Wall clock time and date at job start Fri Apr 10 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47125 * 2 1 4 4 S 1.65598 * 119.99999 * 164.99764 * 3 2 1 5 5 O 1.42104 * 106.39965 * 311.45933 * 4 3 2 6 6 O 1.42098 * 106.39976 * 178.53662 * 4 3 2 7 7 C 1.76198 * 107.21688 * 64.99872 * 4 3 2 8 8 C 1.38236 * 120.00067 * 269.72275 * 7 4 3 9 9 C 1.38237 * 120.00332 * 179.76579 * 8 7 4 10 10 C 1.38241 * 119.99472 * 0.51185 * 9 8 7 11 11 C 1.50700 * 119.99531 * 179.72107 * 10 9 8 12 12 C 1.50692 * 109.47131 * 270.02096 * 11 10 9 13 13 O 1.21298 * 120.00462 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00187 * 0.02562 * 14 12 11 16 16 C 1.37103 * 120.00270 * 180.02562 * 14 12 11 17 17 H 1.08007 * 119.99470 * 21.70366 * 16 14 12 18 18 C 1.38948 * 120.00363 * 201.70581 * 16 14 12 19 19 N 1.31410 * 119.99849 * 11.33758 * 18 16 14 20 20 Si 1.86803 * 120.00058 * 191.34014 * 18 16 14 21 21 H 1.48507 * 109.46718 * 85.06970 * 20 18 16 22 22 H 1.48495 * 109.47224 * 205.07022 * 20 18 16 23 23 H 1.48498 * 109.47222 * 325.07249 * 20 18 16 24 24 C 1.38228 * 120.00160 * 359.74614 * 10 9 8 25 25 C 1.38236 * 120.00194 * 90.00179 * 7 4 3 26 26 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47300 * 300.00556 * 1 2 3 28 28 H 1.09006 * 109.46965 * 60.00515 * 1 2 3 29 29 H 1.08997 * 109.47300 * 239.99444 * 2 1 3 30 30 H 1.09002 * 109.46668 * 119.99904 * 2 1 3 31 31 H 0.96998 * 119.99933 * 344.99651 * 3 2 1 32 32 H 1.07998 * 119.99695 * 359.97438 * 8 7 4 33 33 H 1.07995 * 120.00251 * 180.23421 * 9 8 7 34 34 H 1.08992 * 109.47327 * 30.02529 * 11 10 9 35 35 H 1.09004 * 109.46649 * 150.02162 * 11 10 9 36 36 H 1.08992 * 109.47100 * 92.17466 * 15 14 12 37 37 H 1.09004 * 109.47112 * 212.17758 * 15 14 12 38 38 H 1.08997 * 109.46717 * 332.17395 * 15 14 12 39 39 H 0.97000 * 119.99711 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.00249 * 179.97438 * 24 10 9 41 41 H 1.07996 * 119.99958 * 0.02562 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8848 0.9833 1.5648 6 8 3.7650 3.1064 0.2512 7 6 4.5894 0.9736 -0.8931 8 6 5.0395 -0.3263 -0.7573 9 6 5.8114 -0.8980 -1.7515 10 6 6.1421 -0.1660 -2.8766 11 6 6.9888 -0.7871 -3.9575 12 6 8.4444 -0.5258 -3.6677 13 8 8.7630 0.1026 -2.6803 14 7 9.3922 -0.9903 -4.5057 15 6 9.0076 -1.7487 -5.6986 16 6 10.7166 -0.7530 -4.2419 17 1 11.0335 -0.5208 -3.2358 18 6 11.6509 -0.8112 -5.2687 19 7 11.2503 -0.8709 -6.5189 20 14 13.4763 -0.8047 -4.8720 21 1 13.9242 -2.1901 -4.5798 22 1 14.2335 -0.2744 -6.0341 23 1 13.7222 0.0554 -3.6868 24 6 5.6965 1.1356 -3.0100 25 6 4.9201 1.7055 -2.0182 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.4150 2.1089 -0.2175 32 1 4.7853 -0.8965 0.1240 33 1 6.1599 -1.9148 -1.6471 34 1 6.8113 -1.8621 -3.9855 35 1 6.7260 -0.3502 -4.9209 36 1 8.9008 -1.0681 -6.5431 37 1 9.7765 -2.4881 -5.9227 38 1 8.0592 -2.2544 -5.5173 39 1 11.9026 -0.9111 -7.2357 40 1 5.9551 1.7077 -3.8888 41 1 4.5726 2.7227 -2.1221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273615491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:39 Heat of formation + Delta-G solvation = -78.357541 kcal Electronic energy + Delta-G solvation = -25134.902708 eV Core-core repulsion = 21335.166912 eV Total energy + Delta-G solvation = -3799.735796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52692 -38.11947 -37.32556 -36.15216 -35.89966 -34.77673 -32.74903 -31.59291 -30.94041 -30.04850 -27.95614 -26.17419 -24.35318 -23.28789 -22.71155 -22.06362 -19.69993 -18.98417 -18.10189 -17.40297 -16.93891 -16.48012 -16.12840 -15.59186 -15.35791 -15.03466 -14.74909 -14.58703 -14.33757 -14.03553 -13.85524 -13.45450 -13.41308 -12.89048 -12.37355 -12.30313 -12.24191 -12.17208 -12.09752 -11.99005 -11.89521 -11.72163 -11.57373 -11.34231 -11.24082 -10.96530 -10.92348 -10.72119 -10.39628 -10.27345 -9.79438 -9.10254 -9.07533 -8.89259 -8.42296 -7.75880 -6.36402 -3.92878 0.31948 0.93401 1.46098 2.89586 3.13691 3.22395 3.27793 3.52900 3.76234 3.81029 4.11613 4.27346 4.58544 4.74342 4.78397 4.83187 4.93868 4.97657 5.03902 5.07951 5.20650 5.44365 5.44750 5.52686 5.59449 5.69019 5.75039 5.78005 5.80331 5.96892 6.09477 6.15478 6.22040 6.33910 6.67341 6.69097 6.81765 6.97672 7.16155 7.52100 8.06216 8.42331 9.13119 9.35934 9.90643 10.67005 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.027926 B = 0.002561 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.414186 B =10929.616480 C =11341.716250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.110 3.890 3 N -1.120 6.120 4 S 2.699 3.301 5 O -0.960 6.960 6 O -0.962 6.962 7 C -0.688 4.688 8 C -0.022 4.022 9 C -0.129 4.129 10 C 0.018 3.982 11 C -0.108 4.108 12 C 0.447 3.553 13 O -0.582 6.582 14 N -0.446 5.446 15 C 0.111 3.889 16 C -0.305 4.305 17 H 0.099 0.901 18 C 0.030 3.970 19 N -0.884 5.884 20 Si 0.928 3.072 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.128 4.128 25 C -0.018 4.018 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.417 0.583 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.268 0.732 40 H 0.130 0.870 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.224 -1.378 5.405 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.880 5.880 4 S 2.790 3.210 5 O -0.950 6.950 6 O -0.952 6.952 7 C -0.776 4.776 8 C -0.042 4.042 9 C -0.148 4.148 10 C 0.018 3.982 11 C -0.148 4.148 12 C 0.234 3.766 13 O -0.467 6.467 14 N -0.165 5.165 15 C -0.033 4.033 16 C -0.433 4.433 17 H 0.117 0.883 18 C -0.173 4.173 19 N -0.524 5.524 20 Si 0.755 3.245 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.147 4.147 25 C -0.038 4.038 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.251 0.749 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.531 -0.797 6.457 21.538 hybrid contribution 0.956 -0.175 -1.022 1.410 sum -19.575 -0.973 5.435 20.339 Atomic orbital electron populations 1.21957 0.94116 1.03004 1.02710 1.21283 0.96360 0.81546 1.02407 1.55611 1.28932 1.14704 1.88793 1.01628 0.72230 0.73200 0.73929 1.93572 1.83778 1.74572 1.43097 1.93584 1.85171 1.29401 1.87063 1.30571 1.22263 1.06728 1.18037 1.20783 0.93530 0.92375 0.97463 1.21113 0.99121 1.00835 0.93727 1.19862 0.90680 0.93521 0.94164 1.20826 0.94501 1.01777 0.97707 1.19728 0.85775 0.84305 0.86745 1.90569 1.82341 1.44134 1.29647 1.43601 1.05687 1.45781 1.21388 1.21546 0.97055 0.96333 0.88351 1.19676 0.81030 1.46698 0.95914 0.88309 1.25345 1.00681 0.96690 0.94607 1.69993 1.34802 1.48958 0.98623 0.85909 0.81852 0.78626 0.78144 1.20276 1.20910 1.19386 1.21140 0.98607 0.94889 1.00052 1.20777 0.93771 0.98325 0.90900 0.90960 0.91817 0.91927 0.91520 0.90151 0.74903 0.84646 0.85255 0.88966 0.88794 0.92339 0.91051 0.95563 0.92202 0.85174 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 10.05 37.16 0.37 -0.37 16 2 C 0.11 0.73 6.94 -4.04 -0.03 0.70 16 3 N -1.12 -8.89 6.00 -10.61 -0.06 -8.95 16 4 S 2.70 32.64 5.74 -107.50 -0.62 32.02 16 5 O -0.96 -14.07 16.75 -57.17 -0.96 -15.03 16 6 O -0.96 -14.17 17.28 -57.17 -0.99 -15.16 16 7 C -0.69 -9.33 5.95 -39.58 -0.24 -9.57 16 8 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 9 C -0.13 -1.94 9.70 -39.58 -0.38 -2.33 16 10 C 0.02 0.30 4.37 -104.62 -0.46 -0.15 16 11 C -0.11 -1.85 4.35 -29.04 -0.13 -1.97 16 12 C 0.45 10.55 7.62 -10.99 -0.08 10.47 16 13 O -0.58 -16.05 15.72 5.54 0.09 -15.96 16 14 N -0.45 -11.16 3.02 -122.20 -0.37 -11.53 16 15 C 0.11 2.37 8.52 59.85 0.51 2.88 16 16 C -0.31 -8.45 9.31 -14.93 -0.14 -8.59 16 17 H 0.10 2.89 7.39 -52.48 -0.39 2.50 16 18 C 0.03 0.78 5.12 -17.47 -0.09 0.69 16 19 N -0.88 -23.17 10.56 55.50 0.59 -22.58 16 20 Si 0.93 20.71 29.57 -169.99 -5.03 15.68 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.13 -1.99 9.70 -39.58 -0.38 -2.37 16 25 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16 31 H 0.42 2.45 8.65 -34.47 -0.30 2.15 16 32 H 0.14 1.54 7.61 -52.49 -0.40 1.14 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.09 1.34 7.35 -51.93 -0.38 0.96 16 35 H 0.09 1.43 8.05 -51.93 -0.42 1.02 16 36 H 0.06 1.29 7.56 -51.93 -0.39 0.90 16 37 H 0.07 1.62 7.00 -51.93 -0.36 1.26 16 38 H 0.03 0.44 6.36 -51.93 -0.33 0.11 16 39 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 40 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 41 H 0.14 1.63 7.62 -52.49 -0.40 1.23 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -36.00 358.98 -9.18 -45.18 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.45 Total: 2.85 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.80 Total: -11.93 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.15 Total: -43.06 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.86 Total: -46.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 16 Polarization: 32.64 SS G_CDS: -0.62 Total: 32.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.00 -9.18 -45.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273615491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.177 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds