Wall clock time and date at job start Fri Apr 10 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38245 * 120.00539 * 2 1 4 4 C 1.38210 * 120.00422 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99828 * 359.97342 * 5 4 3 7 7 C 1.38218 * 119.99559 * 180.16939 * 2 1 3 8 8 C 1.50694 * 120.00226 * 0.06790 * 7 2 1 9 9 N 1.46502 * 109.47659 * 80.21019 * 8 7 2 10 10 C 1.34774 * 120.00353 * 180.02562 * 9 8 7 11 11 S 1.71202 * 119.99744 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99854 * 180.02562 * 10 9 8 13 13 C 1.39139 * 119.99447 * 174.25592 * 12 10 9 14 14 C 1.39504 * 119.84069 * 319.00198 * 13 12 10 15 15 C 1.36357 * 120.16754 * 179.76147 * 14 13 12 16 16 C 1.40877 * 119.82893 * 0.51837 * 15 14 13 17 17 C 1.41149 * 120.15920 * 179.71736 * 16 15 14 18 18 H 1.07996 * 119.99707 * 205.27416 * 17 16 15 19 19 C 1.39882 * 119.99960 * 25.27503 * 17 16 15 20 20 N 1.30885 * 120.00335 * 16.90865 * 19 17 16 21 21 Si 1.86798 * 119.99832 * 196.90776 * 19 17 16 22 22 H 1.48498 * 109.47438 * 59.99928 * 21 19 17 23 23 H 1.48504 * 109.47284 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47497 * 299.99847 * 21 19 17 25 25 C 1.40873 * 119.68071 * 359.73575 * 16 15 14 26 26 C 1.36356 * 119.82732 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.47125 * 89.99785 * 1 2 3 28 28 H 1.09000 * 109.47420 * 210.00075 * 1 2 3 29 29 H 1.09003 * 109.46648 * 330.00014 * 1 2 3 30 30 H 1.08002 * 119.99840 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.00033 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.00415 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.00427 * 180.02562 * 6 5 4 34 34 H 1.09009 * 109.47189 * 200.21113 * 8 7 2 35 35 H 1.09004 * 109.47373 * 320.20707 * 8 7 2 36 36 H 0.96999 * 119.99679 * 0.02562 * 9 8 7 37 37 H 0.96997 * 119.99892 * 354.25593 * 12 10 9 38 38 H 1.07998 * 119.91893 * 0.02562 * 14 13 12 39 39 H 1.08004 * 120.08580 * 180.25593 * 15 14 13 40 40 H 0.97000 * 120.00337 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.08748 * 179.97438 * 25 16 15 42 42 H 1.08005 * 119.91821 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0027 7 6 2.1980 -1.1970 -0.0035 8 6 1.4445 -2.5021 -0.0089 9 7 0.9982 -2.8028 -1.3716 10 6 0.2992 -3.9283 -1.6188 11 16 -0.0667 -5.0068 -0.3406 12 7 -0.1108 -4.2051 -2.8725 13 6 -0.7270 -5.4213 -3.1502 14 6 -0.2393 -6.5942 -2.5734 15 6 -0.8411 -7.7891 -2.8371 16 6 -1.9511 -7.8386 -3.7031 17 6 -2.5756 -9.0725 -3.9856 18 1 -3.1230 -9.2021 -4.9075 19 6 -2.4856 -10.1275 -3.0714 20 7 -2.1241 -9.8934 -1.8355 21 14 -2.8814 -11.8703 -3.6146 22 1 -1.9632 -12.2674 -4.7121 23 1 -2.7104 -12.7974 -2.4672 24 1 -4.2847 -11.9321 -4.0966 25 6 -2.4347 -6.6508 -4.2860 26 6 -1.8257 -5.4627 -4.0091 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1325 0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3517 -0.0002 0.0024 33 1 4.1205 -2.1324 0.0040 34 1 2.0976 -3.3003 0.3440 35 1 0.5782 -2.4243 0.6482 36 1 1.2059 -2.1919 -2.0958 37 1 0.0236 -3.5565 -3.5811 38 1 0.6143 -6.5552 -1.9130 39 1 -0.4650 -8.6958 -2.3866 40 1 -2.0613 -10.6250 -1.2016 41 1 -3.2850 -6.6812 -4.9511 42 1 -2.1949 -4.5511 -4.4555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225308778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:48 Heat of formation + Delta-G solvation = 47.718265 kcal Electronic energy + Delta-G solvation = -23525.721714 eV Core-core repulsion = 20174.594990 eV Total energy + Delta-G solvation = -3351.126724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01442 -40.35720 -38.75034 -36.62008 -35.02119 -33.71221 -32.54837 -31.41392 -30.76752 -28.32138 -27.36658 -26.26104 -24.96072 -23.13490 -22.98499 -22.45690 -21.68488 -19.52290 -19.20780 -18.87271 -17.23209 -17.14102 -16.87438 -16.75510 -16.22108 -15.80699 -15.65153 -15.58089 -14.94338 -14.63058 -14.44049 -14.04634 -13.93626 -13.84387 -13.79028 -13.54296 -13.19328 -12.99856 -12.92193 -12.75455 -12.54334 -12.31029 -12.14684 -11.94196 -11.85468 -11.67125 -11.43698 -11.10112 -10.41197 -9.87471 -9.62539 -9.53566 -9.13066 -8.81040 -8.63612 -8.06406 -6.27497 0.17286 0.23380 0.42921 0.97541 1.13079 1.26736 1.39992 1.52635 1.56742 1.74331 2.22105 2.64906 2.77530 2.90666 3.55760 3.78329 3.84830 3.98291 4.10859 4.30020 4.41195 4.42097 4.53763 4.58149 4.68077 4.75069 4.79287 4.83182 4.88107 5.06924 5.08856 5.14436 5.18214 5.27232 5.36974 5.45651 5.51894 5.57557 5.65670 5.74259 5.80614 6.01413 6.04869 6.14148 6.21557 6.38476 6.59078 6.72894 6.94639 7.06861 8.33953 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.002345 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.471855 B =11935.774473 C =12249.175018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.107 4.107 5 C -0.133 4.133 6 C -0.103 4.103 7 C -0.123 4.123 8 C 0.177 3.823 9 N -0.658 5.658 10 C 0.574 3.426 11 S -0.738 6.738 12 N -0.581 5.581 13 C -0.020 4.020 14 C -0.044 4.044 15 C -0.190 4.190 16 C 0.089 3.911 17 C -0.488 4.488 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.819 5.819 21 Si 0.985 3.015 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.256 1.256 25 C -0.238 4.238 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.412 0.588 37 H 0.417 0.583 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.287 0.713 41 H 0.109 0.891 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.840 22.304 -0.206 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.071 4.071 3 C -0.147 4.147 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.121 4.121 7 C -0.124 4.124 8 C 0.054 3.946 9 N -0.288 5.288 10 C 0.210 3.790 11 S -0.612 6.612 12 N -0.203 5.203 13 C -0.114 4.114 14 C -0.066 4.066 15 C -0.211 4.211 16 C 0.086 3.914 17 C -0.517 4.517 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.444 5.444 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.258 4.258 26 C -0.096 4.096 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.252 0.748 37 H 0.257 0.743 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.650 21.490 0.987 24.005 hybrid contribution 0.052 -0.096 -0.864 0.871 sum 10.702 21.394 0.123 23.922 Atomic orbital electron populations 1.20914 0.90717 1.03331 1.02892 1.19983 0.96470 0.92677 0.97983 1.21323 0.94768 0.97738 1.00846 1.21554 0.94329 0.99062 0.97508 1.21427 1.01152 0.92044 1.00473 1.21287 0.93117 0.99419 0.98288 1.19623 0.94080 0.93106 1.05589 1.20357 0.98903 0.94272 0.81087 1.44788 1.51832 1.19498 1.12691 1.21710 0.82237 0.86680 0.88332 1.93754 1.77978 1.52825 1.36604 1.41591 1.54679 1.17717 1.06324 1.16824 1.01548 0.82935 1.10088 1.20520 0.99090 0.91696 0.95272 1.20760 0.98746 0.96474 1.05120 1.18051 0.90061 0.93415 0.89899 1.19868 1.30116 0.96761 1.04936 0.89784 1.26902 0.92448 1.05587 0.93687 1.69976 1.34416 1.35853 1.04110 0.85213 0.80053 0.75350 0.78865 1.18129 1.19690 1.17978 1.20719 1.03527 0.92227 1.09347 1.20320 0.93048 0.97865 0.98339 0.90597 0.92359 0.89950 0.84009 0.83542 0.83972 0.85410 0.90429 0.89953 0.74838 0.74264 0.88043 0.88777 0.90222 0.87279 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.60 71.24 0.68 -1.11 16 2 C -0.07 -1.09 5.88 -19.87 -0.12 -1.21 16 3 C -0.13 -1.60 9.70 22.26 0.22 -1.38 16 4 C -0.11 -1.18 10.05 22.27 0.22 -0.96 16 5 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 6 C -0.10 -1.62 9.67 22.27 0.22 -1.40 16 7 C -0.12 -2.16 5.25 -19.86 -0.10 -2.27 16 8 C 0.18 4.00 4.65 85.63 0.40 4.40 16 9 N -0.66 -14.80 5.55 -353.90 -1.97 -16.77 16 10 C 0.57 18.92 7.73 179.06 1.38 20.30 16 11 S -0.74 -34.24 24.96 -56.49 -1.41 -35.65 16 12 N -0.58 -18.32 5.29 -189.61 -1.00 -19.32 16 13 C -0.02 -0.86 5.94 38.60 0.23 -0.63 16 14 C -0.04 -2.22 7.76 22.14 0.17 -2.05 16 15 C -0.19 -10.65 8.63 22.48 0.19 -10.46 16 16 C 0.09 4.87 5.57 -21.27 -0.12 4.75 16 17 C -0.49 -26.51 9.04 23.38 0.21 -26.30 16 18 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 19 C 0.03 1.53 5.15 85.23 0.44 1.97 16 20 N -0.82 -45.67 10.94 21.82 0.24 -45.43 16 21 Si 0.98 39.09 29.59 68.60 2.03 41.12 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 23 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 C -0.24 -11.37 9.74 22.48 0.22 -11.16 16 26 C -0.08 -3.12 9.90 22.14 0.22 -2.90 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.08 6.13 -2.39 -0.01 1.07 16 29 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 30 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.13 1.90 8.04 -2.91 -0.02 1.88 16 34 H 0.08 2.02 7.85 -2.38 -0.02 2.00 16 35 H 0.08 2.14 6.25 -2.38 -0.01 2.13 16 36 H 0.41 6.47 8.48 -92.71 -0.79 5.68 16 37 H 0.42 9.03 8.84 -92.71 -0.82 8.21 16 38 H 0.10 5.26 6.16 -6.36 -0.04 5.22 16 39 H 0.09 5.65 6.17 -2.91 -0.02 5.64 16 40 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -73.61 362.60 2.02 -71.59 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.56 Total: 36.29 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.69 Total: -31.83 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.73 Total: -81.52 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: -34.24 SS G_CDS: -1.41 Total: -35.65 kcal Total: -73.61 2.02 -71.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225308778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.312 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds