Wall clock time and date at job start Fri Apr 10 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00109 * 2 1 4 4 S 1.65598 * 119.99878 * 179.97438 * 2 1 3 5 5 O 1.42101 * 106.40238 * 336.46738 * 4 2 1 6 6 O 1.42099 * 106.40264 * 203.54673 * 4 2 1 7 7 C 1.76206 * 107.21555 * 90.00747 * 4 2 1 8 8 C 1.38361 * 119.85107 * 270.24982 * 7 4 2 9 9 C 1.37955 * 120.14138 * 180.25791 * 8 7 4 10 10 C 1.39575 * 119.85263 * 359.49245 * 9 8 7 11 11 C 1.47848 * 120.14487 * 180.27853 * 10 9 8 12 12 O 1.21550 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00008 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47072 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47227 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00453 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00490 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46984 * 60.00020 * 20 18 16 22 22 H 1.48505 * 109.47398 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47052 * 300.00474 * 20 18 16 24 24 C 1.39579 * 119.71401 * 0.25207 * 10 9 8 25 25 C 1.37958 * 119.84937 * 0.02562 * 24 10 9 26 26 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47590 * 300.00866 * 1 2 3 28 28 H 1.09001 * 109.46593 * 60.00570 * 1 2 3 29 29 H 1.08999 * 109.46845 * 269.99684 * 3 2 1 30 30 H 1.09006 * 109.47150 * 29.99517 * 3 2 1 31 31 H 1.09000 * 109.47075 * 149.99054 * 3 2 1 32 32 H 1.07998 * 119.92846 * 0.02562 * 8 7 4 33 33 H 1.08002 * 120.07573 * 179.77464 * 9 8 7 34 34 H 0.96996 * 119.99601 * 359.97438 * 13 11 10 35 35 H 1.08997 * 109.47252 * 300.00049 * 14 13 11 36 36 H 1.09007 * 109.46893 * 60.00137 * 14 13 11 37 37 H 1.09005 * 109.46987 * 299.99854 * 15 14 13 38 38 H 1.08998 * 109.47290 * 60.00029 * 15 14 13 39 39 H 0.96993 * 120.00086 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.07575 * 180.02562 * 24 10 9 41 41 H 1.08006 * 119.92205 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4341 0.0006 5 8 1.4112 -2.4063 0.5454 6 8 3.5758 -1.1566 0.5451 7 6 2.5539 -1.8864 -1.6823 8 6 1.6141 -2.6589 -2.3415 9 6 1.8148 -3.0209 -3.6574 10 6 2.9639 -2.5973 -4.3270 11 6 3.1826 -2.9764 -5.7392 12 8 2.3610 -3.6588 -6.3195 13 7 4.2935 -2.5662 -6.3828 14 6 4.5105 -2.9423 -7.7820 15 6 5.8352 -2.3520 -8.2693 16 6 6.0581 -2.7383 -9.7087 17 1 5.3277 -3.3440 -10.2246 18 6 7.1939 -2.3178 -10.3675 19 7 8.0832 -1.5798 -9.7395 20 14 7.4706 -2.7972 -12.1515 21 1 6.3582 -2.2720 -12.9834 22 1 8.7558 -2.2231 -12.6249 23 1 7.5173 -4.2772 -12.2648 24 6 3.9055 -1.8138 -3.6577 25 6 3.6953 -1.4636 -2.3400 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 2.3792 1.5833 -1.0277 30 1 1.6084 2.0285 0.5138 31 1 3.1498 1.1384 0.5140 32 1 0.7233 -2.9822 -1.8235 33 1 1.0823 -3.6269 -4.1699 34 1 4.9493 -2.0220 -5.9196 35 1 4.5439 -4.0286 -7.8653 36 1 3.6944 -2.5560 -8.3928 37 1 5.8013 -1.2656 -8.1861 38 1 6.6514 -2.7379 -7.6586 39 1 8.8821 -1.2836 -10.2030 40 1 4.7964 -1.4825 -4.1703 41 1 4.4233 -0.8577 -1.8209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273075884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:32 Heat of formation + Delta-G solvation = -109.288166 kcal Electronic energy + Delta-G solvation = -24577.317871 eV Core-core repulsion = 20776.240822 eV Total energy + Delta-G solvation = -3801.077048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39776 -39.51409 -38.50077 -37.15381 -36.95580 -36.74417 -34.94568 -33.05256 -32.27571 -31.23740 -28.94079 -27.15613 -25.64876 -25.20498 -23.95908 -22.89570 -21.83226 -20.21105 -19.42687 -18.83123 -18.53837 -18.25487 -17.45480 -16.93658 -16.61857 -16.52542 -16.04522 -15.90127 -15.63430 -15.29822 -15.12298 -15.05003 -14.68023 -14.33528 -14.18061 -14.09654 -13.83214 -13.61826 -13.31121 -13.25256 -13.21788 -12.95147 -12.59913 -12.58335 -12.56028 -12.40927 -12.28144 -12.15503 -11.73711 -11.51493 -11.10706 -10.68589 -10.61256 -10.24606 -10.13717 -10.04916 -8.25718 -6.36155 -0.92519 -0.64900 0.12147 1.41546 1.42730 1.43449 1.51358 1.91860 2.03721 2.41532 2.47110 2.65915 3.09343 3.12194 3.48517 3.61519 3.73783 3.87385 4.10065 4.18155 4.36684 4.43948 4.45332 4.53600 4.62113 4.75998 4.79514 4.80295 4.83729 4.85782 4.98297 5.03077 5.07244 5.08199 5.14520 5.42863 5.53883 5.54426 5.56604 5.75431 6.12955 6.42275 6.76456 7.02914 7.33225 8.85886 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.002176 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.236026 B =12865.523892 C =13374.273195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.000 6.000 3 C 0.071 3.929 4 S 2.711 3.289 5 O -0.975 6.975 6 O -0.974 6.974 7 C -0.661 4.661 8 C -0.027 4.027 9 C -0.091 4.091 10 C -0.088 4.088 11 C 0.543 3.457 12 O -0.576 6.576 13 N -0.706 5.706 14 C 0.139 3.861 15 C 0.022 3.978 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.106 4.106 25 C -0.027 4.027 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.411 0.589 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.266 0.734 40 H 0.156 0.844 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 7.241 22.954 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.841 5.841 3 C -0.073 4.073 4 S 2.800 3.200 5 O -0.965 6.965 6 O -0.965 6.965 7 C -0.747 4.747 8 C -0.046 4.046 9 C -0.111 4.111 10 C -0.091 4.091 11 C 0.331 3.669 12 O -0.457 6.457 13 N -0.357 5.357 14 C 0.015 3.985 15 C -0.015 4.015 16 C -0.587 4.587 17 H 0.078 0.922 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.126 4.126 25 C -0.046 4.046 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.163 0.837 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.174 0.826 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.503 6.419 23.209 28.110 hybrid contribution 0.714 -0.015 -1.803 1.940 sum -13.789 6.405 21.405 26.255 Atomic orbital electron populations 1.21871 0.76570 1.04407 1.04231 1.57100 1.16295 1.21148 1.89536 1.21879 0.97456 0.84425 1.03550 1.01400 0.72562 0.72650 0.73369 1.93554 1.66426 1.59829 1.76701 1.93551 1.41402 1.84784 1.76724 1.31357 1.03954 1.12517 1.26901 1.21113 0.97982 0.92223 0.93293 1.21513 0.96412 0.98403 0.94758 1.20316 0.97150 0.99078 0.92567 1.18733 0.81485 0.79699 0.86978 1.90741 1.45661 1.40162 1.69121 1.46104 1.22422 1.53315 1.13875 1.21340 0.98640 0.98926 0.79563 1.19142 0.91048 0.95739 0.95593 1.21425 1.06145 1.33401 0.97699 0.92229 1.25857 0.95552 0.94749 1.02943 1.70040 1.10997 1.36641 1.38819 0.85512 0.77584 0.78808 0.79230 1.19315 1.20622 1.19414 1.21725 0.99007 0.96517 0.95326 1.21153 0.94770 0.95134 0.93571 0.89789 0.89805 0.90290 0.91289 0.88163 0.90162 0.81514 0.83716 0.75123 0.93098 0.92934 0.97025 0.97173 0.92493 0.82632 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 10.67 127.77 1.36 1.90 16 2 N -1.00 -11.04 3.58 -562.67 -2.02 -13.05 16 3 C 0.07 0.54 10.70 127.77 1.37 1.91 16 4 S 2.71 46.35 5.68 -56.49 -0.32 46.03 16 5 O -0.97 -21.02 15.84 -128.00 -2.03 -23.05 16 6 O -0.97 -21.18 15.87 -128.00 -2.03 -23.21 16 7 C -0.66 -11.89 5.98 22.33 0.13 -11.76 16 8 C -0.03 -0.50 9.50 22.23 0.21 -0.29 16 9 C -0.09 -2.11 9.60 22.53 0.22 -1.89 16 10 C -0.09 -2.28 5.87 -20.09 -0.12 -2.40 16 11 C 0.54 18.31 7.77 86.79 0.67 18.99 16 12 O -0.58 -23.48 16.35 -3.87 -0.06 -23.54 16 13 N -0.71 -23.94 5.51 -465.97 -2.57 -26.50 16 14 C 0.14 5.79 5.61 86.38 0.48 6.28 16 15 C 0.02 1.09 5.09 29.85 0.15 1.24 16 16 C -0.55 -30.05 9.11 25.60 0.23 -29.81 16 17 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -53.38 13.29 21.45 0.28 -53.10 16 20 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C -0.11 -2.19 9.54 22.53 0.21 -1.98 16 25 C -0.03 -0.49 9.50 22.23 0.21 -0.27 16 26 H 0.08 0.67 6.91 -2.39 -0.02 0.66 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.34 8.07 -2.38 -0.02 0.32 16 31 H 0.08 0.71 7.02 -2.39 -0.02 0.70 16 32 H 0.17 2.26 7.61 -2.91 -0.02 2.24 16 33 H 0.15 3.33 7.65 -2.91 -0.02 3.31 16 34 H 0.41 11.64 6.51 -92.71 -0.60 11.04 16 35 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.16 2.62 6.41 -2.91 -0.02 2.60 16 41 H 0.17 2.20 7.60 -2.91 -0.02 2.18 16 Total: -1.00 -74.77 362.21 -0.66 -75.43 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.45 Total: 13.18 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 5.61 Total: -17.19 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.30 Total: -92.65 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -4.12 Total: -69.80 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 46.35 SS G_CDS: -0.32 Total: 46.03 kcal Total: -74.77 -0.66 -75.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273075884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.857 kcal (2) G-P(sol) polarization free energy of solvation -74.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds