Wall clock time and date at job start Fri Apr 10 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47207 * 59.99059 * 9 7 5 11 11 H 1.48496 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46829 * 299.99728 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.38361 * 119.84883 * 269.72732 * 16 13 3 18 18 C 1.37958 * 120.13967 * 179.72487 * 17 16 13 19 19 C 1.39583 * 119.85523 * 0.54925 * 18 17 16 20 20 C 1.47844 * 120.14445 * 179.70896 * 19 18 17 21 21 O 1.21552 * 119.99474 * 180.02562 * 20 19 18 22 22 N 1.34770 * 120.00092 * 0.02562 * 20 19 18 23 23 C 1.46507 * 119.99868 * 180.02562 * 22 20 19 24 24 C 1.39577 * 119.70703 * 359.72181 * 19 18 17 25 25 C 1.37958 * 119.85497 * 0.02562 * 24 19 18 26 26 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 27 27 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 29 29 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 30 30 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 31 31 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 32 32 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 33 33 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 34 34 H 1.07999 * 119.93436 * 359.97438 * 17 16 13 35 35 H 1.07999 * 120.07536 * 180.24822 * 18 17 16 36 36 H 0.96999 * 120.00483 * 0.02562 * 22 20 19 37 37 H 1.08998 * 109.47098 * 180.02562 * 23 22 20 38 38 H 1.08999 * 109.47314 * 300.00530 * 23 22 20 39 39 H 1.09001 * 109.46854 * 60.00599 * 23 22 20 40 40 H 1.08003 * 120.07492 * 179.97438 * 24 19 18 41 41 H 1.08000 * 119.92670 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5944 2.3728 2.9229 11 1 5.6512 2.7019 5.1323 12 1 5.6003 0.5046 4.1070 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 5.0718 2.6800 -1.2643 18 6 6.4091 2.4331 -1.4967 19 6 6.7914 1.3022 -2.2201 20 6 8.2224 1.0348 -2.4784 21 8 8.5522 0.0494 -3.1090 22 7 9.1609 1.8836 -2.0147 23 6 10.5789 1.6189 -2.2712 24 6 5.8169 0.4251 -2.6986 25 6 4.4833 0.6808 -2.4548 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0923 3.1802 1.0756 32 1 1.3617 1.8097 1.9453 33 1 3.2794 3.5880 4.5379 34 1 4.7745 3.5572 -0.7089 35 1 7.1583 3.1159 -1.1240 36 1 8.8977 2.6698 -1.5111 37 1 11.1827 2.4075 -1.8222 38 1 10.8539 0.6585 -1.8352 39 1 10.7550 1.5936 -3.3465 40 1 6.1060 -0.4515 -3.2594 41 1 3.7282 0.0032 -2.8249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264014825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:03 Heat of formation + Delta-G solvation = -105.200567 kcal Electronic energy + Delta-G solvation = -26155.972949 eV Core-core repulsion = 22355.073153 eV Total energy + Delta-G solvation = -3800.899797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35758 -39.43909 -38.35161 -37.68677 -36.90745 -35.86890 -34.67501 -32.78539 -32.17524 -31.50751 -28.48852 -28.08222 -25.07852 -24.86096 -23.77792 -23.25672 -21.81818 -20.09974 -19.48529 -18.63227 -18.58785 -18.07694 -17.50223 -17.07862 -16.41872 -16.40178 -16.09825 -15.82691 -15.45371 -15.25454 -14.79744 -14.68965 -14.60724 -14.27543 -14.06475 -13.81429 -13.67225 -13.58468 -13.33891 -13.17857 -13.14630 -13.02416 -12.73915 -12.66672 -12.35411 -12.24591 -12.12722 -12.08486 -11.71639 -11.56719 -11.27277 -10.64164 -10.53603 -10.21547 -10.16784 -9.76553 -8.14615 -6.27916 -0.81785 -0.46816 0.19759 1.42781 1.44552 1.45848 1.52388 2.04081 2.06758 2.43421 2.54406 2.79776 3.17152 3.26952 3.50770 3.67194 3.79621 4.00033 4.15372 4.26630 4.39008 4.46849 4.48157 4.52049 4.58600 4.74180 4.82208 4.87508 4.92966 4.96660 5.03270 5.05656 5.18887 5.25038 5.30174 5.44782 5.54613 5.62881 5.77722 5.93915 6.12596 6.32009 6.83709 6.98345 7.42110 8.93109 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.005449 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.134229 B = 5137.383806 C = 7008.443405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.984 5.984 4 C 0.258 3.742 5 C -0.541 4.541 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.925 5.925 9 Si 0.949 3.051 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.695 3.305 14 O -0.976 6.976 15 O -0.989 6.989 16 C -0.652 4.652 17 C -0.026 4.026 18 C -0.102 4.102 19 C -0.095 4.095 20 C 0.556 3.444 21 O -0.567 6.567 22 N -0.717 5.717 23 C 0.082 3.918 24 C -0.089 4.089 25 C -0.033 4.033 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.417 0.583 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.154 0.846 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -3.482 -9.576 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.823 5.823 4 C 0.135 3.865 5 C -0.581 4.581 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.565 5.565 9 Si 0.774 3.226 10 H -0.185 1.185 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.787 3.213 14 O -0.966 6.966 15 O -0.980 6.980 16 C -0.740 4.740 17 C -0.046 4.046 18 C -0.121 4.121 19 C -0.099 4.099 20 C 0.343 3.657 21 O -0.448 6.448 22 N -0.369 5.369 23 C -0.061 4.061 24 C -0.109 4.109 25 C -0.052 4.052 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.255 0.745 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.172 0.828 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.973 -3.573 -10.369 14.170 hybrid contribution 1.060 0.187 1.219 1.626 sum 10.033 -3.385 -9.150 13.994 Atomic orbital electron populations 1.22206 0.95536 1.03411 1.01606 1.21364 0.94923 0.80981 1.03644 1.57306 1.78663 1.24317 1.22044 1.18822 0.96585 0.91208 0.79915 1.21760 1.02633 1.27592 1.06077 0.91508 1.25690 1.00394 0.94710 0.97427 1.70042 1.37851 1.30996 1.17572 0.85747 0.80602 0.78342 0.77923 1.18482 1.21294 1.19856 1.01575 0.74324 0.72893 0.72476 1.93506 1.70513 1.75525 1.57104 1.93510 1.86765 1.32086 1.85647 1.31179 1.25842 1.05528 1.11470 1.21030 0.93002 0.97329 0.93200 1.21642 0.96463 0.96802 0.97166 1.20339 0.93433 0.96604 0.99507 1.18325 0.85841 0.82740 0.78817 1.90752 1.82920 1.29321 1.41774 1.45746 1.07556 1.27482 1.56101 1.21792 0.79055 1.03155 1.02083 1.21497 0.91654 0.99374 0.98325 1.21102 0.97469 0.93869 0.92751 0.93058 0.88972 0.93244 0.89168 0.89999 0.95655 0.95554 0.92538 0.84133 0.81553 0.74524 0.86770 0.92711 0.92270 0.82812 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 10.24 71.98 0.74 -4.15 16 2 C 0.12 3.72 6.06 86.38 0.52 4.24 16 3 N -0.98 -38.80 2.77 -519.85 -1.44 -40.24 16 4 C 0.26 12.44 5.44 85.63 0.47 12.90 16 5 C -0.54 -27.09 9.38 25.60 0.24 -26.85 16 6 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 7 C 0.02 0.92 5.46 84.65 0.46 1.38 16 8 N -0.93 -51.55 13.29 21.45 0.28 -51.27 16 9 Si 0.95 40.26 29.54 68.60 2.03 42.29 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 S 2.70 103.02 5.65 -56.49 -0.32 102.70 16 14 O -0.98 -36.66 16.23 -128.00 -2.08 -38.74 16 15 O -0.99 -44.37 15.81 -128.00 -2.02 -46.39 16 16 C -0.65 -21.87 5.98 22.33 0.13 -21.74 16 17 C -0.03 -0.85 9.50 22.23 0.21 -0.64 16 18 C -0.10 -2.62 9.54 22.53 0.21 -2.40 16 19 C -0.10 -2.54 5.87 -20.09 -0.12 -2.66 16 20 C 0.56 14.24 7.77 86.79 0.67 14.92 16 21 O -0.57 -18.05 16.35 -3.88 -0.06 -18.12 16 22 N -0.72 -12.70 5.66 -487.47 -2.76 -15.46 16 23 C 0.08 1.11 10.70 127.77 1.37 2.47 16 24 C -0.09 -2.41 9.60 22.53 0.22 -2.20 16 25 C -0.03 -0.94 9.50 22.23 0.21 -0.73 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 2.43 7.61 -2.39 -0.02 2.41 16 30 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 31 H 0.03 1.36 6.91 -2.39 -0.02 1.34 16 32 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.14 4.80 7.60 -2.91 -0.02 4.78 16 35 H 0.17 2.92 6.41 -2.91 -0.02 2.90 16 36 H 0.42 5.19 6.86 -92.71 -0.64 4.55 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.15 3.74 7.65 -2.91 -0.02 3.72 16 41 H 0.16 3.91 7.60 -2.91 -0.02 3.89 16 Total: -1.00 -70.39 363.50 -0.62 -71.01 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.42 Total: 19.68 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 5.34 Total: -25.45 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -3.91 Total: -106.97 kcal Atomic # 8 Polarization: -99.09 SS G_CDS: -4.17 Total: -103.25 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 103.02 SS G_CDS: -0.32 Total: 102.70 kcal Total: -70.39 -0.62 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264014825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.190 kcal (2) G-P(sol) polarization free energy of solvation -70.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds