Wall clock time and date at job start Fri Apr 10 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 119.99994 * 2 1 4 4 C 1.38215 * 119.99604 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00128 * 0.27506 * 4 3 2 6 6 C 1.38214 * 120.00164 * 359.51499 * 5 4 3 7 7 C 1.50700 * 120.00187 * 180.25691 * 6 5 4 8 8 N 1.46509 * 109.46674 * 270.20685 * 7 6 5 9 9 C 1.34775 * 119.99835 * 179.97438 * 8 7 6 10 10 S 1.71204 * 119.99961 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.39140 * 119.99860 * 174.26089 * 11 9 8 13 13 C 1.39516 * 119.83561 * 319.00341 * 12 11 9 14 14 C 1.36356 * 120.16125 * 179.76214 * 13 12 11 15 15 C 1.40875 * 119.83643 * 0.51593 * 14 13 12 16 16 C 1.41135 * 120.16530 * 179.71950 * 15 14 13 17 17 H 1.08004 * 120.00423 * 205.26882 * 16 15 14 18 18 C 1.39892 * 119.99931 * 25.26581 * 16 15 14 19 19 N 1.30880 * 119.99984 * 16.92414 * 18 16 15 20 20 Si 1.86799 * 119.99866 * 196.91951 * 18 16 15 21 21 H 1.48492 * 109.47317 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46928 * 120.00480 * 20 18 16 23 23 H 1.48498 * 109.47192 * 239.99814 * 20 18 16 24 24 C 1.40882 * 119.67676 * 359.73581 * 15 14 13 25 25 C 1.36363 * 119.82868 * 0.02562 * 24 15 14 26 26 C 1.38211 * 119.99527 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.47063 * 90.00014 * 1 2 3 28 28 H 1.09001 * 109.47652 * 209.99918 * 1 2 3 29 29 H 1.09001 * 109.47427 * 330.00249 * 1 2 3 30 30 H 1.08000 * 120.00169 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99647 * 180.02562 * 4 3 2 32 32 H 1.08005 * 120.00101 * 179.72620 * 5 4 3 33 33 H 1.09001 * 109.47470 * 30.20777 * 7 6 5 34 34 H 1.09003 * 109.47372 * 150.21171 * 7 6 5 35 35 H 0.96995 * 119.99771 * 0.02562 * 8 7 6 36 36 H 0.96997 * 119.99805 * 354.25226 * 11 9 8 37 37 H 1.07994 * 119.91392 * 0.02562 * 13 12 11 38 38 H 1.08004 * 120.08075 * 180.25337 * 14 13 12 39 39 H 0.96999 * 120.00523 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.08497 * 179.97438 * 24 15 14 41 41 H 1.07993 * 119.91666 * 179.97438 * 25 24 15 42 42 H 1.08003 * 120.00448 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 -0.0047 6 6 3.5806 -1.1970 -0.0003 7 6 4.3341 -2.5022 -0.0001 8 7 4.5783 -2.9251 -1.3814 9 6 5.2412 -4.0724 -1.6276 10 16 5.7974 -5.0359 -0.3262 11 7 5.4663 -4.4613 -2.8982 12 6 6.2523 -5.5806 -3.1544 13 6 7.4126 -5.7988 -2.4110 14 6 8.1851 -6.8960 -2.6532 15 6 7.8149 -7.8046 -3.6641 16 6 8.6126 -8.9394 -3.9246 17 1 8.5944 -9.3997 -4.9015 18 6 9.4269 -9.4680 -2.9174 19 7 9.2175 -9.1411 -1.6675 20 14 10.8131 -10.6407 -3.3565 21 1 10.8396 -10.8474 -4.8267 22 1 12.1081 -10.0636 -2.9147 23 1 10.5940 -11.9427 -2.6769 24 6 6.6447 -7.5748 -4.4141 25 6 5.8794 -6.4757 -4.1574 26 6 2.1980 -1.1970 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3517 -0.0001 -0.0087 33 1 5.2865 -2.3719 0.5138 34 1 3.7449 -3.2618 0.5137 35 1 4.2635 -2.3791 -2.1186 36 1 5.0804 -3.9610 -3.6341 37 1 7.6972 -5.0992 -1.6392 38 1 9.0809 -7.0658 -2.0742 39 1 9.7823 -9.5074 -0.9692 40 1 6.3549 -8.2668 -5.1909 41 1 4.9823 -6.2979 -4.7317 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225426479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:53 Heat of formation + Delta-G solvation = 44.846940 kcal Electronic energy + Delta-G solvation = -23191.075192 eV Core-core repulsion = 19839.823957 eV Total energy + Delta-G solvation = -3351.251234 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92616 -40.33400 -38.80289 -36.68319 -35.05764 -33.70334 -32.47473 -31.41937 -30.77500 -28.07867 -27.57150 -26.33931 -24.97207 -23.14711 -22.97687 -22.49735 -21.63540 -19.50166 -19.21195 -18.85333 -17.39227 -17.15180 -16.75699 -16.71339 -16.24520 -15.81411 -15.68162 -15.47272 -14.95096 -14.60305 -14.49731 -14.12678 -13.94116 -13.85039 -13.78678 -13.56305 -13.13001 -12.91333 -12.87582 -12.75710 -12.54771 -12.31300 -12.15505 -12.00953 -11.92715 -11.64381 -11.44936 -11.12717 -10.42595 -9.89583 -9.62187 -9.53957 -9.14090 -8.82113 -8.64275 -8.07690 -6.27900 0.15897 0.21806 0.41689 0.96057 1.11436 1.26172 1.40096 1.53574 1.56577 1.73171 2.21971 2.63428 2.76814 2.89629 3.52889 3.77757 3.82865 4.00874 4.20744 4.31045 4.41043 4.43815 4.53021 4.55426 4.62642 4.79235 4.81296 4.83110 4.95243 5.06218 5.09264 5.13979 5.17965 5.28141 5.36506 5.44591 5.50342 5.57824 5.63920 5.73789 5.80187 6.00838 6.03742 6.13967 6.21032 6.37885 6.58362 6.72589 6.94281 7.06332 8.33705 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.032252 B = 0.002190 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.953988 B =12782.005813 C =13095.783732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.112 4.112 7 C 0.177 3.823 8 N -0.659 5.659 9 C 0.572 3.428 10 S -0.739 6.739 11 N -0.581 5.581 12 C -0.021 4.021 13 C -0.044 4.044 14 C -0.190 4.190 15 C 0.088 3.912 16 C -0.487 4.487 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.818 5.818 20 Si 0.985 3.015 21 H -0.251 1.251 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.237 4.237 25 C -0.076 4.076 26 C -0.108 4.108 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.413 0.587 36 H 0.418 0.582 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.287 0.713 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.224 21.444 -0.441 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.131 4.131 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.290 5.290 9 C 0.209 3.791 10 S -0.612 6.612 11 N -0.203 5.203 12 C -0.115 4.115 13 C -0.066 4.066 14 C -0.211 4.211 15 C 0.085 3.915 16 C -0.515 4.515 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.444 5.444 20 Si 0.806 3.194 21 H -0.175 1.175 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.258 4.258 25 C -0.096 4.096 26 C -0.127 4.127 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.258 0.742 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.801 20.777 0.771 24.955 hybrid contribution 0.250 0.009 -0.834 0.870 sum -13.551 20.785 -0.063 24.813 Atomic orbital electron populations 1.20850 0.89573 1.03633 1.03115 1.20222 0.97408 0.92805 0.99121 1.21441 0.94421 0.98360 0.98960 1.21429 0.94664 0.98405 0.99353 1.21270 1.00538 0.92030 0.99290 1.19716 0.93968 0.93549 1.04091 1.20387 1.00594 0.93315 0.80276 1.44823 1.54273 1.18906 1.11025 1.21723 0.82346 0.85997 0.89013 1.93751 1.72586 1.59749 1.35099 1.41595 1.47006 1.27474 1.04190 1.16836 0.95320 0.93359 1.05945 1.20524 0.92801 0.97676 0.95592 1.20756 1.01581 0.95558 1.03156 1.18061 0.90893 0.91903 0.90616 1.19914 1.21751 1.10925 0.98952 0.89799 1.26912 0.99522 0.98412 0.93836 1.69984 1.34817 1.37963 1.01587 0.85113 0.76991 0.77272 0.80054 1.17457 1.19118 1.19280 1.20723 0.97705 1.00723 1.06616 1.20325 0.98812 0.92978 0.97503 1.21138 0.93168 0.98639 0.99754 0.90352 0.91324 0.90230 0.83788 0.83806 0.85428 0.90156 0.90219 0.74726 0.74227 0.88018 0.88763 0.90224 0.87259 0.85187 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.10 -1.26 5.88 -19.87 -0.12 -1.38 16 3 C -0.11 -1.33 9.70 22.27 0.22 -1.11 16 4 C -0.12 -1.51 10.05 22.27 0.22 -1.28 16 5 C -0.11 -1.74 9.70 22.27 0.22 -1.53 16 6 C -0.11 -1.95 5.25 -19.86 -0.10 -2.06 16 7 C 0.18 3.99 5.25 85.63 0.45 4.44 16 8 N -0.66 -14.96 5.55 -353.88 -1.97 -16.93 16 9 C 0.57 19.07 7.73 179.06 1.38 20.46 16 10 S -0.74 -34.48 24.96 -56.49 -1.41 -35.89 16 11 N -0.58 -18.46 5.29 -189.60 -1.00 -19.46 16 12 C -0.02 -0.89 5.94 38.60 0.23 -0.66 16 13 C -0.04 -2.24 7.76 22.14 0.17 -2.06 16 14 C -0.19 -10.64 8.63 22.48 0.19 -10.44 16 15 C 0.09 4.85 5.57 -21.28 -0.12 4.73 16 16 C -0.49 -26.48 9.04 23.38 0.21 -26.26 16 17 H 0.08 4.30 7.90 -2.91 -0.02 4.28 16 18 C 0.03 1.50 5.15 85.24 0.44 1.94 16 19 N -0.82 -45.67 10.94 21.82 0.24 -45.43 16 20 Si 0.99 39.14 29.59 68.60 2.03 41.17 16 21 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 C -0.24 -11.38 9.74 22.48 0.22 -11.16 16 25 C -0.08 -3.15 9.90 22.14 0.22 -2.93 16 26 C -0.11 -1.72 9.36 22.27 0.21 -1.51 16 27 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 29 H 0.08 0.51 8.09 -2.39 -0.02 0.49 16 30 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 31 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.08 2.07 7.94 -2.39 -0.02 2.05 16 34 H 0.08 2.06 7.94 -2.39 -0.02 2.04 16 35 H 0.41 6.46 8.48 -92.71 -0.79 5.67 16 36 H 0.42 9.12 8.84 -92.71 -0.82 8.30 16 37 H 0.10 5.28 6.16 -6.32 -0.04 5.24 16 38 H 0.09 5.67 6.17 -2.91 -0.02 5.65 16 39 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 40 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 41 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.05 366.72 2.07 -71.97 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.57 Total: 35.69 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 4.76 Total: -31.13 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.73 Total: -81.82 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: -34.48 SS G_CDS: -1.41 Total: -35.89 kcal Total: -74.05 2.07 -71.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225426479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.818 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds