Wall clock time and date at job start Fri Apr 10 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 119.99757 * 2 1 4 4 N 1.34770 * 120.00080 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00439 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.47763 * 180.02562 * 5 4 2 7 7 C 1.38235 * 119.99854 * 89.99821 * 6 5 4 8 8 C 1.38232 * 119.99898 * 179.97438 * 7 6 5 9 9 C 1.38232 * 120.00145 * 0.02562 * 8 7 6 10 10 S 1.76197 * 119.99908 * 179.97438 * 9 8 7 11 11 O 1.42100 * 106.40432 * 336.46552 * 10 9 8 12 12 O 1.42100 * 106.40250 * 203.54025 * 10 9 8 13 13 N 1.65606 * 107.21394 * 90.00373 * 10 9 8 14 14 C 1.46497 * 120.00213 * 64.99953 * 13 10 9 15 15 H 1.09003 * 109.46733 * 335.00276 * 14 13 10 16 16 C 1.53000 * 109.47145 * 94.99840 * 14 13 10 17 17 C 1.50694 * 109.47115 * 214.99914 * 14 13 10 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.38230 * 120.00029 * 0.25703 * 9 8 7 26 26 C 1.38234 * 120.00290 * 269.98807 * 6 5 4 27 27 H 1.08998 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46949 * 300.00080 * 1 2 3 29 29 H 1.09001 * 109.47321 * 59.99554 * 1 2 3 30 30 H 0.97007 * 119.99885 * 0.02562 * 4 2 1 31 31 H 1.09001 * 109.46535 * 59.99867 * 5 4 2 32 32 H 1.08996 * 109.47305 * 300.01021 * 5 4 2 33 33 H 1.08001 * 119.99996 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.99974 * 180.02562 * 8 7 6 35 35 H 0.97006 * 119.99827 * 244.99362 * 13 10 9 36 36 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 37 37 H 1.09007 * 109.47356 * 300.00099 * 16 14 13 38 38 H 1.09000 * 109.47156 * 59.99824 * 16 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.00112 * 179.73046 * 25 9 8 41 41 H 1.08000 * 119.99752 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1483 -2.5880 0.0001 7 6 4.3782 -3.2399 -1.1970 8 6 4.8395 -4.5429 -1.1969 9 6 5.0705 -5.1943 0.0002 10 16 5.6579 -6.8555 0.0003 11 8 5.2779 -7.4155 -1.2492 12 8 5.2789 -7.4151 1.2503 13 7 7.3126 -6.7902 -0.0003 14 6 8.0239 -6.2254 1.1491 15 1 7.3710 -5.5271 1.6729 16 6 8.4329 -7.3522 2.0998 17 6 9.2551 -5.4999 0.6710 18 1 9.4852 -5.4635 -0.3836 19 6 10.0886 -4.8833 1.5800 20 7 9.8088 -4.9280 2.8643 21 14 11.6152 -3.9847 0.9873 22 1 12.3361 -3.4120 2.1525 23 1 12.5041 -4.9363 0.2736 24 1 11.2187 -2.8907 0.0647 25 6 4.8350 -4.5445 1.1973 26 6 4.3794 -3.2393 1.1972 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6958 -2.0072 0.0005 31 1 4.0095 -0.6528 0.8895 32 1 4.0089 -0.6539 -0.8904 33 1 4.1974 -2.7311 -2.1324 34 1 5.0196 -5.0521 -2.1322 35 1 7.8110 -7.1260 -0.7618 36 1 8.9617 -6.9320 2.9552 37 1 7.5423 -7.8770 2.4457 38 1 9.0856 -8.0506 1.5760 39 1 10.3954 -4.4946 3.5038 40 1 5.0113 -5.0548 2.1326 41 1 4.2003 -2.7298 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263720272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:58 Heat of formation + Delta-G solvation = -119.722656 kcal Electronic energy + Delta-G solvation = -25332.307305 eV Core-core repulsion = 21530.777783 eV Total energy + Delta-G solvation = -3801.529522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96361 -40.05725 -38.31070 -37.24113 -36.89654 -36.11470 -34.11057 -32.99503 -32.11436 -30.60384 -30.11834 -27.22655 -27.07999 -23.97098 -22.95810 -22.81104 -21.69437 -20.51822 -19.24673 -18.78497 -18.04034 -17.85700 -17.31329 -17.25647 -16.88096 -16.36263 -16.05505 -15.89669 -15.42298 -15.24613 -14.63195 -14.59477 -14.47570 -14.04436 -13.99774 -13.97122 -13.50071 -13.34712 -13.24670 -13.11564 -13.04664 -12.98602 -12.93203 -12.80598 -12.40689 -12.25051 -12.21499 -12.01090 -11.84326 -11.16122 -11.08968 -10.58523 -10.32275 -10.22783 -10.10058 -10.04325 -8.13060 -6.27049 -0.56517 -0.28389 0.27281 1.46507 1.47333 1.54250 1.60868 1.99696 2.25290 2.46108 2.59467 2.86334 3.17035 3.37404 3.45505 3.71793 3.89337 3.96297 4.19894 4.28230 4.47158 4.52246 4.53169 4.58284 4.67808 4.71148 4.91571 4.93717 5.04090 5.07297 5.07963 5.11628 5.17672 5.31423 5.33646 5.59995 5.75430 5.78136 6.03803 6.10059 6.42198 6.50991 6.83533 7.19953 7.42643 8.91793 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.003676 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.829388 B = 7616.113875 C = 9159.655300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.715 5.715 5 C 0.159 3.841 6 C -0.052 4.052 7 C -0.118 4.118 8 C -0.029 4.029 9 C -0.670 4.670 10 S 2.703 3.297 11 O -0.989 6.989 12 O -0.990 6.990 13 N -1.100 6.100 14 C 0.280 3.720 15 H 0.028 0.972 16 C -0.154 4.154 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.021 3.979 20 N -0.912 5.912 21 Si 0.957 3.043 22 H -0.287 1.287 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.033 4.033 26 C -0.122 4.122 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.417 0.583 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.417 0.583 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.133 0.867 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 5.484 -6.584 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.483 6.483 4 N -0.368 5.368 5 C 0.035 3.965 6 C -0.053 4.053 7 C -0.137 4.137 8 C -0.048 4.048 9 C -0.759 4.759 10 S 2.795 3.205 11 O -0.979 6.979 12 O -0.980 6.980 13 N -0.861 5.861 14 C 0.174 3.826 15 H 0.046 0.954 16 C -0.214 4.214 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.783 3.217 22 H -0.212 1.212 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.052 4.052 26 C -0.141 4.141 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.254 0.746 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.252 0.748 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.330 5.582 -6.238 18.350 hybrid contribution 1.307 0.486 -0.132 1.400 sum -15.023 6.068 -6.370 17.410 Atomic orbital electron populations 1.21878 0.87891 1.06378 1.06070 1.21637 0.92330 0.82509 0.74032 1.90723 1.72114 1.33220 1.52253 1.46137 1.06232 1.09636 1.74815 1.20176 0.81108 0.91585 1.03629 1.20186 0.96448 0.95145 0.93473 1.21456 0.99277 0.94055 0.98963 1.21150 0.92281 0.94992 0.96416 1.30837 1.18154 1.26364 1.00527 1.01212 0.72520 0.74271 0.72459 1.93504 1.82614 1.77516 1.44294 1.93526 1.82760 1.76498 1.45258 1.55378 1.23860 1.77560 1.29264 1.18255 0.91791 0.90640 0.81885 0.95442 1.22163 0.99446 0.98352 1.01406 1.21577 1.08409 1.33849 0.94075 0.91395 1.25620 1.00530 0.96849 0.94952 1.69979 1.39109 1.44235 1.01755 0.85631 0.79549 0.78892 0.77672 1.21209 1.19608 1.19794 1.21067 0.92296 0.95298 0.96585 1.21387 0.99584 0.93975 0.99198 0.87788 0.87988 0.87799 0.74625 0.90697 0.89963 0.82069 0.82967 0.74773 0.91002 0.95122 0.94415 0.92577 0.84918 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.39 71.24 0.74 -0.62 16 2 C 0.51 9.05 7.94 87.66 0.70 9.75 16 3 O -0.60 -17.14 17.10 -3.03 -0.05 -17.19 16 4 N -0.72 -10.76 5.55 -466.81 -2.59 -13.35 16 5 C 0.16 3.00 5.80 85.63 0.50 3.50 16 6 C -0.05 -1.11 5.25 -19.87 -0.10 -1.21 16 7 C -0.12 -2.52 9.70 22.27 0.22 -2.30 16 8 C -0.03 -0.77 9.52 22.27 0.21 -0.56 16 9 C -0.67 -21.23 5.81 22.27 0.13 -21.10 16 10 S 2.70 97.27 5.65 -56.49 -0.32 96.95 16 11 O -0.99 -36.41 17.28 -128.00 -2.21 -38.63 16 12 O -0.99 -40.91 16.54 -128.00 -2.12 -43.03 16 13 N -1.10 -42.60 5.46 -172.53 -0.94 -43.55 16 14 C 0.28 13.05 2.76 44.24 0.12 13.17 16 15 H 0.03 1.36 7.25 -2.39 -0.02 1.35 16 16 C -0.15 -7.31 9.29 71.98 0.67 -6.64 16 17 C -0.54 -27.05 8.76 25.60 0.22 -26.83 16 18 H 0.07 3.27 7.81 -2.91 -0.02 3.24 16 19 C 0.02 1.08 5.30 84.66 0.45 1.53 16 20 N -0.91 -48.99 11.32 21.45 0.24 -48.75 16 21 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 22 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 C -0.03 -1.02 8.92 22.27 0.20 -0.82 16 26 C -0.12 -3.03 9.70 22.27 0.22 -2.82 16 27 H 0.10 0.30 7.91 -2.39 -0.02 0.28 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.42 4.17 8.30 -92.70 -0.77 3.40 16 31 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 32 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.15 3.54 7.62 -2.91 -0.02 3.52 16 35 H 0.42 14.54 8.83 -96.74 -0.85 13.68 16 36 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 37 H 0.03 1.37 7.64 -2.38 -0.02 1.35 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.26 13.64 8.31 -92.71 -0.77 12.86 16 40 H 0.13 4.29 7.61 -2.91 -0.02 4.27 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -70.75 362.97 -2.25 -73.00 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.55 Total: 26.58 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.26 Total: -34.94 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -3.29 Total: -105.65 kcal Atomic # 8 Polarization: -94.46 SS G_CDS: -4.38 Total: -98.84 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 97.27 SS G_CDS: -0.32 Total: 96.95 kcal Total: -70.75 -2.25 -73.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263720272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.722 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds