Wall clock time and date at job start Fri Apr 10 2020 18:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99742 * 2 1 4 4 C 1.34776 * 119.99949 * 180.02562 * 2 1 3 5 5 O 1.21547 * 120.00369 * 4.83092 * 4 2 1 6 6 C 1.47849 * 119.99685 * 184.83906 * 4 2 1 7 7 C 1.39597 * 120.14535 * 320.79960 * 6 4 2 8 8 C 1.37934 * 119.85459 * 179.97438 * 7 6 4 9 9 C 1.38378 * 120.14799 * 0.27880 * 8 7 6 10 10 C 1.38342 * 120.28497 * 359.44252 * 9 8 7 11 11 S 1.76205 * 119.92427 * 180.30105 * 10 9 8 12 12 O 1.42102 * 106.39995 * 23.79527 * 11 10 9 13 13 O 1.42103 * 106.40420 * 156.71556 * 11 10 9 14 14 N 1.65599 * 107.21751 * 270.25252 * 11 10 9 15 15 C 1.46506 * 119.99985 * 65.00470 * 14 11 10 16 16 C 1.53002 * 109.47246 * 164.99746 * 15 14 11 17 17 C 1.50697 * 109.46670 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00445 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99501 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00425 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47259 * 60.00542 * 21 19 17 23 23 H 1.48503 * 109.46897 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47340 * 300.00270 * 21 19 17 25 25 C 1.37976 * 120.14846 * 0.55882 * 10 9 8 26 26 H 1.08997 * 109.47350 * 269.99216 * 1 2 3 27 27 H 1.08996 * 109.47446 * 30.00169 * 1 2 3 28 28 H 1.09007 * 109.47121 * 149.99812 * 1 2 3 29 29 H 1.08997 * 109.47403 * 265.64759 * 3 2 1 30 30 H 1.08997 * 109.47290 * 25.65252 * 3 2 1 31 31 H 1.08999 * 109.47238 * 145.65154 * 3 2 1 32 32 H 1.08004 * 120.07298 * 0.02562 * 7 6 4 33 33 H 1.08003 * 119.92548 * 180.02562 * 8 7 6 34 34 H 1.07990 * 119.85750 * 179.70438 * 9 8 7 35 35 H 0.96993 * 120.00490 * 244.99632 * 14 11 10 36 36 H 1.09007 * 109.46530 * 285.00106 * 15 14 11 37 37 H 1.08998 * 109.47020 * 44.99340 * 15 14 11 38 38 H 1.08996 * 109.46965 * 299.99484 * 16 15 14 39 39 H 1.09000 * 109.46705 * 59.99847 * 16 15 14 40 40 H 0.96990 * 119.99939 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.07227 * 179.74752 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5345 -2.2179 -0.0896 6 6 3.6134 -1.1695 0.1075 7 6 4.3668 -0.2034 -0.5617 8 6 5.7421 -0.2108 -0.4563 9 6 6.3756 -1.1765 0.3060 10 6 5.6345 -2.1332 0.9762 11 16 6.4505 -3.3537 1.9506 12 8 7.7100 -2.8032 2.3109 13 8 5.4995 -3.8080 2.9038 14 7 6.7691 -4.6406 0.9582 15 6 7.6991 -4.4880 -0.1634 16 6 8.1053 -5.8694 -0.6808 17 6 9.0614 -5.7123 -1.8350 18 1 9.3501 -4.7259 -2.1666 19 6 9.5675 -6.8279 -2.4676 20 7 9.2155 -8.0292 -2.0641 21 14 10.7522 -6.6333 -3.8987 22 1 11.9606 -5.8992 -3.4447 23 1 11.1464 -7.9741 -4.4008 24 1 10.0908 -5.8718 -4.9887 25 6 4.2581 -2.1371 0.8792 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 2.4467 1.5444 -1.0247 30 1 1.5769 2.0465 0.4449 31 1 3.1139 1.1592 0.5798 32 1 3.8739 0.5487 -1.1599 33 1 6.3262 0.5364 -0.9732 34 1 7.4528 -1.1808 0.3813 35 1 6.3402 -5.4954 1.1196 36 1 7.2145 -3.9282 -0.9635 37 1 8.5862 -3.9499 0.1707 38 1 8.5898 -6.4290 0.1192 39 1 7.2181 -6.4074 -1.0149 40 1 9.5713 -8.8139 -2.5094 41 1 3.6810 -2.8871 1.3997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273467116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:34 Heat of formation + Delta-G solvation = -103.261789 kcal Electronic energy + Delta-G solvation = -25199.026276 eV Core-core repulsion = 21398.210551 eV Total energy + Delta-G solvation = -3800.815725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57710 -39.51101 -38.42851 -37.06234 -37.00881 -36.80331 -34.72583 -32.88852 -32.35837 -31.01186 -28.94641 -27.54843 -26.41755 -24.51811 -24.21591 -22.96339 -21.42277 -20.41741 -19.18119 -18.66664 -18.17956 -17.86721 -17.39265 -17.24068 -16.97624 -16.80419 -16.44855 -15.93818 -15.51664 -15.42096 -15.14994 -14.66087 -14.49026 -14.37902 -14.01275 -13.83668 -13.45101 -13.43017 -13.33714 -13.28660 -13.21608 -13.14880 -12.96823 -12.89305 -12.73239 -12.44455 -12.35278 -11.91578 -11.49610 -11.32122 -11.19456 -10.62726 -10.51473 -10.32990 -10.23010 -9.78744 -8.18936 -6.30114 -0.72682 -0.43533 -0.12156 1.44858 1.45602 1.47821 1.55284 1.82946 1.98715 2.38314 2.44942 2.68943 3.15576 3.16125 3.37971 3.68664 3.79851 3.97153 4.18445 4.20834 4.24255 4.31455 4.43966 4.47022 4.55021 4.68950 4.70372 4.81542 4.85313 4.87603 4.89633 4.97385 5.01567 5.08406 5.37786 5.50858 5.62018 5.63885 5.81670 5.98646 6.13062 6.22410 6.85898 6.90777 7.39339 8.93167 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003072 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.190814 B = 9112.404662 C = 9757.358555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.058 3.942 4 C 0.551 3.449 5 O -0.580 6.580 6 C -0.167 4.167 7 C -0.028 4.028 8 C -0.131 4.131 9 C -0.007 4.007 10 C -0.683 4.683 11 S 2.709 3.291 12 O -0.978 6.978 13 O -0.989 6.989 14 N -1.113 6.113 15 C 0.132 3.868 16 C 0.019 3.981 17 C -0.543 4.543 18 H 0.073 0.927 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.013 3.987 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.158 0.842 35 H 0.420 0.580 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.001 0.999 39 H 0.004 0.996 40 H 0.263 0.737 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 25.234 2.099 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C -0.083 4.083 4 C 0.340 3.660 5 O -0.460 6.460 6 C -0.171 4.171 7 C -0.046 4.046 8 C -0.149 4.149 9 C -0.026 4.026 10 C -0.772 4.772 11 S 2.801 3.199 12 O -0.968 6.968 13 O -0.980 6.980 14 N -0.874 5.874 15 C 0.006 3.994 16 C -0.020 4.020 17 C -0.581 4.581 18 H 0.091 0.909 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.008 4.008 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.198 0.802 33 H 0.202 0.798 34 H 0.175 0.825 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.019 0.981 39 H 0.022 0.978 40 H 0.072 0.928 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.529 24.790 2.883 28.388 hybrid contribution -0.076 -1.027 -0.910 1.374 sum -13.605 23.763 1.973 27.453 Atomic orbital electron populations 1.21860 0.77554 1.04156 1.02706 1.47787 1.08188 1.06373 1.72025 1.22540 0.98292 0.83731 1.03765 1.18564 0.87338 0.83925 0.76153 1.90787 1.70601 1.33044 1.51596 1.19978 0.93020 0.99972 1.04099 1.22359 0.94481 0.94539 0.93184 1.21753 0.94480 0.99662 0.99048 1.21575 1.01376 0.90372 0.89274 1.30668 1.04657 1.19800 1.22100 1.01130 0.72959 0.72928 0.72869 1.93546 1.42189 1.79360 1.81702 1.93538 1.63758 1.81302 1.59386 1.55396 1.58516 1.26659 1.46849 1.21374 0.91211 1.00138 0.86653 1.19163 0.95701 0.91872 0.95278 1.21555 1.27132 0.93497 1.15952 0.90918 1.25978 0.98538 0.94889 1.00410 1.70092 1.45740 0.98476 1.43009 0.85470 0.79159 0.77218 0.79023 1.18973 1.21395 1.18860 1.20854 0.92362 0.95002 0.92553 0.91978 0.87346 0.92389 0.89392 0.87985 0.90298 0.80172 0.79845 0.82455 0.74426 0.91182 0.90678 0.98107 0.97777 0.92785 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.45 127.77 1.34 2.30 16 2 N -0.61 -9.42 3.27 -875.37 -2.87 -12.29 16 3 C 0.06 0.33 8.88 127.77 1.13 1.46 16 4 C 0.55 13.65 7.35 86.79 0.64 14.29 16 5 O -0.58 -19.83 16.47 -3.86 -0.06 -19.89 16 6 C -0.17 -3.80 5.24 -20.09 -0.11 -3.91 16 7 C -0.03 -0.39 7.57 22.53 0.17 -0.22 16 8 C -0.13 -1.82 10.03 22.23 0.22 -1.60 16 9 C -0.01 -0.14 9.52 22.33 0.21 0.07 16 10 C -0.68 -18.37 5.94 22.23 0.13 -18.24 16 11 S 2.71 86.94 5.73 -56.49 -0.32 86.62 16 12 O -0.98 -34.83 16.75 -128.00 -2.14 -36.98 16 13 O -0.99 -36.02 17.27 -128.00 -2.21 -38.24 16 14 N -1.11 -38.39 6.00 -187.47 -1.12 -39.51 16 15 C 0.13 5.10 6.16 86.38 0.53 5.63 16 16 C 0.02 0.94 5.11 29.85 0.15 1.09 16 17 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 21 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 25 C 0.01 0.35 9.10 22.53 0.21 0.56 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 0.53 8.07 -2.39 -0.02 0.51 16 28 H 0.06 1.00 7.36 -2.38 -0.02 0.98 16 29 H 0.09 0.10 6.90 -2.39 -0.02 0.09 16 30 H 0.10 0.12 8.04 -2.39 -0.02 0.11 16 31 H 0.08 0.50 5.81 -2.39 -0.01 0.49 16 32 H 0.18 1.06 5.30 -2.91 -0.02 1.05 16 33 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.16 2.99 7.61 -2.92 -0.02 2.97 16 35 H 0.42 14.03 8.65 -96.75 -0.84 13.19 16 36 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.07 2.82 7.75 -2.39 -0.02 2.80 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.26 14.90 8.31 -92.72 -0.77 14.13 16 41 H 0.13 3.95 7.61 -2.91 -0.02 3.93 16 Total: -1.00 -81.99 359.34 -0.87 -82.86 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.22 Total: 15.32 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 5.33 Total: -27.22 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.71 Total: -107.30 kcal Atomic # 8 Polarization: -90.69 SS G_CDS: -4.42 Total: -95.11 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 86.94 SS G_CDS: -0.32 Total: 86.62 kcal Total: -81.99 -0.87 -82.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273467116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.399 kcal (2) G-P(sol) polarization free energy of solvation -81.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds