Wall clock time and date at job start Fri Apr 10 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47147 * 2 1 4 4 C 1.36872 * 119.99879 * 278.22778 * 3 2 1 5 5 H 1.07998 * 119.99743 * 171.25135 * 4 3 2 6 6 C 1.39040 * 120.00222 * 351.25830 * 4 3 2 7 7 N 1.31368 * 120.00140 * 30.54149 * 6 4 3 8 8 Si 1.86801 * 120.00259 * 210.54893 * 6 4 3 9 9 H 1.48504 * 109.47280 * 94.99117 * 8 6 4 10 10 H 1.48495 * 109.47301 * 214.99350 * 8 6 4 11 11 H 1.48503 * 109.46922 * 334.99753 * 8 6 4 12 12 C 1.34778 * 120.00195 * 98.23131 * 3 2 1 13 13 O 1.21588 * 120.00011 * 184.91598 * 12 3 2 14 14 C 1.47728 * 119.99738 * 4.91303 * 12 3 2 15 15 C 1.39663 * 120.15126 * 132.53126 * 14 12 3 16 16 C 1.37911 * 119.84893 * 179.97438 * 15 14 12 17 17 C 1.50708 * 119.92671 * 179.97438 * 16 15 14 18 18 C 1.38394 * 120.15461 * 0.02562 * 16 15 14 19 19 C 1.50693 * 119.85079 * 179.71986 * 18 16 15 20 20 C 1.38353 * 120.30263 * 359.97438 * 18 16 15 21 21 S 1.76205 * 119.92681 * 179.97438 * 20 18 16 22 22 N 1.65601 * 107.21283 * 294.99769 * 21 20 18 23 23 O 1.42092 * 106.39979 * 48.53630 * 21 20 18 24 24 O 1.42096 * 106.40332 * 181.45881 * 21 20 18 25 25 C 1.37961 * 120.15072 * 0.02562 * 20 18 16 26 26 H 1.09001 * 109.47474 * 190.92500 * 1 2 3 27 27 H 1.09003 * 109.46802 * 310.92305 * 1 2 3 28 28 H 1.08996 * 109.47083 * 70.92008 * 1 2 3 29 29 H 1.09000 * 109.47366 * 239.99926 * 2 1 3 30 30 H 1.09000 * 109.47183 * 120.00133 * 2 1 3 31 31 H 0.97004 * 120.00038 * 180.02562 * 7 6 4 32 32 H 1.08006 * 120.07666 * 359.95477 * 15 14 12 33 33 H 1.09001 * 109.47092 * 270.02937 * 17 16 15 34 34 H 1.09000 * 109.46492 * 30.02424 * 17 16 15 35 35 H 1.08997 * 109.47003 * 150.01769 * 17 16 15 36 36 H 1.09006 * 109.47114 * 90.00313 * 19 18 16 37 37 H 1.09002 * 109.47424 * 209.99937 * 19 18 16 38 38 H 1.09001 * 109.47431 * 330.00370 * 19 18 16 39 39 H 0.96997 * 119.99561 * 150.00301 * 22 21 20 40 40 H 0.97000 * 120.00204 * 329.99771 * 22 21 20 41 41 H 1.08001 * 120.07545 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0865 2.0830 -1.1732 5 1 2.3099 3.1395 -1.1582 6 6 1.8680 1.4357 -2.3842 7 7 1.0551 0.4054 -2.4410 8 14 2.7306 2.0311 -3.9304 9 1 3.9724 1.2437 -4.1389 10 1 1.8307 1.8547 -5.0984 11 1 3.0747 3.4682 -3.7831 12 6 2.4005 1.9609 1.1552 13 8 2.7208 3.1338 1.1700 14 6 2.4303 1.1713 2.4033 15 6 3.5464 1.2252 3.2411 16 6 3.5673 0.4858 4.4051 17 6 4.7711 0.5422 5.3101 18 6 2.4859 -0.3087 4.7435 19 6 2.5186 -1.1186 6.0139 20 6 1.3770 -0.3668 3.9183 21 16 0.0058 -1.3822 4.3585 22 7 0.5292 -2.9530 4.3272 23 8 -0.2934 -1.0859 5.7156 24 8 -0.9421 -1.2541 3.3077 25 6 1.3427 0.3676 2.7509 26 1 -0.3634 -1.0090 0.1948 27 1 -0.3633 0.6732 0.7765 28 1 -0.3633 0.3359 -0.9712 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9030 -0.0464 -3.2858 32 1 4.3914 1.8442 2.9779 33 1 5.4807 -0.2324 5.0195 34 1 5.2450 1.5200 5.2237 35 1 4.4581 0.3801 6.3415 36 1 2.1088 -0.5271 6.8326 37 1 1.9224 -2.0219 5.8844 38 1 3.5483 -1.3927 6.2436 39 1 0.1276 -3.6098 4.9172 40 1 1.2374 -3.2162 3.7188 41 1 0.4762 0.3216 2.1078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265842046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:13 Heat of formation + Delta-G solvation = -88.699346 kcal Electronic energy + Delta-G solvation = -26859.929809 eV Core-core repulsion = 23059.745559 eV Total energy + Delta-G solvation = -3800.184250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45969 -39.76976 -38.30991 -37.21122 -36.94975 -34.89479 -34.20622 -33.55022 -33.37639 -31.42155 -29.08025 -27.99231 -26.63310 -24.12710 -24.04903 -23.11186 -20.99792 -20.40085 -18.98857 -18.71665 -18.44204 -17.80013 -17.63322 -17.08533 -16.65927 -16.35402 -16.09579 -15.86449 -15.59493 -15.23921 -14.95979 -14.48503 -14.11509 -13.91248 -13.68702 -13.61418 -13.37740 -13.23827 -13.20020 -13.16258 -13.14688 -12.98206 -12.91379 -12.72547 -12.67869 -12.34700 -12.14138 -12.08270 -11.86585 -11.70215 -11.21474 -10.78004 -10.58561 -10.32346 -9.93832 -9.59755 -8.46578 -5.88416 -0.65497 -0.34409 -0.02173 1.31881 1.41209 1.52578 1.79679 2.12843 2.21594 2.38694 2.67955 2.84570 3.00371 3.41613 3.64990 3.72820 3.80766 3.98286 4.16948 4.28756 4.36122 4.46133 4.61360 4.71974 4.73024 4.78164 4.82786 4.85474 4.94526 5.09014 5.14764 5.18473 5.26036 5.29241 5.34168 5.36062 5.44414 5.75794 5.88946 5.97163 6.38929 6.43610 7.07022 7.34266 7.92863 8.49175 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.004592 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.319177 B = 6095.538349 C = 7298.992273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.111 3.889 3 N -0.430 5.430 4 C -0.362 4.362 5 H 0.075 0.925 6 C 0.017 3.983 7 N -0.847 5.847 8 Si 0.982 3.018 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.280 1.280 12 C 0.448 3.552 13 O -0.642 6.642 14 C -0.136 4.136 15 C -0.036 4.036 16 C -0.106 4.106 17 C -0.113 4.113 18 C 0.024 3.976 19 C -0.149 4.149 20 C -0.683 4.683 21 S 2.725 3.275 22 N -1.226 6.226 23 O -0.978 6.978 24 O -0.994 6.994 25 C -0.030 4.030 26 H 0.069 0.931 27 H 0.022 0.978 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.281 0.719 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.435 0.565 40 H 0.431 0.569 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -13.791 15.039 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 N -0.145 5.145 4 C -0.488 4.488 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.483 5.483 8 Si 0.805 3.195 9 H -0.192 1.192 10 H -0.193 1.193 11 H -0.205 1.205 12 C 0.238 3.762 13 O -0.533 6.533 14 C -0.140 4.140 15 C -0.055 4.055 16 C -0.107 4.107 17 C -0.169 4.169 18 C 0.023 3.977 19 C -0.205 4.205 20 C -0.769 4.769 21 S 2.812 3.188 22 N -0.907 5.907 23 O -0.967 6.967 24 O -0.984 6.984 25 C -0.049 4.049 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.269 0.731 40 H 0.262 0.738 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.401 -12.943 15.053 20.141 hybrid contribution 0.787 0.771 -1.583 1.929 sum 4.188 -12.172 13.469 18.631 Atomic orbital electron populations 1.22204 0.95405 1.00573 1.02243 1.21915 0.95500 0.82171 1.01539 1.44006 1.51804 1.12759 1.05894 1.19572 1.50400 0.95219 0.83638 0.90668 1.25956 0.94991 0.96571 1.01349 1.70185 1.27358 1.22256 1.28488 0.85129 0.78873 0.78539 0.76985 1.19174 1.19298 1.20479 1.18410 0.86198 0.87329 0.84223 1.90541 1.58134 1.18156 1.86493 1.20053 0.97348 1.00080 0.96501 1.21486 0.96007 0.95362 0.92648 1.20173 0.98115 0.96951 0.95419 1.20960 0.93437 1.03914 0.98604 1.19913 0.90038 0.93308 0.94467 1.21501 1.06612 0.99432 0.92932 1.30534 1.20134 1.21121 1.05118 1.00742 0.72121 0.73216 0.72703 1.52673 1.55210 1.27157 1.55654 1.93570 1.83382 1.84352 1.35417 1.93588 1.59166 1.86400 1.59199 1.21596 0.97838 0.91235 0.94270 0.91233 0.95954 0.90047 0.88978 0.91898 0.90856 0.85258 0.88714 0.91073 0.88495 0.88187 0.89668 0.86542 0.73139 0.73839 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 8.73 71.98 0.63 -5.99 16 2 C 0.11 5.15 4.89 86.38 0.42 5.58 16 3 N -0.43 -23.30 2.64 -638.95 -1.69 -24.99 16 4 C -0.36 -20.90 9.35 84.10 0.79 -20.12 16 5 H 0.08 4.75 7.34 -2.91 -0.02 4.73 16 6 C 0.02 0.88 5.06 84.95 0.43 1.31 16 7 N -0.85 -41.95 8.06 21.68 0.17 -41.78 16 8 Si 0.98 41.33 29.65 68.60 2.03 43.37 16 9 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.45 24.23 7.20 86.75 0.62 24.85 16 13 O -0.64 -39.65 16.61 -3.99 -0.07 -39.72 16 14 C -0.14 -5.83 4.99 -20.09 -0.10 -5.93 16 15 C -0.04 -1.26 9.36 22.54 0.21 -1.05 16 16 C -0.11 -2.71 5.87 -19.90 -0.12 -2.83 16 17 C -0.11 -1.79 9.18 71.24 0.65 -1.14 16 18 C 0.02 0.59 5.88 -19.80 -0.12 0.47 16 19 C -0.15 -2.22 7.89 71.23 0.56 -1.65 16 20 C -0.68 -19.91 5.90 22.23 0.13 -19.78 16 21 S 2.73 67.46 5.47 -56.49 -0.31 67.15 16 22 N -1.23 -15.59 8.14 37.02 0.30 -15.29 16 23 O -0.98 -26.72 16.45 -128.00 -2.11 -28.82 16 24 O -0.99 -33.10 16.96 -128.00 -2.17 -35.27 16 25 C -0.03 -1.13 6.95 22.54 0.16 -0.97 16 26 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.02 1.02 6.29 -2.39 -0.02 1.01 16 28 H 0.08 4.04 5.89 -2.39 -0.01 4.02 16 29 H 0.09 4.43 5.89 -2.39 -0.01 4.42 16 30 H 0.06 2.57 5.19 -2.39 -0.01 2.56 16 31 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 32 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.10 1.07 6.70 -2.39 -0.02 1.05 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.08 1.03 5.29 -2.39 -0.01 1.02 16 38 H 0.12 0.99 6.69 -2.39 -0.02 0.98 16 39 H 0.43 3.11 8.96 -96.75 -0.87 2.24 16 40 H 0.43 3.78 8.96 -96.74 -0.87 2.92 16 41 H 0.14 5.93 3.22 -2.91 -0.01 5.92 16 Total: -1.00 -80.15 335.88 -0.17 -80.33 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.62 Total: 22.27 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.27 Total: -27.24 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.21 Total: -82.06 kcal Atomic # 8 Polarization: -99.47 SS G_CDS: -4.34 Total: -103.81 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 67.46 SS G_CDS: -0.31 Total: 67.15 kcal Total: -80.15 -0.17 -80.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265842046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.374 kcal (2) G-P(sol) polarization free energy of solvation -80.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds