Wall clock time and date at job start Fri Apr 10 2020 18:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48506 * 109.47343 * 270.00250 * 3 2 1 5 5 H 1.48500 * 109.47127 * 30.00483 * 3 2 1 6 6 H 1.48506 * 109.47173 * 150.00286 * 3 2 1 7 7 C 1.38795 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99992 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00015 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99752 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47046 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00083 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00032 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99906 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.30997 * 120.00153 * 125.00198 * 15 14 13 17 17 C 1.50699 * 120.00153 * 180.02562 * 16 15 14 18 18 N 1.46506 * 109.46928 * 125.00256 * 17 16 15 19 19 C 1.38534 * 119.99733 * 180.02562 * 18 17 16 20 20 N 1.32455 * 119.19066 * 359.72310 * 19 18 17 21 21 C 1.32302 * 120.76607 * 179.75943 * 20 19 18 22 22 C 1.38782 * 119.16581 * 0.51095 * 21 20 19 23 23 F 1.35099 * 120.74190 * 179.72701 * 22 21 20 24 24 C 1.38779 * 118.51288 * 359.74458 * 22 21 20 25 25 N 1.32306 * 119.16498 * 0.02562 * 24 22 21 26 26 H 0.97002 * 119.99787 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47019 * 59.99829 * 10 9 7 28 28 H 1.09002 * 109.47539 * 300.00018 * 10 9 7 29 29 H 0.97000 * 120.00323 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46632 * 60.00429 * 14 13 11 31 31 H 1.08995 * 109.46994 * 300.00381 * 14 13 11 32 32 H 1.08003 * 119.99616 * 305.00542 * 15 14 13 33 33 H 1.08002 * 119.99635 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.47247 * 5.00188 * 17 16 15 35 35 H 1.09001 * 109.47358 * 244.99614 * 17 16 15 36 36 H 0.96995 * 120.00050 * 359.72380 * 18 17 16 37 37 H 1.07998 * 120.41609 * 180.27723 * 21 20 19 38 38 H 1.07994 * 120.42227 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2325 -0.0021 12 8 6.3440 -2.2963 -0.0035 13 7 6.0456 -4.4947 -0.0026 14 6 7.4907 -4.7358 -0.0043 15 6 7.7524 -6.2199 -0.0040 16 6 8.5058 -6.7524 -0.9339 17 6 8.7670 -8.2365 -0.9339 18 7 8.3851 -8.7996 -2.2314 19 6 8.5352 -10.1561 -2.4690 20 7 9.0307 -10.9283 -1.5137 21 6 9.1830 -12.2285 -1.7053 22 6 8.8262 -12.7782 -2.9286 23 9 8.9734 -14.1010 -3.1606 24 6 8.3152 -11.9387 -3.9084 25 7 8.1851 -10.6480 -3.6479 26 1 -0.4850 0.8401 0.0004 27 1 3.6432 -3.4317 -0.8907 28 1 3.6440 -3.4314 0.8893 29 1 5.4290 -5.2435 -0.0026 30 1 7.9346 -4.2888 0.8852 31 1 7.9326 -4.2887 -0.8948 32 1 7.3187 -6.8444 0.7630 33 1 8.9391 -6.1278 -1.7011 34 1 8.1802 -8.7088 -0.1460 35 1 9.8269 -8.4190 -0.7566 36 1 8.0231 -8.2233 -2.9225 37 1 9.5834 -12.8536 -0.9209 38 1 8.0280 -12.3336 -4.8716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107049004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:22 Heat of formation + Delta-G solvation = -30.078260 kcal Electronic energy + Delta-G solvation = -22397.961808 eV Core-core repulsion = 18509.152005 eV Total energy + Delta-G solvation = -3888.809803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.84075 -41.93825 -40.65759 -38.02869 -36.40271 -34.88176 -34.67509 -34.20198 -31.70464 -30.71590 -28.25471 -27.80195 -26.09649 -24.93846 -23.67029 -21.90595 -20.96209 -19.88003 -19.40738 -18.92756 -18.39176 -17.87389 -17.46907 -17.08712 -17.04822 -16.74354 -16.29443 -15.93564 -15.71175 -15.63736 -15.14973 -15.06173 -14.94258 -14.81503 -14.47909 -14.07186 -13.83906 -13.51163 -13.33846 -13.20764 -13.00174 -12.83739 -12.66263 -12.18344 -12.07124 -11.86435 -11.36848 -11.17113 -11.10768 -10.54195 -10.47193 -10.22338 -10.03541 -9.05246 -8.99633 -8.51543 -6.22501 -0.08013 -0.05391 0.75827 1.03709 1.31706 1.47694 1.55645 1.58446 1.95518 2.24674 2.37459 2.66432 2.73506 2.86802 2.97216 3.05306 3.57153 3.65631 3.81800 3.88782 3.91580 4.03351 4.22922 4.32808 4.47636 4.53531 4.56870 4.63701 4.69142 4.83714 5.23675 5.32727 5.53067 5.58254 5.67948 5.70604 5.94542 6.11396 6.31447 6.45955 6.93675 7.13725 7.18088 8.60782 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.001539 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.992201 B =18193.356302 C =18852.467740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.112 4.112 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.709 5.709 14 C 0.146 3.854 15 C -0.137 4.137 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.688 5.688 19 C 0.543 3.457 20 N -0.559 5.559 21 C 0.175 3.825 22 C -0.081 4.081 23 F -0.129 7.129 24 C 0.173 3.827 25 N -0.567 5.567 26 H 0.277 0.723 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.417 0.583 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.421 0.579 37 H 0.206 0.794 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.530 -27.849 -3.902 35.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.263 4.263 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.363 5.363 14 C 0.024 3.976 15 C -0.156 4.156 16 C -0.169 4.169 17 C 0.049 3.951 18 N -0.325 5.325 19 C 0.186 3.814 20 N -0.282 5.282 21 C 0.006 3.994 22 C -0.109 4.109 23 F -0.108 7.108 24 C 0.004 3.996 25 N -0.290 5.290 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.259 0.741 37 H 0.222 0.778 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 22.607 -25.150 -3.533 34.001 hybrid contribution -1.490 -1.504 -0.525 2.181 sum 21.117 -26.654 -4.058 34.246 Atomic orbital electron populations 1.70017 1.07315 1.29019 1.49119 1.25567 0.95271 1.02270 0.92870 0.85863 0.80685 0.79582 0.80208 1.18713 1.18349 1.16036 1.22472 0.90295 0.96706 1.58299 0.91946 1.84708 1.06386 1.06293 1.97595 1.23278 0.95935 0.99548 1.07523 1.19949 0.89369 0.83368 0.75282 1.90696 1.59292 1.43867 1.50310 1.45716 1.08568 1.06749 1.75272 1.20404 0.80368 0.94281 1.02592 1.22860 0.98608 0.94364 0.99813 1.22904 0.99282 0.95284 0.99391 1.20304 1.01305 0.89738 0.83770 1.44234 1.68181 1.02219 1.17851 1.19645 0.88398 0.87995 0.85367 1.68049 1.21339 1.05729 1.33099 1.23608 0.90344 0.90190 0.95271 1.19165 1.12452 0.80364 0.98876 1.91520 1.94310 1.30083 1.94890 1.23560 0.89384 0.86798 0.99830 1.68013 1.24570 1.15217 1.21166 0.91376 0.86851 0.86727 0.74556 0.90962 0.91447 0.84586 0.85650 0.90569 0.90155 0.74064 0.77752 0.78021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.62 13.97 21.65 0.30 -55.32 16 2 C 0.05 2.67 5.50 84.86 0.47 3.14 16 3 Si 0.91 44.77 27.74 68.60 1.90 46.67 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 7 C -0.53 -30.68 10.04 67.95 0.68 -30.00 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 S -0.18 -8.81 18.55 -56.49 -1.05 -9.86 16 10 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 11 C 0.53 17.49 7.85 87.66 0.69 18.18 16 12 O -0.56 -23.29 15.86 -3.04 -0.05 -23.33 16 13 N -0.71 -15.02 5.55 -466.78 -2.59 -17.61 16 14 C 0.15 2.55 6.11 85.63 0.52 3.07 16 15 C -0.14 -1.42 9.24 25.65 0.24 -1.18 16 16 C -0.15 -1.35 9.24 25.65 0.24 -1.11 16 17 C 0.17 1.66 6.09 85.63 0.52 2.18 16 18 N -0.69 -8.54 5.70 -354.72 -2.02 -10.56 16 19 C 0.54 8.61 8.43 261.46 2.20 10.81 16 20 N -0.56 -8.25 9.58 -197.78 -1.90 -10.14 16 21 C 0.17 1.89 11.29 84.75 0.96 2.85 16 22 C -0.08 -0.93 7.38 22.53 0.17 -0.76 16 23 F -0.13 -1.53 17.30 44.97 0.78 -0.75 16 24 C 0.17 2.03 11.29 84.75 0.96 2.99 16 25 N -0.57 -9.05 10.46 -197.78 -2.07 -11.12 16 26 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.42 6.26 8.46 -92.71 -0.78 5.47 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 32 H 0.14 1.05 7.84 -2.91 -0.02 1.03 16 33 H 0.13 1.08 7.84 -2.91 -0.02 1.06 16 34 H 0.08 0.75 7.79 -2.39 -0.02 0.73 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.42 4.64 8.58 -92.71 -0.80 3.85 16 37 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -76.67 357.60 0.89 -75.78 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -0.50 Total: 9.72 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 8.08 Total: 6.53 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -8.27 Total: -104.76 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.78 Total: -0.75 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -76.67 0.89 -75.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107049004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.705 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds