Wall clock time and date at job start Fri Apr 10 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 119.99994 * 2 1 4 4 C 1.38215 * 119.99604 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00128 * 0.27506 * 4 3 2 6 6 C 1.38214 * 120.00164 * 359.51499 * 5 4 3 7 7 C 1.50700 * 120.00187 * 180.25691 * 6 5 4 8 8 N 1.46509 * 109.46674 * 270.20685 * 7 6 5 9 9 C 1.34775 * 119.99835 * 179.97438 * 8 7 6 10 10 S 1.71204 * 119.99961 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.39140 * 119.99860 * 174.26089 * 11 9 8 13 13 C 1.39516 * 119.83561 * 319.00341 * 12 11 9 14 14 C 1.36356 * 120.16125 * 179.76214 * 13 12 11 15 15 C 1.40875 * 119.83643 * 0.51593 * 14 13 12 16 16 C 1.41135 * 120.16530 * 179.71950 * 15 14 13 17 17 H 1.08004 * 120.00423 * 205.26882 * 16 15 14 18 18 C 1.39892 * 119.99931 * 25.26581 * 16 15 14 19 19 N 1.30880 * 119.99984 * 16.92414 * 18 16 15 20 20 Si 1.86799 * 119.99866 * 196.91951 * 18 16 15 21 21 H 1.48492 * 109.47317 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46928 * 120.00480 * 20 18 16 23 23 H 1.48498 * 109.47192 * 239.99814 * 20 18 16 24 24 C 1.40882 * 119.67676 * 359.73581 * 15 14 13 25 25 C 1.36363 * 119.82868 * 0.02562 * 24 15 14 26 26 C 1.38211 * 119.99527 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.47063 * 90.00014 * 1 2 3 28 28 H 1.09001 * 109.47652 * 209.99918 * 1 2 3 29 29 H 1.09001 * 109.47427 * 330.00249 * 1 2 3 30 30 H 1.08000 * 120.00169 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99647 * 180.02562 * 4 3 2 32 32 H 1.08005 * 120.00101 * 179.72620 * 5 4 3 33 33 H 1.09001 * 109.47470 * 30.20777 * 7 6 5 34 34 H 1.09003 * 109.47372 * 150.21171 * 7 6 5 35 35 H 0.96995 * 119.99771 * 0.02562 * 8 7 6 36 36 H 0.96997 * 119.99805 * 354.25226 * 11 9 8 37 37 H 1.07994 * 119.91392 * 0.02562 * 13 12 11 38 38 H 1.08004 * 120.08075 * 180.25337 * 14 13 12 39 39 H 0.96999 * 120.00523 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.08497 * 179.97438 * 24 15 14 41 41 H 1.07993 * 119.91666 * 179.97438 * 25 24 15 42 42 H 1.08003 * 120.00448 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 -0.0047 6 6 3.5806 -1.1970 -0.0003 7 6 4.3341 -2.5022 -0.0001 8 7 4.5783 -2.9251 -1.3814 9 6 5.2412 -4.0724 -1.6276 10 16 5.7974 -5.0359 -0.3262 11 7 5.4663 -4.4613 -2.8982 12 6 6.2523 -5.5806 -3.1544 13 6 7.4126 -5.7988 -2.4110 14 6 8.1851 -6.8960 -2.6532 15 6 7.8149 -7.8046 -3.6641 16 6 8.6126 -8.9394 -3.9246 17 1 8.5944 -9.3997 -4.9015 18 6 9.4269 -9.4680 -2.9174 19 7 9.2175 -9.1411 -1.6675 20 14 10.8131 -10.6407 -3.3565 21 1 10.8396 -10.8474 -4.8267 22 1 12.1081 -10.0636 -2.9147 23 1 10.5940 -11.9427 -2.6769 24 6 6.6447 -7.5748 -4.4141 25 6 5.8794 -6.4757 -4.1574 26 6 2.1980 -1.1970 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3517 -0.0001 -0.0087 33 1 5.2865 -2.3719 0.5138 34 1 3.7449 -3.2618 0.5137 35 1 4.2635 -2.3791 -2.1186 36 1 5.0804 -3.9610 -3.6341 37 1 7.6972 -5.0992 -1.6392 38 1 9.0809 -7.0658 -2.0742 39 1 9.7823 -9.5074 -0.9692 40 1 6.3549 -8.2668 -5.1909 41 1 4.9823 -6.2979 -4.7317 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225426479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:53 Heat of formation + Delta-G solvation = 61.211230 kcal Electronic energy + Delta-G solvation = -23190.365583 eV Core-core repulsion = 19839.823957 eV Total energy + Delta-G solvation = -3350.541625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.97727 -38.96131 -37.24895 -35.21956 -33.45701 -32.86411 -31.58927 -29.51823 -29.03528 -27.37195 -26.51220 -24.71545 -23.43768 -22.44872 -21.26579 -21.11369 -20.40501 -18.05846 -17.38604 -17.32141 -16.66283 -15.94155 -15.41288 -15.17735 -15.07798 -14.64585 -14.43052 -14.06618 -13.92603 -13.52197 -13.34109 -13.14047 -12.74481 -12.62132 -12.32484 -12.15005 -12.07541 -11.77535 -11.41831 -11.34416 -11.20490 -11.08643 -10.83810 -10.55372 -10.44594 -9.86210 -9.63314 -9.33939 -9.23062 -8.99844 -8.83852 -7.66720 -7.36375 -6.99910 -6.77670 -6.24096 -4.31432 0.88318 1.04104 1.75430 2.51168 2.82649 3.06214 3.09177 3.13821 3.16618 3.26837 3.52541 3.93256 4.04527 4.32943 4.45905 4.56204 4.63992 4.79631 4.96848 5.08625 5.19543 5.23256 5.39624 5.48283 5.58832 5.71317 5.77918 5.81078 6.09426 6.10647 6.21812 6.28733 6.28964 6.39254 6.59737 6.65324 7.00358 7.05399 7.13738 7.24278 7.32357 7.62429 7.69161 7.96081 8.07529 8.21953 8.29251 8.65655 8.88069 8.98676 10.17627 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.032252 B = 0.002190 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.953988 B =12782.005813 C =13095.783732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.114 4.114 4 C -0.119 4.119 5 C -0.104 4.104 6 C -0.105 4.105 7 C 0.173 3.827 8 N -0.696 5.696 9 C 0.541 3.459 10 S -0.636 6.636 11 N -0.591 5.591 12 C -0.038 4.038 13 C -0.038 4.038 14 C -0.164 4.164 15 C 0.119 3.881 16 C -0.452 4.452 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.774 5.774 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.226 4.226 25 C -0.081 4.081 26 C -0.099 4.099 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.391 0.609 36 H 0.389 0.611 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.283 0.717 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 19.072 1.138 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.123 4.123 6 C -0.105 4.105 7 C 0.049 3.951 8 N -0.329 5.329 9 C 0.182 3.818 10 S -0.507 6.507 11 N -0.210 5.210 12 C -0.130 4.130 13 C -0.060 4.060 14 C -0.185 4.185 15 C 0.116 3.884 16 C -0.481 4.481 17 H 0.098 0.902 18 C -0.147 4.147 19 N -0.398 5.398 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.247 4.247 25 C -0.102 4.102 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.226 0.774 36 H 0.225 0.775 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.688 18.323 2.383 21.864 hybrid contribution -0.153 0.432 -1.357 1.432 sum -11.841 18.754 1.026 22.203 Atomic orbital electron populations 1.20807 0.91033 1.02941 1.02427 1.19946 0.96226 0.93058 0.99800 1.21100 0.94327 0.97548 1.00288 1.21157 0.94283 0.98062 1.00199 1.21159 1.00220 0.91833 0.99074 1.19977 0.93822 0.94704 1.02038 1.20404 1.00971 0.92216 0.81461 1.44865 1.57393 1.21143 1.09450 1.22417 0.83051 0.85798 0.90489 1.93425 1.68882 1.56577 1.31851 1.41980 1.47331 1.28224 1.03499 1.16899 0.96270 0.92557 1.07306 1.20514 0.91707 0.98277 0.95487 1.20874 1.01418 0.94026 1.02187 1.17724 0.89446 0.91422 0.89825 1.19645 1.19958 1.10147 0.98322 0.90238 1.25992 0.97472 0.96866 0.94386 1.69893 1.33385 1.36111 1.00391 0.86261 0.80672 0.79756 0.80066 1.18378 1.19623 1.19926 1.20469 0.98202 0.99473 1.06520 1.19986 0.98046 0.94363 0.97809 1.21050 0.93434 0.97913 0.99402 0.91129 0.91342 0.91501 0.86062 0.85838 0.85676 0.89027 0.89097 0.77390 0.77537 0.87134 0.86190 0.90612 0.88640 0.89563 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.09 -0.72 5.88 -104.62 -0.62 -1.33 16 3 C -0.11 -0.86 9.70 -39.58 -0.38 -1.24 16 4 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 5 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 6 C -0.10 -1.00 5.25 -104.62 -0.55 -1.55 16 7 C 0.17 2.02 5.25 -5.19 -0.03 1.99 16 8 N -0.70 -8.63 5.55 -63.21 -0.35 -8.98 16 9 C 0.54 9.37 7.73 -86.92 -0.67 8.70 16 10 S -0.64 -14.42 24.96 -107.50 -2.68 -17.10 16 11 N -0.59 -10.15 5.29 -11.28 -0.06 -10.21 16 12 C -0.04 -0.82 5.94 -83.59 -0.50 -1.32 16 13 C -0.04 -0.94 7.76 -39.78 -0.31 -1.25 16 14 C -0.16 -4.38 8.63 -39.26 -0.34 -4.72 16 15 C 0.12 3.16 5.57 -106.80 -0.59 2.57 16 16 C -0.45 -11.88 9.04 -37.86 -0.34 -12.22 16 17 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 18 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 19 N -0.77 -20.49 10.94 55.54 0.61 -19.88 16 20 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.23 -5.46 9.74 -39.26 -0.38 -5.84 16 25 C -0.08 -1.78 9.90 -39.78 -0.39 -2.17 16 26 C -0.10 -0.89 9.36 -39.58 -0.37 -1.26 16 27 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 34 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 35 H 0.39 3.76 8.48 -40.82 -0.35 3.42 16 36 H 0.39 5.09 8.84 -40.82 -0.36 4.73 16 37 H 0.11 2.75 6.16 -47.14 -0.29 2.45 16 38 H 0.12 3.34 6.17 -52.48 -0.32 3.02 16 39 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 40 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -31.80 366.72 -13.47 -45.27 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.49 Total: 12.63 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -5.99 Total: -20.82 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.20 Total: -39.07 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -14.42 SS G_CDS: -2.68 Total: -17.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.80 -13.47 -45.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225426479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.482 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds