.9442 -5.9878 1.0183 32 1 6.1451 -6.7492 -1.7004 33 1 5.8405 -7.8031 -0.2787 34 1 8.4376 -7.0235 -1.8457 35 1 9.3377 -6.5735 1.6432 36 1 12.8342 -8.1222 -1.3256 37 1 7.9498 -4.5048 0.9026 38 1 7.9588 -4.4727 -0.8828 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095010323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:12 Heat of formation + Delta-G solvation = -36.438592 kcal Electronic energy + Delta-G solvation = -23995.713909 eV Core-core repulsion = 20106.628302 eV Total energy + Delta-G solvation = -3889.085608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.24825 -42.00753 -41.11259 -39.07585 -36.72809 -34.67941 -34.06193 -32.74951 -31.44524 -30.86785 -28.99372 -27.84711 -25.69532 -25.05161 -23.93110 -22.24370 -20.83180 -19.91956 -19.59918 -19.27900 -18.17260 -17.79330 -17.35900 -17.14706 -16.82179 -16.74004 -16.59390 -16.22277 -15.75800 -15.63132 -15.41034 -15.04167 -14.91735 -14.73711 -14.52962 -14.13405 -13.75296 -13.48022 -13.35861 -13.10127 -13.02501 -12.84864 -12.68762 -12.14146 -12.03772 -11.88281 -11.71865 -11.18106 -11.09863 -10.91446 -10.57801 -10.54267 -9.81169 -9.43924 -9.02013 -8.52347 -6.23501 -0.22082 0.09346 0.93968 1.30216 1.40437 1.47653 1.49661 1.68088 2.09316 2.23881 2.33420 2.64707 2.67222 2.85991 3.18251 3.27335 3.39911 3.56099 3.74748 3.82163 4.02571 4.12034 4.12854 4.16948 4.27799 4.40536 4.55644 4.60565 4.64068 4.73414 4.94113 5.02248 5.21115 5.24729 5.48607 5.70226 5.94359 6.10932 6.26645 6.37016 6.93100 7.01103 7.02935 8.59729 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.002222 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.356348 B =12599.429523 C =13030.588511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.525 4.525 8 H 0.066 0.934 9 S -0.182 6.182 10 C -0.100 4.100 11 C 0.547 3.453 12 O -0.566 6.566 13 N -0.614 5.614 14 C 0.087 3.913 15 C -0.121 4.121 16 C 0.147 3.853 17 H 0.128 0.872 18 N -0.681 5.681 19 C 0.460 3.540 20 C -0.316 4.316 21 C 0.368 3.632 22 F -0.109 7.109 23 N -0.615 5.615 24 C 0.376 3.624 25 N -0.593 5.593 26 C 0.090 3.910 27 H 0.277 0.723 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.421 0.579 35 H 0.171 0.829 36 H 0.240 0.760 37 H 0.066 0.934 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.857 -22.536 -0.943 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.673 4.673 8 H 0.084 0.916 9 S 0.045 5.955 10 C -0.251 4.251 11 C 0.335 3.665 12 O -0.444 6.444 13 N -0.349 5.349 14 C -0.034 4.034 15 C -0.160 4.160 16 C 0.041 3.959 17 H 0.145 0.855 18 N -0.312 5.312 19 C 0.215 3.785 20 C -0.345 4.345 21 C 0.210 3.790 22 F -0.088 7.088 23 N -0.341 5.341 24 C 0.088 3.912 25 N -0.318 5.318 26 C -0.035 4.035 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.146 0.854 34 H 0.260 0.740 35 H 0.188 0.812 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.307 -21.232 -1.322 29.410 hybrid contribution -1.606 0.353 0.512 1.722 sum 18.701 -20.879 -0.811 28.041 Atomic orbital electron populations 1.70008 1.07182 1.28993 1.49111 1.25526 0.95260 1.02138 0.92989 0.85902 0.80682 0.79851 0.80156 1.18793 1.18366 1.16218 1.22417 0.89944 0.96746 1.58176 0.91619 1.84811 1.06792 1.06316 1.97587 1.23199 0.95136 0.99389 1.07393 1.19728 0.89565 0.81765 0.75485 1.90703 1.59540 1.43250 1.50939 1.48279 1.08198 1.05086 1.73308 1.22758 0.95217 0.81990 1.03463 1.23093 0.90581 1.00084 1.02195 1.22159 0.86801 0.90481 0.96480 0.85455 1.44459 1.05089 1.69048 1.12634 1.18434 0.86791 0.85549 0.87742 1.21968 0.98690 1.16539 0.97341 1.18246 0.89745 0.91464 0.79501 1.91652 1.94193 1.91669 1.31259 1.67885 1.36997 1.22763 1.06480 1.25233 0.92006 0.86697 0.87272 1.68092 1.01889 1.22316 1.39501 1.22500 0.82141 0.96603 1.02213 0.91366 0.86796 0.86710 0.89005 0.88505 0.88858 0.85385 0.73974 0.81204 0.74437 0.91561 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.97 21.65 0.30 -54.52 16 2 C 0.05 2.69 5.50 84.85 0.47 3.15 16 3 Si 0.91 44.58 27.74 68.60 1.90 46.48 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 7 C -0.53 -29.89 10.04 67.95 0.68 -29.21 16 8 H 0.07 3.91 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -9.04 18.55 -56.49 -1.05 -10.08 16 10 C -0.10 -3.62 5.16 71.24 0.37 -3.25 16 11 C 0.55 18.35 7.87 87.66 0.69 19.04 16 12 O -0.57 -24.31 16.19 -3.02 -0.05 -24.36 16 13 N -0.61 -13.35 3.33 -811.80 -2.70 -16.05 16 14 C 0.09 1.02 6.69 86.85 0.58 1.60 16 15 C -0.12 -0.63 6.71 31.98 0.21 -0.41 16 16 C 0.15 1.22 3.05 46.18 0.14 1.36 16 17 H 0.13 0.66 6.41 -2.39 -0.02 0.64 16 18 N -0.68 -6.43 5.26 -318.53 -1.67 -8.10 16 19 C 0.46 6.38 7.71 133.10 1.03 7.41 16 20 C -0.32 -4.55 9.29 22.62 0.21 -4.34 16 21 C 0.37 6.75 8.50 84.60 0.72 7.47 16 22 F -0.11 -2.13 17.30 44.97 0.78 -1.35 16 23 N -0.62 -11.38 10.45 -201.32 -2.10 -13.48 16 24 C 0.38 5.17 12.28 180.91 2.22 7.40 16 25 N -0.59 -8.91 10.47 -197.69 -2.07 -10.98 16 26 C 0.09 1.59 6.62 86.73 0.57 2.16 16 27 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.11 3.71 7.85 -2.39 -0.02 3.69 16 29 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 30 H 0.09 1.08 7.48 -2.39 -0.02 1.07 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.46 8.01 -2.39 -0.02 0.44 16 33 H 0.13 0.01 8.14 -2.38 -0.02 -0.01 16 34 H 0.42 3.23 8.69 -92.71 -0.81 2.42 16 35 H 0.17 1.78 6.31 -2.91 -0.02 1.76 16 36 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 Total: -1.00 -78.78 343.35 1.51 -77.27 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.27 Total: 2.80 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 7.89 Total: 12.37 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -8.25 Total: -103.13 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.78 Total: -1.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.08 kcal Total: -78.78 1.51 -77.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095010323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.833 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds