Wall clock time and date at job start Fri Apr 10 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 110.54075 * 2 1 4 4 O 1.42101 * 110.54272 * 223.24973 * 2 1 3 5 5 N 1.65598 * 104.44914 * 111.62598 * 2 1 3 6 6 C 1.46496 * 119.99988 * 64.99853 * 5 2 1 7 7 C 1.53010 * 109.46758 * 164.99690 * 6 5 2 8 8 C 1.53005 * 109.46802 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46802 * 180.02562 * 8 7 6 10 10 C 1.34776 * 119.99692 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.47634 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.40016 * 119.89772 * 0.24248 * 12 10 9 14 14 C 1.36315 * 120.10695 * 180.25948 * 13 12 10 15 15 C 1.40885 * 119.89334 * 359.47978 * 14 13 12 16 16 C 1.41111 * 120.10536 * 180.30167 * 15 14 13 17 17 H 1.07996 * 120.00198 * 154.52656 * 16 15 14 18 18 C 1.40227 * 119.99546 * 334.52369 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.06447 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.06669 * 18 16 15 21 21 H 1.48503 * 109.47357 * 59.99742 * 20 18 16 22 22 H 1.48498 * 109.47368 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47336 * 300.00015 * 20 18 16 24 24 C 1.40888 * 119.79168 * 0.27218 * 15 14 13 25 25 C 1.36313 * 119.89186 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47027 * 308.37594 * 1 2 3 27 27 H 1.09000 * 109.47211 * 68.37312 * 1 2 3 28 28 H 1.08997 * 109.47078 * 188.37557 * 1 2 3 29 29 H 0.96998 * 119.99507 * 245.00051 * 5 2 1 30 30 H 1.09000 * 109.47090 * 45.00001 * 6 5 2 31 31 H 1.08994 * 109.47439 * 284.99675 * 6 5 2 32 32 H 1.09000 * 109.47066 * 60.00296 * 7 6 5 33 33 H 1.08994 * 109.47133 * 300.00172 * 7 6 5 34 34 H 1.09000 * 109.47033 * 60.00319 * 8 7 6 35 35 H 1.09002 * 109.46906 * 300.00307 * 8 7 6 36 36 H 0.97001 * 120.00109 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.94850 * 0.03457 * 13 12 10 38 38 H 1.08004 * 120.05046 * 179.74690 * 14 13 12 39 39 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.05374 * 180.02562 * 24 15 14 41 41 H 1.07999 * 119.94443 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9706 1.8507 7 6 2.6877 -2.3830 3.0901 8 6 2.3358 -3.8237 3.4665 9 7 3.0983 -4.2184 4.6535 10 6 2.9499 -5.4547 5.1694 11 8 2.1829 -6.2422 4.6499 12 6 3.7179 -5.8523 6.3659 13 6 4.5960 -4.9416 6.9660 14 6 5.3112 -5.3060 8.0678 15 6 5.1575 -6.5976 8.6092 16 6 5.8909 -6.9773 9.7534 17 1 5.5131 -7.7517 10.4045 18 6 7.1102 -6.3492 10.0449 19 7 7.7316 -5.6676 9.1196 20 14 7.8462 -6.4871 11.7563 21 1 8.0935 -7.9162 12.0751 22 1 9.1288 -5.7403 11.8052 23 1 6.9015 -5.9148 12.7490 24 6 4.2688 -7.5086 8.0049 25 6 3.5625 -7.1373 6.8998 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6920 -0.0236 2.1255 30 1 2.1393 -2.6333 1.0218 31 1 0.8243 -2.0405 2.0646 32 1 2.4391 -1.7203 3.9190 33 1 3.7541 -2.3131 2.8762 34 1 2.5840 -4.4867 2.6377 35 1 1.2692 -3.8932 3.6805 36 1 3.7100 -3.5900 5.0681 37 1 4.7096 -3.9501 6.5532 38 1 5.9913 -4.6042 8.5276 39 1 8.5749 -5.2328 9.3213 40 1 4.1474 -8.4997 8.4167 41 1 2.8814 -7.8351 6.4357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270341980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:25 Heat of formation + Delta-G solvation = -103.500931 kcal Electronic energy + Delta-G solvation = -23892.778159 eV Core-core repulsion = 20091.952064 eV Total energy + Delta-G solvation = -3800.826095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.17622 -37.55085 -37.28475 -36.63527 -36.30513 -34.33085 -33.89120 -31.19643 -29.95586 -29.83369 -29.46395 -26.33976 -24.83245 -22.27106 -21.72821 -20.90879 -19.81814 -19.60662 -17.99466 -17.55304 -16.89441 -16.79718 -16.62928 -15.87200 -15.69067 -15.39528 -14.86797 -14.32745 -14.06997 -13.84729 -13.74670 -13.63527 -13.30968 -13.06984 -12.89103 -12.75454 -12.48368 -12.37549 -12.16057 -11.98993 -11.86098 -11.67748 -11.52350 -11.41870 -11.29839 -11.24194 -11.00338 -10.66357 -10.08765 -9.91216 -9.58399 -9.38697 -9.02277 -8.66440 -7.75333 -7.56696 -7.05455 -4.63304 -0.15163 2.20050 2.28602 2.90808 2.92657 2.96393 3.00497 3.38965 3.67913 3.71777 3.80093 3.83984 4.26178 4.50213 4.52993 4.53817 4.65946 4.75580 5.13047 5.19445 5.29601 5.34627 5.53964 5.58056 5.85173 5.91777 6.00356 6.12983 6.28868 6.53856 6.74000 6.80201 6.87352 7.01851 7.10328 7.40547 7.61637 7.75279 7.82845 8.04358 8.18427 8.36920 8.60259 8.72190 9.02748 9.86611 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.001880 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.592839 B =14887.673681 C =15810.794880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.961 6.961 4 O -0.956 6.956 5 N -1.120 6.120 6 C 0.116 3.884 7 C -0.139 4.139 8 C 0.124 3.876 9 N -0.743 5.743 10 C 0.572 3.428 11 O -0.576 6.576 12 C -0.285 4.285 13 C -0.063 4.063 14 C -0.177 4.177 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.773 5.773 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.238 4.238 25 C -0.022 4.022 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.419 0.581 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 12.386 -10.711 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.708 3.292 3 O -0.951 6.951 4 O -0.946 6.946 5 N -0.880 5.880 6 C -0.010 4.010 7 C -0.178 4.178 8 C -0.001 4.001 9 N -0.397 5.397 10 C 0.367 3.633 11 O -0.458 6.458 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.197 4.197 15 C 0.125 3.875 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.396 5.396 20 Si 0.738 3.262 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.258 4.258 25 C -0.042 4.042 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.254 0.746 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.235 12.111 -11.968 19.370 hybrid contribution 0.279 0.455 1.490 1.583 sum -8.956 12.566 -10.478 18.652 Atomic orbital electron populations 1.30531 1.28479 1.11765 1.11599 1.04656 0.77527 0.73783 0.73253 1.93626 1.77992 1.37783 1.85740 1.93632 1.76923 1.61769 1.62231 1.55556 1.74348 1.21433 1.36636 1.21249 0.99279 0.81549 0.98964 1.21959 1.01580 0.96917 0.97370 1.21071 0.96525 0.93591 0.88899 1.45870 1.47025 1.15993 1.30799 1.18587 0.81031 0.80176 0.83541 1.90636 1.39907 1.51908 1.63305 1.18888 1.09974 0.97993 1.02078 1.20468 0.95404 0.96299 0.96055 1.20975 1.02821 0.97067 0.98794 1.17794 0.88787 0.90495 0.90416 1.19819 1.02727 1.17301 1.07173 0.89739 1.26101 0.96847 0.92879 0.98921 1.69729 1.13572 1.22752 1.33539 0.86248 0.78467 0.79827 0.81641 1.18663 1.20057 1.18484 1.20726 1.05980 0.99181 0.99875 1.20369 0.95627 0.93909 0.94258 0.85218 0.85350 0.85268 0.74623 0.89625 0.91386 0.90407 0.90132 0.91634 0.91796 0.76692 0.89340 0.86206 0.90161 0.88363 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.23 10.89 101.05 1.10 -1.13 16 2 S 2.62 17.70 6.10 -107.50 -0.66 17.04 16 3 O -0.96 -9.91 18.08 -57.54 -1.04 -10.95 16 4 O -0.96 -10.37 17.50 -57.54 -1.01 -11.38 16 5 N -1.12 -6.54 5.88 -10.61 -0.06 -6.60 16 6 C 0.12 0.74 6.13 -4.04 -0.02 0.71 16 7 C -0.14 -1.09 5.47 -26.72 -0.15 -1.24 16 8 C 0.12 1.47 5.67 -4.04 -0.02 1.45 16 9 N -0.74 -11.41 5.50 -61.31 -0.34 -11.75 16 10 C 0.57 11.71 7.76 -12.43 -0.10 11.61 16 11 O -0.58 -13.30 16.32 5.29 0.09 -13.22 16 12 C -0.28 -6.34 5.89 -104.73 -0.62 -6.95 16 13 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 14 C -0.18 -4.25 8.63 -39.27 -0.34 -4.59 16 15 C 0.13 3.22 5.57 -106.80 -0.59 2.62 16 16 C -0.44 -10.84 9.05 -37.75 -0.34 -11.18 16 17 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 18 C 0.07 1.69 5.15 -17.31 -0.09 1.61 16 19 N -0.77 -18.25 10.95 55.56 0.61 -17.64 16 20 Si 0.91 17.03 29.59 -169.99 -5.03 12.00 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 22 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 24 C -0.24 -5.68 9.73 -39.27 -0.38 -6.06 16 25 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 26 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.42 2.01 8.62 -34.46 -0.30 1.71 16 30 H 0.09 0.59 7.69 -51.93 -0.40 0.19 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 5.37 6.47 -40.82 -0.26 5.11 16 37 H 0.09 1.58 6.37 -52.49 -0.33 1.24 16 38 H 0.12 2.90 6.18 -52.48 -0.32 2.58 16 39 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 40 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 41 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -34.29 362.55 -9.65 -43.95 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.37 Total: 8.87 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.31 Total: -15.77 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.21 Total: -36.00 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.96 Total: -35.54 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 17.70 SS G_CDS: -0.66 Total: 17.04 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.29 -9.65 -43.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270341980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.552 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds