Wall clock time and date at job start Fri Apr 10 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 110.54075 * 2 1 4 4 O 1.42101 * 110.54272 * 223.24973 * 2 1 3 5 5 N 1.65598 * 104.44914 * 111.62598 * 2 1 3 6 6 C 1.46496 * 119.99988 * 64.99853 * 5 2 1 7 7 C 1.53010 * 109.46758 * 164.99690 * 6 5 2 8 8 C 1.53005 * 109.46802 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46802 * 180.02562 * 8 7 6 10 10 C 1.34776 * 119.99692 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.47634 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.40016 * 119.89772 * 0.24248 * 12 10 9 14 14 C 1.36315 * 120.10695 * 180.25948 * 13 12 10 15 15 C 1.40885 * 119.89334 * 359.47978 * 14 13 12 16 16 C 1.41111 * 120.10536 * 180.30167 * 15 14 13 17 17 H 1.07996 * 120.00198 * 154.52656 * 16 15 14 18 18 C 1.40227 * 119.99546 * 334.52369 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.06447 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.06669 * 18 16 15 21 21 H 1.48503 * 109.47357 * 59.99742 * 20 18 16 22 22 H 1.48498 * 109.47368 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47336 * 300.00015 * 20 18 16 24 24 C 1.40888 * 119.79168 * 0.27218 * 15 14 13 25 25 C 1.36313 * 119.89186 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47027 * 308.37594 * 1 2 3 27 27 H 1.09000 * 109.47211 * 68.37312 * 1 2 3 28 28 H 1.08997 * 109.47078 * 188.37557 * 1 2 3 29 29 H 0.96998 * 119.99507 * 245.00051 * 5 2 1 30 30 H 1.09000 * 109.47090 * 45.00001 * 6 5 2 31 31 H 1.08994 * 109.47439 * 284.99675 * 6 5 2 32 32 H 1.09000 * 109.47066 * 60.00296 * 7 6 5 33 33 H 1.08994 * 109.47133 * 300.00172 * 7 6 5 34 34 H 1.09000 * 109.47033 * 60.00319 * 8 7 6 35 35 H 1.09002 * 109.46906 * 300.00307 * 8 7 6 36 36 H 0.97001 * 120.00109 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.94850 * 0.03457 * 13 12 10 38 38 H 1.08004 * 120.05046 * 179.74690 * 14 13 12 39 39 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.05374 * 180.02562 * 24 15 14 41 41 H 1.07999 * 119.94443 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9706 1.8507 7 6 2.6877 -2.3830 3.0901 8 6 2.3358 -3.8237 3.4665 9 7 3.0983 -4.2184 4.6535 10 6 2.9499 -5.4547 5.1694 11 8 2.1829 -6.2422 4.6499 12 6 3.7179 -5.8523 6.3659 13 6 4.5960 -4.9416 6.9660 14 6 5.3112 -5.3060 8.0678 15 6 5.1575 -6.5976 8.6092 16 6 5.8909 -6.9773 9.7534 17 1 5.5131 -7.7517 10.4045 18 6 7.1102 -6.3492 10.0449 19 7 7.7316 -5.6676 9.1196 20 14 7.8462 -6.4871 11.7563 21 1 8.0935 -7.9162 12.0751 22 1 9.1288 -5.7403 11.8052 23 1 6.9015 -5.9148 12.7490 24 6 4.2688 -7.5086 8.0049 25 6 3.5625 -7.1373 6.8998 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6920 -0.0236 2.1255 30 1 2.1393 -2.6333 1.0218 31 1 0.8243 -2.0405 2.0646 32 1 2.4391 -1.7203 3.9190 33 1 3.7541 -2.3131 2.8762 34 1 2.5840 -4.4867 2.6377 35 1 1.2692 -3.8932 3.6805 36 1 3.7100 -3.5900 5.0681 37 1 4.7096 -3.9501 6.5532 38 1 5.9913 -4.6042 8.5276 39 1 8.5749 -5.2328 9.3213 40 1 4.1474 -8.4997 8.4167 41 1 2.8814 -7.8351 6.4357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270341980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:25 Heat of formation + Delta-G solvation = -129.935993 kcal Electronic energy + Delta-G solvation = -23893.924469 eV Core-core repulsion = 20091.952064 eV Total energy + Delta-G solvation = -3801.972405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75100 -38.94734 -38.18610 -37.46183 -36.98436 -35.65183 -35.45723 -32.50046 -31.33748 -31.14903 -30.23592 -27.89150 -25.91314 -23.56686 -22.95646 -22.54416 -21.18529 -20.36072 -19.35081 -18.68718 -18.17082 -17.57664 -17.25884 -17.18059 -16.70251 -16.62824 -15.76302 -15.73484 -15.47733 -15.22913 -14.99049 -14.41324 -14.18166 -14.00859 -13.89801 -13.83287 -13.67828 -13.62709 -13.20108 -13.18022 -13.07477 -12.84786 -12.64313 -12.57083 -12.45058 -12.34726 -12.16183 -11.87331 -11.77606 -11.35267 -11.11519 -10.69964 -10.35583 -10.02392 -9.55719 -9.37948 -8.77760 -6.47356 -0.63983 0.45937 1.16300 1.39780 1.45068 1.52667 1.78676 2.14015 2.19102 2.45304 2.80606 2.92952 3.31168 3.70394 3.84899 3.98678 4.06297 4.11073 4.23836 4.33787 4.33909 4.46204 4.60369 4.64358 4.65629 4.90754 4.94027 4.99643 5.04445 5.17379 5.17517 5.27106 5.31706 5.58906 5.63351 5.83919 5.95892 6.00602 6.13303 6.24505 6.55306 6.73916 6.78565 6.90393 7.47326 8.17249 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.001880 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.592839 B =14887.673681 C =15810.794880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.623 3.377 3 O -1.003 7.003 4 O -1.005 7.005 5 N -1.116 6.116 6 C 0.113 3.887 7 C -0.129 4.129 8 C 0.119 3.881 9 N -0.726 5.726 10 C 0.570 3.430 11 O -0.606 6.606 12 C -0.293 4.293 13 C -0.053 4.053 14 C -0.198 4.198 15 C 0.100 3.900 16 C -0.475 4.475 17 H 0.084 0.916 18 C 0.037 3.963 19 N -0.800 5.800 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.258 1.258 24 C -0.253 4.253 25 C -0.035 4.035 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.424 0.576 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.297 0.703 40 H 0.103 0.897 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 14.014 -10.507 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.720 3.280 3 O -0.993 6.993 4 O -0.995 6.995 5 N -0.877 5.877 6 C -0.014 4.014 7 C -0.168 4.168 8 C -0.005 4.005 9 N -0.378 5.378 10 C 0.364 3.636 11 O -0.491 6.491 12 C -0.297 4.297 13 C -0.072 4.072 14 C -0.217 4.217 15 C 0.097 3.903 16 C -0.502 4.502 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.423 5.423 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.189 1.189 23 H -0.182 1.182 24 C -0.272 4.272 25 C -0.054 4.054 26 H 0.169 0.831 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.260 0.740 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.054 13.783 -11.788 20.736 hybrid contribution 0.437 -0.029 1.318 1.389 sum -9.617 13.753 -10.470 19.780 Atomic orbital electron populations 1.30330 1.23156 1.13701 1.13444 1.04158 0.79197 0.72104 0.72577 1.93569 1.80077 1.39460 1.86207 1.93571 1.79272 1.62723 1.63930 1.55318 1.74982 1.21302 1.36111 1.21309 1.00754 0.81449 0.97865 1.21868 1.01779 0.94440 0.98717 1.21305 0.96341 0.95866 0.86969 1.45743 1.46600 1.14293 1.31147 1.18367 0.80593 0.81530 0.83138 1.90618 1.41145 1.53247 1.64050 1.19215 1.09981 0.97744 1.02767 1.20747 0.93849 0.97745 0.94872 1.21020 1.03838 0.96767 1.00072 1.18156 0.89552 0.91361 0.91259 1.20076 1.03929 1.18514 1.07694 0.89741 1.26914 0.96568 0.92041 1.02637 1.69752 1.14196 1.23045 1.35331 0.85159 0.77860 0.79866 0.76380 1.18406 1.18853 1.18173 1.20860 1.06450 0.99514 1.00403 1.20532 0.95777 0.94825 0.94294 0.83101 0.83876 0.83414 0.73994 0.90498 0.88472 0.88606 0.90340 0.92513 0.91259 0.75431 0.85555 0.86843 0.89216 0.87909 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.02 10.89 113.37 1.23 -0.78 16 2 S 2.62 32.31 6.10 -56.49 -0.34 31.97 16 3 O -1.00 -20.25 18.08 -127.65 -2.31 -22.55 16 4 O -1.00 -21.63 17.50 -127.65 -2.23 -23.86 16 5 N -1.12 -10.81 5.88 -187.49 -1.10 -11.91 16 6 C 0.11 1.14 6.13 86.38 0.53 1.67 16 7 C -0.13 -1.68 5.47 30.60 0.17 -1.51 16 8 C 0.12 2.57 5.67 86.38 0.49 3.06 16 9 N -0.73 -20.81 5.50 -466.14 -2.57 -23.37 16 10 C 0.57 22.82 7.76 86.72 0.67 23.49 16 11 O -0.61 -27.76 16.32 -4.00 -0.07 -27.83 16 12 C -0.29 -12.94 5.89 -19.94 -0.12 -13.05 16 13 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 14 C -0.20 -9.55 8.63 22.47 0.19 -9.36 16 15 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 16 C -0.47 -23.76 9.05 23.46 0.21 -23.54 16 17 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 18 C 0.04 1.71 5.15 85.35 0.44 2.15 16 19 N -0.80 -37.84 10.95 21.87 0.24 -37.60 16 20 Si 0.99 34.43 29.59 68.60 2.03 36.46 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 23 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 24 C -0.25 -12.42 9.73 22.47 0.22 -12.20 16 25 C -0.04 -1.66 9.52 22.25 0.21 -1.45 16 26 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.42 3.25 8.62 -96.75 -0.83 2.42 16 30 H 0.08 0.94 7.69 -2.39 -0.02 0.92 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.41 9.90 6.47 -92.71 -0.60 9.30 16 37 H 0.13 4.21 6.37 -2.91 -0.02 4.19 16 38 H 0.11 5.56 6.18 -2.91 -0.02 5.54 16 39 H 0.30 12.51 8.29 -92.70 -0.77 11.74 16 40 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.10 4.72 7.63 -2.91 -0.02 4.70 16 Total: -1.00 -76.23 362.55 -2.37 -78.60 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.36 Total: 28.64 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.35 Total: -28.54 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -3.43 Total: -72.88 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -4.61 Total: -74.25 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 16 Polarization: 32.31 SS G_CDS: -0.34 Total: 31.97 kcal Total: -76.23 -2.37 -78.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270341980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.340 kcal (2) G-P(sol) polarization free energy of solvation -76.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds