Wall clock time and date at job start Fri Apr 10 2020 18:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48506 * 109.47343 * 270.00250 * 3 2 1 5 5 H 1.48500 * 109.47127 * 30.00483 * 3 2 1 6 6 H 1.48506 * 109.47173 * 150.00286 * 3 2 1 7 7 C 1.38795 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99992 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00015 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99752 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47046 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00083 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00032 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99906 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.30997 * 120.00153 * 125.00198 * 15 14 13 17 17 C 1.50699 * 120.00153 * 180.02562 * 16 15 14 18 18 N 1.46506 * 109.46928 * 125.00256 * 17 16 15 19 19 C 1.38534 * 119.99733 * 180.02562 * 18 17 16 20 20 N 1.32455 * 119.19066 * 359.72310 * 19 18 17 21 21 C 1.32302 * 120.76607 * 179.75943 * 20 19 18 22 22 C 1.38782 * 119.16581 * 0.51095 * 21 20 19 23 23 F 1.35099 * 120.74190 * 179.72701 * 22 21 20 24 24 C 1.38779 * 118.51288 * 359.74458 * 22 21 20 25 25 N 1.32306 * 119.16498 * 0.02562 * 24 22 21 26 26 H 0.97002 * 119.99787 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47019 * 59.99829 * 10 9 7 28 28 H 1.09002 * 109.47539 * 300.00018 * 10 9 7 29 29 H 0.97000 * 120.00323 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46632 * 60.00429 * 14 13 11 31 31 H 1.08995 * 109.46994 * 300.00381 * 14 13 11 32 32 H 1.08003 * 119.99616 * 305.00542 * 15 14 13 33 33 H 1.08002 * 119.99635 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.47247 * 5.00188 * 17 16 15 35 35 H 1.09001 * 109.47358 * 244.99614 * 17 16 15 36 36 H 0.96995 * 120.00050 * 359.72380 * 18 17 16 37 37 H 1.07998 * 120.41609 * 180.27723 * 21 20 19 38 38 H 1.07994 * 120.42227 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2325 -0.0021 12 8 6.3440 -2.2963 -0.0035 13 7 6.0456 -4.4947 -0.0026 14 6 7.4907 -4.7358 -0.0043 15 6 7.7524 -6.2199 -0.0040 16 6 8.5058 -6.7524 -0.9339 17 6 8.7670 -8.2365 -0.9339 18 7 8.3851 -8.7996 -2.2314 19 6 8.5352 -10.1561 -2.4690 20 7 9.0307 -10.9283 -1.5137 21 6 9.1830 -12.2285 -1.7053 22 6 8.8262 -12.7782 -2.9286 23 9 8.9734 -14.1010 -3.1606 24 6 8.3152 -11.9387 -3.9084 25 7 8.1851 -10.6480 -3.6479 26 1 -0.4850 0.8401 0.0004 27 1 3.6432 -3.4317 -0.8907 28 1 3.6440 -3.4314 0.8893 29 1 5.4290 -5.2435 -0.0026 30 1 7.9346 -4.2888 0.8852 31 1 7.9326 -4.2887 -0.8948 32 1 7.3187 -6.8444 0.7630 33 1 8.9391 -6.1278 -1.7011 34 1 8.1802 -8.7088 -0.1460 35 1 9.8269 -8.4190 -0.7566 36 1 8.0231 -8.2233 -2.9225 37 1 9.5834 -12.8536 -0.9209 38 1 8.0280 -12.3336 -4.8716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107049004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:23 Heat of formation + Delta-G solvation = -6.152201 kcal Electronic energy + Delta-G solvation = -22396.924296 eV Core-core repulsion = 18509.152005 eV Total energy + Delta-G solvation = -3887.772291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.34293 -41.43011 -39.37054 -37.44196 -35.54703 -34.36657 -33.35588 -32.45508 -30.89033 -29.63460 -27.43458 -25.67165 -25.53722 -24.27311 -23.11744 -20.80465 -20.21534 -18.90237 -18.45401 -17.92908 -17.86882 -16.62070 -16.49301 -16.34780 -15.80004 -15.43442 -15.28547 -15.18998 -14.97596 -14.61778 -14.33392 -14.03394 -13.86279 -13.58868 -13.33885 -12.98517 -12.82957 -12.77304 -12.30544 -11.95118 -11.64157 -11.53474 -11.28382 -11.02314 -10.85666 -10.63379 -10.04357 -9.85556 -9.69623 -9.51011 -9.05449 -8.99746 -8.54568 -8.52584 -6.94088 -6.30474 -4.02599 0.42442 0.43292 1.33594 2.44642 2.77755 2.91809 3.18869 3.31037 3.35631 3.44767 3.49135 3.51327 3.66897 4.05133 4.16878 4.27547 4.31642 4.38312 4.52795 4.70147 4.87783 5.02135 5.06593 5.08592 5.12531 5.27315 5.32481 5.59864 5.69442 5.73396 5.98203 6.03001 6.07658 6.15445 6.41214 6.46303 6.82489 7.53758 7.65422 7.92508 8.39959 8.42420 9.15632 10.78716 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.001539 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.992201 B =18193.356302 C =18852.467740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.735 5.735 14 C 0.147 3.853 15 C -0.137 4.137 16 C -0.167 4.167 17 C 0.167 3.833 18 N -0.689 5.689 19 C 0.558 3.442 20 N -0.545 5.545 21 C 0.175 3.825 22 C -0.077 4.077 23 F -0.127 7.127 24 C 0.177 3.823 25 N -0.546 5.546 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.401 0.599 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.419 0.581 37 H 0.179 0.821 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.114 -26.485 -3.918 33.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.389 5.389 14 C 0.023 3.977 15 C -0.156 4.156 16 C -0.187 4.187 17 C 0.043 3.957 18 N -0.326 5.326 19 C 0.201 3.799 20 N -0.267 5.267 21 C 0.006 3.994 22 C -0.105 4.105 23 F -0.107 7.107 24 C 0.007 3.993 25 N -0.268 5.268 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.235 0.765 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.257 0.743 37 H 0.196 0.804 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 21.194 -23.720 -3.549 32.006 hybrid contribution -1.110 -1.689 -0.487 2.079 sum 20.084 -25.408 -4.037 32.638 Atomic orbital electron populations 1.69938 1.05917 1.27781 1.48000 1.24712 0.94453 0.98970 0.93154 0.86734 0.81888 0.83272 0.79941 1.19201 1.19915 1.15932 1.22317 0.88240 0.97560 1.58873 0.89371 1.84792 1.09331 0.99987 1.97436 1.23279 0.93858 1.04451 1.05881 1.20312 0.90657 0.82177 0.75176 1.90707 1.58766 1.42179 1.47693 1.45933 1.07023 1.08155 1.77821 1.20310 0.82264 0.92060 1.03034 1.23066 0.97481 0.96352 0.98708 1.22909 1.00411 0.95345 0.99995 1.20345 1.01234 0.89987 0.84109 1.44189 1.68324 1.02528 1.17510 1.19389 0.88032 0.87428 0.85041 1.67995 1.20677 1.05026 1.33031 1.23141 0.91196 0.90447 0.94634 1.19126 1.12297 0.80448 0.98648 1.91522 1.94274 1.30000 1.94860 1.23134 0.90094 0.87271 0.98818 1.67974 1.23594 1.14305 1.20909 0.91925 0.88448 0.88386 0.76504 0.90367 0.90947 0.86139 0.86028 0.90699 0.90272 0.74287 0.80393 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 11 C 0.53 9.07 7.85 -10.99 -0.09 8.98 16 12 O -0.52 -10.90 15.86 5.56 0.09 -10.81 16 13 N -0.73 -8.61 5.55 -61.47 -0.34 -8.95 16 14 C 0.15 1.42 6.11 -5.19 -0.03 1.39 16 15 C -0.14 -0.88 9.24 -36.03 -0.33 -1.22 16 16 C -0.17 -0.95 9.24 -36.03 -0.33 -1.28 16 17 C 0.17 0.97 6.09 -5.19 -0.03 0.94 16 18 N -0.69 -4.77 5.70 -63.47 -0.36 -5.13 16 19 C 0.56 4.74 8.43 -322.72 -2.72 2.03 16 20 N -0.54 -4.40 9.58 -13.87 -0.13 -4.53 16 21 C 0.18 1.09 11.29 -17.15 -0.19 0.90 16 22 C -0.08 -0.50 7.38 -39.18 -0.29 -0.79 16 23 F -0.13 -0.85 17.30 2.25 0.04 -0.81 16 24 C 0.18 1.14 11.29 -17.15 -0.19 0.95 16 25 N -0.55 -4.63 10.46 -13.87 -0.14 -4.78 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.40 3.61 8.46 -40.82 -0.35 3.26 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 32 H 0.12 0.66 7.84 -52.48 -0.41 0.25 16 33 H 0.12 0.66 7.84 -52.49 -0.41 0.25 16 34 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.42 2.59 8.58 -40.82 -0.35 2.24 16 37 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -35.34 357.60 -9.61 -44.96 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.44 Total: 1.10 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.77 Total: -2.17 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.21 Total: -49.04 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 0.04 Total: -0.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.34 -9.61 -44.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107049004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.806 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds