Wall clock time and date at job start Fri Apr 10 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38245 * 120.00539 * 2 1 4 4 C 1.38210 * 120.00422 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99828 * 359.97342 * 5 4 3 7 7 C 1.38218 * 119.99559 * 180.16939 * 2 1 3 8 8 C 1.50694 * 120.00226 * 0.06790 * 7 2 1 9 9 N 1.46502 * 109.47659 * 80.21019 * 8 7 2 10 10 C 1.34774 * 120.00353 * 180.02562 * 9 8 7 11 11 S 1.71202 * 119.99744 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99854 * 180.02562 * 10 9 8 13 13 C 1.39139 * 119.99447 * 174.25592 * 12 10 9 14 14 C 1.39504 * 119.84069 * 319.00198 * 13 12 10 15 15 C 1.36357 * 120.16754 * 179.76147 * 14 13 12 16 16 C 1.40877 * 119.82893 * 0.51837 * 15 14 13 17 17 C 1.41149 * 120.15920 * 179.71736 * 16 15 14 18 18 H 1.07996 * 119.99707 * 205.27416 * 17 16 15 19 19 C 1.39882 * 119.99960 * 25.27503 * 17 16 15 20 20 N 1.30885 * 120.00335 * 16.90865 * 19 17 16 21 21 Si 1.86798 * 119.99832 * 196.90776 * 19 17 16 22 22 H 1.48498 * 109.47438 * 59.99928 * 21 19 17 23 23 H 1.48504 * 109.47284 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47497 * 299.99847 * 21 19 17 25 25 C 1.40873 * 119.68071 * 359.73575 * 16 15 14 26 26 C 1.36356 * 119.82732 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.47125 * 89.99785 * 1 2 3 28 28 H 1.09000 * 109.47420 * 210.00075 * 1 2 3 29 29 H 1.09003 * 109.46648 * 330.00014 * 1 2 3 30 30 H 1.08002 * 119.99840 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.00033 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.00415 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.00427 * 180.02562 * 6 5 4 34 34 H 1.09009 * 109.47189 * 200.21113 * 8 7 2 35 35 H 1.09004 * 109.47373 * 320.20707 * 8 7 2 36 36 H 0.96999 * 119.99679 * 0.02562 * 9 8 7 37 37 H 0.96997 * 119.99892 * 354.25593 * 12 10 9 38 38 H 1.07998 * 119.91893 * 0.02562 * 14 13 12 39 39 H 1.08004 * 120.08580 * 180.25593 * 15 14 13 40 40 H 0.97000 * 120.00337 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.08748 * 179.97438 * 25 16 15 42 42 H 1.08005 * 119.91821 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0027 7 6 2.1980 -1.1970 -0.0035 8 6 1.4445 -2.5021 -0.0089 9 7 0.9982 -2.8028 -1.3716 10 6 0.2992 -3.9283 -1.6188 11 16 -0.0667 -5.0068 -0.3406 12 7 -0.1108 -4.2051 -2.8725 13 6 -0.7270 -5.4213 -3.1502 14 6 -0.2393 -6.5942 -2.5734 15 6 -0.8411 -7.7891 -2.8371 16 6 -1.9511 -7.8386 -3.7031 17 6 -2.5756 -9.0725 -3.9856 18 1 -3.1230 -9.2021 -4.9075 19 6 -2.4856 -10.1275 -3.0714 20 7 -2.1241 -9.8934 -1.8355 21 14 -2.8814 -11.8703 -3.6146 22 1 -1.9632 -12.2674 -4.7121 23 1 -2.7104 -12.7974 -2.4672 24 1 -4.2847 -11.9321 -4.0966 25 6 -2.4347 -6.6508 -4.2860 26 6 -1.8257 -5.4627 -4.0091 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1325 0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3517 -0.0002 0.0024 33 1 4.1205 -2.1324 0.0040 34 1 2.0976 -3.3003 0.3440 35 1 0.5782 -2.4243 0.6482 36 1 1.2059 -2.1919 -2.0958 37 1 0.0236 -3.5565 -3.5811 38 1 0.6143 -6.5552 -1.9130 39 1 -0.4650 -8.6958 -2.3866 40 1 -2.0613 -10.6250 -1.2016 41 1 -3.2850 -6.6812 -4.9511 42 1 -2.1949 -4.5511 -4.4555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225308778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:48 Heat of formation + Delta-G solvation = 63.960419 kcal Electronic energy + Delta-G solvation = -23525.017401 eV Core-core repulsion = 20174.594990 eV Total energy + Delta-G solvation = -3350.422412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.09629 -38.93431 -37.20381 -35.15847 -33.39745 -32.90297 -31.62311 -29.51884 -29.04237 -27.49710 -26.27370 -24.69220 -23.43871 -22.41017 -21.28759 -21.10175 -20.44553 -18.10489 -17.40265 -17.31950 -16.45817 -16.08352 -15.42898 -15.23639 -15.09954 -14.66885 -14.39693 -13.93304 -13.91069 -13.44256 -13.34594 -13.09456 -12.73517 -12.53968 -12.35818 -12.16337 -12.07803 -11.76043 -11.41007 -11.26312 -11.12215 -11.06709 -10.87040 -10.55120 -10.44064 -9.87854 -9.63938 -9.32834 -9.21208 -8.98356 -8.83256 -7.66773 -7.36277 -6.99914 -6.77450 -6.24012 -4.31546 0.89497 1.05252 1.75629 2.51466 2.84660 3.07176 3.08653 3.10652 3.16638 3.27888 3.53131 3.93064 4.04329 4.36759 4.49613 4.62002 4.64133 4.71343 4.97147 5.06342 5.32019 5.35193 5.45913 5.53945 5.58878 5.71549 5.75758 5.93478 6.09508 6.13272 6.17084 6.28550 6.34753 6.39225 6.60046 6.66508 7.00357 7.05251 7.13717 7.24314 7.32357 7.62281 7.69085 7.96050 8.07035 8.21934 8.29237 8.65382 8.87893 8.98619 10.17807 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.002345 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.471855 B =11935.774473 C =12249.175018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.130 4.130 6 C -0.093 4.093 7 C -0.112 4.112 8 C 0.172 3.828 9 N -0.695 5.695 10 C 0.541 3.459 11 S -0.636 6.636 12 N -0.592 5.592 13 C -0.038 4.038 14 C -0.038 4.038 15 C -0.165 4.165 16 C 0.119 3.881 17 C -0.453 4.453 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.774 5.774 21 Si 0.909 3.091 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.226 4.226 26 C -0.081 4.081 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.390 0.610 37 H 0.389 0.611 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.284 0.716 41 H 0.095 0.905 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.086 19.071 1.274 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.128 4.128 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.113 4.113 8 C 0.049 3.951 9 N -0.327 5.327 10 C 0.183 3.817 11 S -0.508 6.508 12 N -0.210 5.210 13 C -0.130 4.130 14 C -0.060 4.060 15 C -0.185 4.185 16 C 0.116 3.884 17 C -0.482 4.482 18 H 0.097 0.903 19 C -0.147 4.147 20 N -0.398 5.398 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.247 4.247 26 C -0.102 4.102 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.226 0.774 37 H 0.224 0.776 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.860 18.164 2.498 20.818 hybrid contribution 0.122 0.545 -1.367 1.476 sum 9.982 18.709 1.131 21.236 Atomic orbital electron populations 1.20922 0.90863 1.03508 1.02667 1.19885 0.96256 0.92504 0.97821 1.21053 0.94291 0.97477 1.01516 1.21195 0.94318 0.98148 0.99105 1.21152 1.00021 0.92408 1.01202 1.21163 0.93379 0.98552 0.98083 1.19851 0.93858 0.94194 1.03364 1.20383 0.99344 0.93152 0.82229 1.44841 1.55110 1.21402 1.11327 1.22414 0.82883 0.86704 0.89712 1.93428 1.74472 1.49541 1.33335 1.41978 1.54945 1.18429 1.05695 1.16890 1.02143 0.82240 1.11750 1.20512 0.99185 0.90988 0.95284 1.20875 0.97485 0.96481 1.03684 1.17713 0.89671 0.91924 0.89053 1.19583 1.28699 0.95694 1.04176 0.90318 1.25983 0.93170 1.01401 0.94127 1.69878 1.32645 1.34477 1.02805 0.86353 0.79966 0.81067 0.79278 1.18777 1.20241 1.18981 1.20463 1.02881 0.92137 1.09221 1.19982 0.94032 0.96976 0.99191 0.91092 0.90503 0.91376 0.85955 0.86031 0.85904 0.85578 0.89195 0.88834 0.77435 0.77562 0.87135 0.86196 0.90501 0.88655 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.60 36.00 0.35 -0.68 16 2 C -0.06 -0.57 5.88 -104.63 -0.62 -1.19 16 3 C -0.13 -0.99 9.70 -39.59 -0.38 -1.37 16 4 C -0.11 -0.81 10.05 -39.59 -0.40 -1.21 16 5 C -0.13 -1.01 10.05 -39.58 -0.40 -1.40 16 6 C -0.09 -0.82 9.67 -39.58 -0.38 -1.21 16 7 C -0.11 -1.08 5.25 -104.62 -0.55 -1.62 16 8 C 0.17 2.00 4.65 -5.20 -0.02 1.98 16 9 N -0.69 -8.48 5.55 -63.21 -0.35 -8.83 16 10 C 0.54 9.24 7.73 -86.92 -0.67 8.57 16 11 S -0.64 -14.28 24.96 -107.50 -2.68 -16.97 16 12 N -0.59 -10.04 5.29 -11.28 -0.06 -10.10 16 13 C -0.04 -0.81 5.94 -83.60 -0.50 -1.31 16 14 C -0.04 -0.93 7.76 -39.79 -0.31 -1.24 16 15 C -0.16 -4.37 8.63 -39.26 -0.34 -4.71 16 16 C 0.12 3.17 5.57 -106.80 -0.59 2.58 16 17 C -0.45 -11.87 9.04 -37.86 -0.34 -12.21 16 18 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 19 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 20 N -0.77 -20.47 10.94 55.54 0.61 -19.86 16 21 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 25 C -0.23 -5.45 9.74 -39.26 -0.38 -5.83 16 26 C -0.08 -1.76 9.90 -39.78 -0.39 -2.15 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.74 6.13 -51.93 -0.32 0.43 16 29 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 1.02 8.04 -52.49 -0.42 0.59 16 34 H 0.09 1.15 7.85 -51.92 -0.41 0.74 16 35 H 0.09 1.20 6.25 -51.93 -0.32 0.88 16 36 H 0.39 3.74 8.48 -40.82 -0.35 3.39 16 37 H 0.39 5.04 8.84 -40.82 -0.36 4.67 16 38 H 0.11 2.74 6.16 -47.06 -0.29 2.45 16 39 H 0.12 3.33 6.17 -52.48 -0.32 3.01 16 40 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -31.47 362.60 -13.37 -44.84 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.30 Total: 13.18 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -6.02 Total: -21.27 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.20 Total: -38.79 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: -14.28 SS G_CDS: -2.68 Total: -16.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.47 -13.37 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225308778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.803 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds