Wall clock time and date at job start Fri Apr 10 2020 18:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46898 * 110.99895 * 2 1 4 4 C 1.53237 * 109.33652 * 187.25450 * 3 2 1 5 5 N 1.47081 * 108.51996 * 306.16405 * 4 3 2 6 6 S 1.65602 * 120.88186 * 231.18640 * 5 4 3 7 7 O 1.42096 * 106.40145 * 336.46375 * 6 5 4 8 8 O 1.42103 * 106.39879 * 203.53881 * 6 5 4 9 9 C 1.76195 * 107.21669 * 90.00372 * 6 5 4 10 10 C 1.38302 * 119.93448 * 89.99760 * 9 6 5 11 11 C 1.38094 * 120.07461 * 180.02562 * 10 9 6 12 12 C 1.38878 * 119.92859 * 0.27306 * 11 10 9 13 13 O 1.35748 * 120.07147 * 179.72501 * 12 11 10 14 14 C 1.34830 * 117.00101 * 354.46447 * 13 12 11 15 15 H 1.07999 * 119.99626 * 5.05831 * 14 13 12 16 16 C 1.38650 * 120.00326 * 185.05731 * 14 13 12 17 17 N 1.31558 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47421 * 89.99979 * 18 16 14 20 20 H 1.48502 * 109.47010 * 209.99858 * 18 16 14 21 21 H 1.48498 * 109.47443 * 330.00127 * 18 16 14 22 22 C 1.38878 * 119.86104 * 359.43134 * 12 11 10 23 23 C 1.38104 * 119.93044 * 0.56838 * 22 12 11 24 24 C 1.47077 * 118.23449 * 51.46206 * 5 4 3 25 25 C 1.46895 * 110.99617 * 124.29925 * 2 1 3 26 26 H 1.09004 * 109.46767 * 60.00098 * 1 2 3 27 27 H 1.08988 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47214 * 300.00516 * 1 2 3 29 29 H 1.08999 * 109.49935 * 67.29022 * 3 2 1 30 30 H 1.09000 * 109.51427 * 307.22032 * 3 2 1 31 31 H 1.09005 * 109.63071 * 186.45947 * 4 3 2 32 32 H 1.08999 * 109.63203 * 65.87681 * 4 3 2 33 33 H 1.08003 * 119.96310 * 359.97438 * 10 9 6 34 34 H 1.08000 * 120.04048 * 180.02562 * 11 10 9 35 35 H 0.97006 * 120.00005 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.03586 * 180.29774 * 22 12 11 37 37 H 1.07996 * 119.96436 * 179.74178 * 23 22 12 38 38 H 1.08999 * 109.62913 * 68.25033 * 24 5 4 39 39 H 1.08999 * 109.63016 * 188.82968 * 24 5 4 40 40 H 1.09001 * 109.49474 * 292.70070 * 25 2 1 41 41 H 1.08996 * 109.49927 * 52.75564 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5164 1.3311 -0.1826 5 7 4.0869 0.4460 0.8443 6 16 5.3385 0.9526 1.8030 7 8 5.9982 1.9881 1.0877 8 8 5.9982 -0.2219 2.2554 9 6 4.6306 1.7064 3.2296 10 6 4.3533 0.9420 4.3483 11 6 3.7979 1.5297 5.4678 12 6 3.5127 2.8888 5.4675 13 8 2.9616 3.4685 6.5643 14 6 2.6100 2.6510 7.5772 15 1 2.8449 1.5980 7.5277 16 6 1.9469 3.1621 8.6824 17 7 1.6612 4.4448 8.7431 18 14 1.4604 2.0295 10.0860 19 1 2.5606 1.9747 11.0820 20 1 0.2297 2.5473 10.7360 21 1 1.2042 0.6662 9.5561 22 6 3.7980 3.6550 4.3448 23 6 4.3533 3.0614 3.2284 24 6 3.5204 -0.9031 0.9928 25 6 1.9954 -0.7728 1.1329 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0275 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.7555 1.8532 0.9478 30 1 1.5458 1.9340 -0.8181 31 1 3.9256 2.3350 -0.0690 32 1 3.7562 0.9449 -1.1732 33 1 4.5705 -0.1160 4.3461 34 1 3.5820 0.9323 6.3412 35 1 1.1976 4.8025 9.5165 36 1 3.5817 4.7132 4.3433 37 1 4.5716 3.6558 2.3536 38 1 3.7606 -1.5000 0.1129 39 1 3.9321 -1.3771 1.8837 40 1 1.7555 -0.2612 2.0650 41 1 1.5452 -1.7655 1.1367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226104889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:56 Heat of formation + Delta-G solvation = -60.670528 kcal Electronic energy + Delta-G solvation = -26145.298319 eV Core-core repulsion = 22346.329490 eV Total energy + Delta-G solvation = -3798.968829 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.26319 -38.96167 -36.99534 -36.69102 -35.55577 -34.65427 -32.64797 -31.26939 -30.44068 -29.36164 -28.12211 -25.73709 -24.04922 -23.93920 -22.26914 -22.08744 -20.67985 -18.75283 -18.33699 -17.90938 -17.37733 -16.53630 -15.93977 -15.31947 -15.11719 -14.98366 -14.88587 -14.72794 -14.29252 -14.23017 -13.98916 -13.93429 -13.17821 -12.98980 -12.86776 -12.45801 -12.29832 -12.25088 -12.06160 -11.95014 -11.80859 -11.77812 -11.75194 -11.40274 -11.21993 -11.18053 -10.98041 -10.88405 -10.64337 -10.33664 -9.67708 -9.20253 -9.13574 -8.48070 -8.46492 -7.79485 -6.77531 -4.35426 0.71551 1.64040 2.02131 2.95605 2.96934 3.02466 3.17013 3.71964 3.74255 4.02732 4.23672 4.52856 4.61040 4.80041 4.83570 4.92615 4.99676 5.08252 5.19943 5.27714 5.36744 5.38338 5.41078 5.48274 5.51589 5.57534 5.68418 5.77921 5.91026 5.95536 5.98042 6.02759 6.36676 6.51500 6.59163 6.70711 6.77715 6.83729 6.83994 6.96776 7.12755 7.53023 7.67465 8.66534 9.29809 10.38324 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.003720 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.688607 B = 7524.368813 C = 8293.684076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.038 3.962 4 C 0.130 3.870 5 N -1.004 6.004 6 S 2.698 3.302 7 O -0.970 6.970 8 O -0.970 6.970 9 C -0.768 4.768 10 C 0.023 3.977 11 C -0.251 4.251 12 C 0.188 3.812 13 O -0.156 6.156 14 C -0.396 4.396 15 H 0.099 0.901 16 C 0.044 3.956 17 N -0.847 5.847 18 Si 0.947 3.053 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.207 4.207 23 C 0.016 3.984 24 C 0.130 3.870 25 C 0.038 3.962 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.276 0.724 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 -8.315 -14.456 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.092 4.092 4 C 0.004 3.996 5 N -0.841 5.841 6 S 2.794 3.206 7 O -0.961 6.961 8 O -0.961 6.961 9 C -0.860 4.860 10 C 0.003 3.997 11 C -0.271 4.271 12 C 0.130 3.870 13 O -0.055 6.055 14 C -0.471 4.471 15 H 0.117 0.883 16 C -0.164 4.164 17 N -0.479 5.479 18 Si 0.771 3.229 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.228 4.228 23 C -0.004 4.004 24 C 0.004 3.996 25 C -0.092 4.092 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.024 -8.223 -14.836 16.993 hybrid contribution -1.224 0.144 2.044 2.386 sum -2.248 -8.079 -12.792 15.296 Atomic orbital electron populations 1.22366 0.87118 1.02061 1.00821 1.61905 1.07695 1.13702 1.43246 1.22521 0.95529 0.89550 1.01588 1.21454 0.92344 0.94166 0.91653 1.57952 1.54856 1.22122 1.49204 1.01444 0.72906 0.73072 0.73150 1.93516 1.71703 1.58332 1.72541 1.93518 1.71711 1.48692 1.82185 1.29846 1.32047 1.05061 1.19096 1.20382 0.90221 0.98055 0.91029 1.21191 1.09902 0.95477 1.00520 1.19576 0.89125 0.91338 0.86966 1.83966 1.64344 1.36095 1.21113 1.21523 1.37897 0.92252 0.95445 0.88336 1.25441 0.95564 0.96911 0.98439 1.70035 1.35810 1.12052 1.30013 0.85610 0.78648 0.79194 0.79484 1.19454 1.19914 1.18862 1.20269 1.09607 1.00113 0.92770 1.20275 0.91072 0.92052 0.96956 1.21547 0.92322 0.82734 1.03015 1.22603 0.95501 0.98774 0.92322 0.91343 0.91377 0.95427 0.93681 0.89712 0.88879 0.90479 0.86002 0.84841 0.91383 0.85750 0.85590 0.90442 0.88892 0.93657 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.58 60.07 0.58 0.79 16 2 N -0.54 -5.51 4.88 -242.31 -1.18 -6.69 16 3 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 4 C 0.13 1.40 6.53 -3.60 -0.02 1.37 16 5 N -1.00 -12.59 3.32 -112.97 -0.38 -12.97 16 6 S 2.70 42.33 5.70 -107.50 -0.61 41.72 16 7 O -0.97 -16.93 16.05 -57.17 -0.92 -17.85 16 8 O -0.97 -17.08 16.05 -57.17 -0.92 -18.00 16 9 C -0.77 -13.45 5.98 -39.53 -0.24 -13.69 16 10 C 0.02 0.42 9.51 -39.61 -0.38 0.04 16 11 C -0.25 -5.21 9.17 -39.40 -0.36 -5.57 16 12 C 0.19 4.32 6.65 -39.11 -0.26 4.06 16 13 O -0.16 -4.17 9.76 0.05 0.00 -4.17 16 14 C -0.40 -10.34 9.49 30.88 0.29 -10.05 16 15 H 0.10 2.36 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 17 N -0.85 -23.26 13.67 55.48 0.76 -22.50 16 18 Si 0.95 19.09 29.55 -169.99 -5.02 14.07 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.21 -4.21 9.99 -39.39 -0.39 -4.60 16 23 C 0.02 0.29 9.51 -39.61 -0.38 -0.08 16 24 C 0.13 1.41 6.56 -3.37 -0.02 1.39 16 25 C 0.04 0.39 5.64 -3.47 -0.02 0.37 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.52 8.08 -51.94 -0.42 0.10 16 28 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 31 H 0.09 0.98 7.22 -51.93 -0.37 0.60 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 1.94 7.61 -52.48 -0.40 1.54 16 34 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 35 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 37 H 0.13 1.92 7.61 -52.49 -0.40 1.52 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.00 7.21 -51.93 -0.37 0.62 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -31.77 349.98 -9.78 -41.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.47 Total: 4.15 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -1.32 Total: -24.58 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.80 Total: -42.16 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.83 Total: -40.02 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 42.33 SS G_CDS: -0.61 Total: 41.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.77 -9.78 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226104889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.117 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds