Wall clock time and date at job start Fri Apr 10 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48501 * 109.46591 * 269.99983 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99317 * 3 2 1 6 6 H 1.48491 * 109.47263 * 149.99596 * 3 2 1 7 7 C 1.38952 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99715 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00016 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99963 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47119 * 173.80237 * 12 10 9 14 14 C 1.47014 * 110.99674 * 170.00030 * 13 12 10 15 15 C 1.53106 * 109.25554 * 182.39664 * 14 13 12 16 16 O 1.43023 * 109.25491 * 303.15313 * 15 14 13 17 17 C 1.43014 * 113.73811 * 58.67346 * 16 15 14 18 18 H 1.08996 * 109.54194 * 61.28547 * 17 16 15 19 19 C 1.50700 * 109.50640 * 181.39234 * 17 16 15 20 20 C 1.38232 * 119.98527 * 24.50326 * 19 17 16 21 21 C 1.38190 * 120.04958 * 180.27812 * 20 19 17 22 22 C 1.38496 * 120.02491 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.01267 * 180.02562 * 22 21 20 24 24 C 1.38399 * 119.97264 * 359.97438 * 22 21 20 25 25 C 1.38435 * 119.95244 * 0.02562 * 24 22 21 26 26 F 1.35096 * 120.01413 * 179.97438 * 25 24 22 27 27 C 1.47008 * 111.00288 * 293.64158 * 13 12 10 28 28 H 0.96999 * 119.99885 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99784 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47186 * 53.80548 * 12 10 9 31 31 H 1.08999 * 109.46987 * 293.80357 * 12 10 9 32 32 H 1.08997 * 109.50674 * 302.32847 * 14 13 12 33 33 H 1.08997 * 109.50844 * 62.46505 * 14 13 12 34 34 H 1.08997 * 109.50727 * 63.08364 * 15 14 13 35 35 H 1.08995 * 109.50693 * 183.17784 * 15 14 13 36 36 H 1.08004 * 119.97370 * 0.26383 * 20 19 17 37 37 H 1.08002 * 119.98574 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.01997 * 180.02562 * 24 22 21 39 39 H 1.09001 * 109.51217 * 57.66936 * 27 13 12 40 40 H 1.09001 * 109.50695 * 297.53812 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0016 10 6 1.9974 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0031 12 6 1.2439 -4.8630 0.0032 13 7 2.1916 -5.9755 -0.1452 14 6 1.5285 -7.2669 0.0874 15 6 2.5622 -8.3914 -0.0179 16 8 3.1961 -8.3310 -1.2985 17 6 3.8524 -7.0871 -1.5580 18 1 4.6392 -6.9293 -0.8205 19 6 4.4552 -7.1146 -2.9389 20 6 3.9339 -7.9563 -3.9036 21 6 4.4893 -7.9868 -5.1686 22 6 5.5694 -7.1743 -5.4710 23 9 6.1118 -7.2039 -6.7080 24 6 6.0921 -6.3313 -4.5059 25 6 5.5349 -6.3015 -3.2390 26 9 6.0444 -5.4795 -2.2958 27 6 2.8318 -5.9494 -1.4683 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0016 30 1 0.5370 -4.8748 -0.8264 31 1 0.7027 -4.9696 0.9433 32 1 1.0835 -7.2735 1.0824 33 1 0.7504 -7.4165 -0.6611 34 1 3.3112 -8.2718 0.7649 35 1 2.0653 -9.3546 0.0979 36 1 3.0921 -8.5907 -3.6684 37 1 4.0815 -8.6451 -5.9215 38 1 6.9341 -5.6970 -4.7410 39 1 3.3381 -4.9944 -1.6089 40 1 2.0746 -6.0780 -2.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187291156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:33 Heat of formation + Delta-G solvation = -152.265872 kcal Electronic energy + Delta-G solvation = -27736.239239 eV Core-core repulsion = 23379.458151 eV Total energy + Delta-G solvation = -4356.781088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.13048 -50.06316 -41.22236 -40.09301 -39.29478 -36.66986 -35.78633 -33.76290 -33.27982 -31.89648 -30.65414 -29.81122 -27.26096 -25.55890 -25.27632 -24.20268 -22.85908 -21.46170 -21.03889 -19.90288 -19.30320 -18.43583 -17.88567 -17.74904 -17.21119 -17.00777 -16.71064 -16.55607 -16.51629 -16.40448 -16.27122 -15.86795 -15.58348 -15.51075 -15.18920 -15.13192 -14.81059 -14.35325 -13.90989 -13.68380 -13.46914 -13.32459 -13.19960 -12.89629 -12.83044 -12.52494 -12.43355 -12.39073 -12.25178 -12.13661 -11.65766 -11.45885 -10.90260 -10.28400 -10.13288 -10.01129 -9.71456 -9.33005 -8.47793 -5.96161 -0.20791 -0.05089 1.36188 1.40115 1.52756 2.04060 2.20989 2.27551 2.51706 2.64329 2.79978 3.18759 3.26150 3.34787 3.55721 3.70586 3.83112 3.85312 3.97336 4.01273 4.13204 4.21836 4.32382 4.38739 4.46264 4.56578 4.64724 4.70662 4.76644 4.80034 4.85306 4.87407 4.97679 5.03603 5.16536 5.39867 5.67778 5.74893 5.94617 6.04478 6.12299 6.59723 7.12340 7.55354 8.11786 8.69654 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.003522 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.744546 B = 7947.435541 C = 9570.056880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.614 6.614 12 C 0.059 3.941 13 N -0.535 5.535 14 C 0.014 3.986 15 C 0.064 3.936 16 O -0.377 6.377 17 C 0.153 3.847 18 H 0.059 0.941 19 C -0.137 4.137 20 C -0.031 4.031 21 C -0.151 4.151 22 C 0.125 3.875 23 F -0.132 7.132 24 C -0.196 4.196 25 C 0.118 3.882 26 F -0.142 7.142 27 C 0.039 3.961 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.140 0.860 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.159 0.841 39 H 0.064 0.936 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -19.947 -7.527 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.499 6.499 12 C -0.072 4.072 13 N -0.260 5.260 14 C -0.113 4.113 15 C -0.012 4.012 16 O -0.296 6.296 17 C 0.095 3.905 18 H 0.077 0.923 19 C -0.139 4.139 20 C -0.049 4.049 21 C -0.169 4.169 22 C 0.106 3.894 23 F -0.111 7.111 24 C -0.215 4.215 25 C 0.099 3.901 26 F -0.120 7.120 27 C -0.090 4.090 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.187 0.813 37 H 0.194 0.806 38 H 0.177 0.823 39 H 0.082 0.918 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.368 -19.858 -7.295 21.422 hybrid contribution -0.333 1.724 -0.210 1.768 sum 3.035 -18.135 -7.505 19.860 Atomic orbital electron populations 1.69665 1.06750 1.29268 1.50401 1.25990 0.96518 1.02249 0.96301 0.84971 0.77928 0.77090 0.78627 1.19715 1.19353 1.19916 1.19629 0.92604 0.84054 1.49902 0.90550 1.41925 1.09274 1.04650 1.65275 1.20804 0.88352 0.85975 0.82343 1.90501 1.15712 1.87778 1.55957 1.21767 0.93184 0.88285 1.03966 1.61717 1.31768 1.02764 1.29742 1.23008 0.96731 0.87941 1.03608 1.22922 0.94495 0.99505 0.84273 1.87868 1.71400 1.33337 1.37018 1.20373 0.93401 0.84098 0.92635 0.92268 1.19779 0.96933 1.00179 0.96994 1.20960 0.98685 0.95179 0.90038 1.21540 0.95801 1.00844 0.98741 1.17416 0.94544 0.97618 0.79818 1.91530 1.85037 1.95388 1.39103 1.21104 1.04737 1.03966 0.91696 1.17384 0.94316 0.91755 0.86655 1.91553 1.86264 1.70295 1.63905 1.22623 0.97200 0.99436 0.89713 0.91288 0.77013 0.91483 0.86367 0.87483 0.92723 0.92691 0.84258 0.81345 0.80583 0.82346 0.91775 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.69 5.29 -306.99 -1.62 -31.31 16 10 C 0.44 21.10 7.35 87.66 0.64 21.75 16 11 O -0.61 -34.61 14.25 -3.05 -0.04 -34.66 16 12 C 0.06 2.03 5.45 85.56 0.47 2.49 16 13 N -0.53 -17.28 4.42 -899.78 -3.98 -21.26 16 14 C 0.01 0.31 5.65 86.32 0.49 0.80 16 15 C 0.06 1.23 7.01 72.02 0.50 1.73 16 16 O -0.38 -8.88 9.29 -148.98 -1.38 -10.27 16 17 C 0.15 4.46 2.79 29.88 0.08 4.55 16 18 H 0.06 2.00 7.80 -2.39 -0.02 1.98 16 19 C -0.14 -3.61 5.08 -19.81 -0.10 -3.71 16 20 C -0.03 -0.60 9.35 22.26 0.21 -0.39 16 21 C -0.15 -2.52 10.03 22.32 0.22 -2.30 16 22 C 0.13 2.57 7.30 22.37 0.16 2.73 16 23 F -0.13 -2.69 17.27 44.97 0.78 -1.91 16 24 C -0.20 -4.63 10.01 22.36 0.22 -4.41 16 25 C 0.12 3.39 7.24 22.37 0.16 3.55 16 26 F -0.14 -4.95 16.57 44.97 0.75 -4.21 16 27 C 0.04 1.31 4.57 86.32 0.39 1.70 16 28 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 30 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 31 H 0.12 3.46 8.04 -2.39 -0.02 3.44 16 32 H 0.11 1.90 8.09 -2.39 -0.02 1.88 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.17 2.62 7.34 -2.91 -0.02 2.60 16 37 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.06 2.78 6.10 -2.39 -0.01 2.77 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.77 345.53 1.90 -68.86 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.36 Total: 28.68 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.74 Total: 10.07 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -5.32 Total: -102.10 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.43 Total: -44.92 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 1.52 Total: -6.12 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.77 1.90 -68.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187291156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.405 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds