Wall clock time and date at job start Fri Apr 10 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00109 * 2 1 4 4 S 1.65598 * 119.99878 * 179.97438 * 2 1 3 5 5 O 1.42101 * 106.40238 * 336.46738 * 4 2 1 6 6 O 1.42099 * 106.40264 * 203.54673 * 4 2 1 7 7 C 1.76206 * 107.21555 * 90.00747 * 4 2 1 8 8 C 1.38361 * 119.85107 * 270.24982 * 7 4 2 9 9 C 1.37955 * 120.14138 * 180.25791 * 8 7 4 10 10 C 1.39575 * 119.85263 * 359.49245 * 9 8 7 11 11 C 1.47848 * 120.14487 * 180.27853 * 10 9 8 12 12 O 1.21550 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00008 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47072 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47227 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00453 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00490 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46984 * 60.00020 * 20 18 16 22 22 H 1.48505 * 109.47398 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47052 * 300.00474 * 20 18 16 24 24 C 1.39579 * 119.71401 * 0.25207 * 10 9 8 25 25 C 1.37958 * 119.84937 * 0.02562 * 24 10 9 26 26 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47590 * 300.00866 * 1 2 3 28 28 H 1.09001 * 109.46593 * 60.00570 * 1 2 3 29 29 H 1.08999 * 109.46845 * 269.99684 * 3 2 1 30 30 H 1.09006 * 109.47150 * 29.99517 * 3 2 1 31 31 H 1.09000 * 109.47075 * 149.99054 * 3 2 1 32 32 H 1.07998 * 119.92846 * 0.02562 * 8 7 4 33 33 H 1.08002 * 120.07573 * 179.77464 * 9 8 7 34 34 H 0.96996 * 119.99601 * 359.97438 * 13 11 10 35 35 H 1.08997 * 109.47252 * 300.00049 * 14 13 11 36 36 H 1.09007 * 109.46893 * 60.00137 * 14 13 11 37 37 H 1.09005 * 109.46987 * 299.99854 * 15 14 13 38 38 H 1.08998 * 109.47290 * 60.00029 * 15 14 13 39 39 H 0.96993 * 120.00086 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.07575 * 180.02562 * 24 10 9 41 41 H 1.08006 * 119.92205 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4341 0.0006 5 8 1.4112 -2.4063 0.5454 6 8 3.5758 -1.1566 0.5451 7 6 2.5539 -1.8864 -1.6823 8 6 1.6141 -2.6589 -2.3415 9 6 1.8148 -3.0209 -3.6574 10 6 2.9639 -2.5973 -4.3270 11 6 3.1826 -2.9764 -5.7392 12 8 2.3610 -3.6588 -6.3195 13 7 4.2935 -2.5662 -6.3828 14 6 4.5105 -2.9423 -7.7820 15 6 5.8352 -2.3520 -8.2693 16 6 6.0581 -2.7383 -9.7087 17 1 5.3277 -3.3440 -10.2246 18 6 7.1939 -2.3178 -10.3675 19 7 8.0832 -1.5798 -9.7395 20 14 7.4706 -2.7972 -12.1515 21 1 6.3582 -2.2720 -12.9834 22 1 8.7558 -2.2231 -12.6249 23 1 7.5173 -4.2772 -12.2648 24 6 3.9055 -1.8138 -3.6577 25 6 3.6953 -1.4636 -2.3400 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 2.3792 1.5833 -1.0277 30 1 1.6084 2.0285 0.5138 31 1 3.1498 1.1384 0.5140 32 1 0.7233 -2.9822 -1.8235 33 1 1.0823 -3.6269 -4.1699 34 1 4.9493 -2.0220 -5.9196 35 1 4.5439 -4.0286 -7.8653 36 1 3.6944 -2.5560 -8.3928 37 1 5.8013 -1.2656 -8.1861 38 1 6.6514 -2.7379 -7.6586 39 1 8.8821 -1.2836 -10.2030 40 1 4.7964 -1.4825 -4.1703 41 1 4.4233 -0.8577 -1.8209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273075884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:32 Heat of formation + Delta-G solvation = -83.954914 kcal Electronic energy + Delta-G solvation = -24576.219338 eV Core-core repulsion = 20776.240822 eV Total energy + Delta-G solvation = -3799.978516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23899 -38.39220 -37.68358 -36.60980 -36.20362 -35.09870 -33.06652 -31.89550 -31.39808 -29.54652 -28.56882 -25.52745 -25.08917 -23.96314 -23.03123 -21.16169 -20.55249 -19.47259 -18.54680 -17.95982 -17.39897 -16.69223 -16.46160 -15.81492 -15.22758 -15.14458 -15.10653 -14.90670 -14.55948 -14.51746 -14.03098 -13.80879 -13.65098 -13.37812 -13.06753 -13.02866 -12.84812 -12.81081 -12.43535 -12.35171 -12.03984 -12.00299 -11.60739 -11.33061 -11.26579 -11.08479 -10.72270 -10.43505 -10.04633 -9.74985 -9.62263 -9.55053 -9.41181 -9.33762 -8.68961 -8.45326 -6.15337 -4.18730 -0.12421 0.20743 0.96041 2.37565 2.73551 3.27348 3.30175 3.31576 3.32797 3.40371 3.58770 3.86789 4.31239 4.36072 4.39119 4.50064 4.70038 4.85412 4.92471 4.92821 5.05972 5.12174 5.21802 5.24796 5.31751 5.34815 5.44821 5.54168 5.67325 5.72618 5.93894 6.01094 6.21723 6.22285 6.40903 6.60157 6.70297 7.41406 7.51535 7.76802 7.82308 8.18286 8.37836 8.86652 9.46484 10.96215 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.002176 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.236026 B =12865.523892 C =13374.273195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.004 6.004 3 C 0.081 3.919 4 S 2.694 3.306 5 O -0.953 6.953 6 O -0.952 6.952 7 C -0.666 4.666 8 C -0.029 4.029 9 C -0.085 4.085 10 C -0.067 4.067 11 C 0.540 3.460 12 O -0.538 6.538 13 N -0.711 5.711 14 C 0.120 3.880 15 C 0.012 3.988 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.109 4.109 25 C -0.026 4.026 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.398 0.602 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.141 0.859 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 6.334 22.114 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.844 5.844 3 C -0.064 4.064 4 S 2.784 3.216 5 O -0.943 6.943 6 O -0.942 6.942 7 C -0.752 4.752 8 C -0.048 4.048 9 C -0.105 4.105 10 C -0.071 4.071 11 C 0.326 3.674 12 O -0.416 6.416 13 N -0.360 5.360 14 C -0.002 4.002 15 C -0.025 4.025 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.129 4.129 25 C -0.045 4.045 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.233 0.767 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.159 0.841 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.911 5.504 22.349 26.894 hybrid contribution 0.582 0.198 -1.662 1.772 sum -13.329 5.702 20.687 25.262 Atomic orbital electron populations 1.21625 0.77860 1.04025 1.02621 1.57262 1.15536 1.21693 1.89892 1.21651 0.97375 0.84867 1.02539 1.01992 0.73205 0.72446 0.73920 1.93585 1.66056 1.58369 1.76313 1.93582 1.39981 1.84311 1.76326 1.31114 1.04161 1.13329 1.26643 1.20884 0.97149 0.92736 0.94069 1.21431 0.96788 0.98287 0.93981 1.20574 0.95357 0.96636 0.94484 1.18260 0.82570 0.80858 0.85744 1.90769 1.44530 1.38451 1.67883 1.46331 1.21615 1.52914 1.15185 1.21840 1.00847 0.99948 0.77573 1.19332 0.89825 0.96559 0.96787 1.20985 1.05873 1.33294 0.96111 0.92238 1.24998 0.95825 0.94868 0.98553 1.69938 1.10516 1.35715 1.37075 0.86550 0.77459 0.78933 0.84468 1.20088 1.21200 1.20067 1.21557 0.99120 0.97340 0.94842 1.20859 0.94376 0.95283 0.94033 0.89518 0.91402 0.91819 0.92324 0.90316 0.89629 0.83747 0.83533 0.76661 0.92120 0.92138 0.95866 0.95839 0.92703 0.84124 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.67 59.84 0.64 1.05 16 2 N -1.00 -6.73 3.58 -129.20 -0.46 -7.19 16 3 C 0.08 0.41 10.70 59.85 0.64 1.05 16 4 S 2.69 25.38 5.68 -107.50 -0.61 24.77 16 5 O -0.95 -10.98 15.84 -57.17 -0.91 -11.88 16 6 O -0.95 -11.07 15.87 -57.17 -0.91 -11.98 16 7 C -0.67 -6.60 5.98 -39.49 -0.24 -6.83 16 8 C -0.03 -0.29 9.50 -39.64 -0.38 -0.67 16 9 C -0.09 -1.01 9.60 -39.19 -0.38 -1.39 16 10 C -0.07 -0.89 5.87 -104.97 -0.62 -1.51 16 11 C 0.54 9.04 7.77 -12.33 -0.10 8.94 16 12 O -0.54 -10.74 16.35 5.32 0.09 -10.66 16 13 N -0.71 -11.97 5.51 -61.25 -0.34 -12.31 16 14 C 0.12 2.46 5.61 -4.04 -0.02 2.43 16 15 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 16 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.11 -1.20 9.54 -39.18 -0.37 -1.57 16 25 C -0.03 -0.26 9.50 -39.64 -0.38 -0.64 16 26 H 0.09 0.44 6.91 -51.93 -0.36 0.08 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.09 0.46 7.02 -51.93 -0.36 0.10 16 32 H 0.14 1.12 7.61 -52.49 -0.40 0.72 16 33 H 0.15 1.68 7.65 -52.49 -0.40 1.28 16 34 H 0.40 5.69 6.51 -40.82 -0.27 5.42 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.14 1.29 6.41 -52.49 -0.34 0.96 16 41 H 0.15 1.14 7.60 -52.48 -0.40 0.74 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -35.02 362.21 -9.16 -44.18 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.44 Total: 0.46 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.75 Total: -11.97 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.06 Total: -44.42 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.73 Total: -34.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 25.38 SS G_CDS: -0.61 Total: 24.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.02 -9.16 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273075884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.778 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds