Wall clock time and date at job start Fri Apr 10 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46940 * 2 1 4 4 C 1.36940 * 119.99891 * 273.32636 * 3 2 1 5 5 H 1.07999 * 120.00318 * 138.35316 * 4 3 2 6 6 C 1.38811 * 119.99776 * 318.35696 * 4 3 2 7 7 N 1.31616 * 120.00233 * 344.39686 * 6 4 3 8 8 Si 1.86803 * 119.99928 * 164.40358 * 6 4 3 9 9 H 1.48499 * 109.47272 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47191 * 119.99506 * 8 6 4 11 11 H 1.48498 * 109.47170 * 239.99549 * 8 6 4 12 12 S 1.65593 * 120.00211 * 93.32366 * 3 2 1 13 13 O 1.42109 * 106.40265 * 156.46076 * 12 3 2 14 14 O 1.42100 * 106.40279 * 23.54137 * 12 3 2 15 15 C 1.76198 * 107.22086 * 269.99918 * 12 3 2 16 16 C 1.38362 * 119.84961 * 89.99840 * 15 12 3 17 17 C 1.37959 * 120.14061 * 179.97438 * 16 15 12 18 18 C 1.39572 * 119.85671 * 0.02574 * 17 16 15 19 19 C 1.47847 * 120.14812 * 179.97438 * 18 17 16 20 20 O 1.21557 * 119.99780 * 336.36995 * 19 18 17 21 21 N 1.34773 * 120.00446 * 156.09033 * 19 18 17 22 22 C 1.46494 * 120.00066 * 175.02398 * 21 19 18 23 23 C 1.46499 * 119.99988 * 355.03013 * 21 19 18 24 24 C 1.39577 * 119.71061 * 0.24625 * 18 17 16 25 25 C 1.37956 * 119.84694 * 359.45654 * 24 18 17 26 26 H 1.08998 * 109.47359 * 300.00160 * 1 2 3 27 27 H 1.09002 * 109.46950 * 60.00786 * 1 2 3 28 28 H 1.09002 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47359 * 239.99840 * 2 1 3 30 30 H 1.08998 * 109.47328 * 119.99500 * 2 1 3 31 31 H 0.97003 * 120.00283 * 180.02562 * 7 6 4 32 32 H 1.08001 * 119.93237 * 0.02562 * 16 15 12 33 33 H 1.08000 * 120.07154 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47344 * 0.02562 * 22 21 19 35 35 H 1.09003 * 109.46905 * 120.00272 * 22 21 19 36 36 H 1.09002 * 109.47747 * 240.00139 * 22 21 19 37 37 H 1.08999 * 109.47509 * 95.10016 * 23 21 19 38 38 H 1.08998 * 109.47204 * 215.10772 * 23 21 19 39 39 H 1.09007 * 109.46859 * 335.10347 * 23 21 19 40 40 H 1.08003 * 120.07346 * 179.72739 * 24 18 17 41 41 H 1.08013 * 119.92245 * 180.29290 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1816 2.0497 -1.1839 5 1 1.8819 3.0840 -1.2660 6 6 2.7324 1.3978 -2.2787 7 7 3.3738 0.2605 -2.1133 8 14 2.5634 2.1349 -3.9869 9 1 1.8035 3.4080 -3.9037 10 1 3.9128 2.3991 -4.5477 11 1 1.8391 1.1833 -4.8672 12 16 2.3727 2.1342 1.4316 13 8 3.2976 3.1681 1.1231 14 8 2.6445 1.1031 2.3708 15 6 0.9002 2.9314 1.9802 16 6 0.0111 2.2516 2.7936 17 6 -1.1434 2.8702 3.2270 18 6 -1.4137 4.1844 2.8428 19 6 -2.6492 4.8534 3.3031 20 8 -3.6130 4.1899 3.6325 21 7 -2.7051 6.1986 3.3628 22 6 -3.9618 6.8647 3.7137 23 6 -1.5091 6.9949 3.0767 24 6 -0.5154 4.8626 2.0174 25 6 0.6384 4.2345 1.5961 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 3.7590 -0.1948 -2.8783 32 1 0.2217 1.2348 3.0906 33 1 -1.8364 2.3386 3.8623 34 1 -4.7332 6.1152 3.8907 35 1 -3.8186 7.4584 4.6165 36 1 -4.2687 7.5161 2.8954 37 1 -1.5187 7.3022 2.0310 38 1 -1.4995 7.8783 3.7151 39 1 -0.6191 6.3963 3.2713 40 1 -0.7209 5.8782 1.7130 41 1 1.3367 4.7598 0.9612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282227463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:52 Heat of formation + Delta-G solvation = -48.665707 kcal Electronic energy + Delta-G solvation = -26296.798613 eV Core-core repulsion = 22498.350352 eV Total energy + Delta-G solvation = -3798.448261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.59066 -38.29553 -36.18506 -35.95320 -35.86202 -34.70029 -31.86975 -31.65762 -31.04072 -29.22423 -28.22065 -26.80092 -24.63131 -23.46194 -22.68204 -21.64261 -20.02819 -18.67683 -17.81318 -17.52116 -16.69758 -16.50932 -16.20290 -16.04529 -15.07233 -14.85762 -14.67173 -14.28942 -14.16891 -13.70568 -13.48812 -13.43222 -13.06256 -12.93564 -12.74549 -12.61628 -12.51374 -12.33003 -12.07084 -11.91053 -11.25786 -11.08820 -11.03630 -10.99180 -10.88696 -10.87381 -10.45137 -10.38925 -10.27336 -10.05200 -9.79331 -9.22859 -9.03789 -8.98589 -8.89735 -7.74285 -6.31048 -4.08437 0.52738 1.37795 1.46549 2.55852 2.69328 3.16963 3.25297 3.28497 3.62062 4.10552 4.23264 4.43850 4.59230 4.74688 4.81818 4.92658 4.98191 5.01115 5.04327 5.21375 5.24757 5.35890 5.40708 5.50744 5.64137 5.74232 6.00190 6.05940 6.07245 6.11149 6.24010 6.24515 6.34792 6.35908 6.60150 6.84696 6.92366 6.98897 7.28938 7.36248 7.74807 7.86889 8.37225 8.94611 9.33901 10.70770 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.003968 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.191777 B = 7054.923270 C = 7506.728261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.837 5.837 4 C -0.279 4.279 5 H 0.088 0.912 6 C 0.042 3.958 7 N -0.855 5.855 8 Si 0.919 3.081 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.280 1.280 12 S 2.620 3.380 13 O -0.968 6.968 14 O -0.995 6.995 15 C -0.626 4.626 16 C -0.033 4.033 17 C -0.085 4.085 18 C -0.101 4.101 19 C 0.560 3.440 20 O -0.534 6.534 21 N -0.618 5.618 22 C 0.080 3.920 23 C 0.061 3.939 24 C -0.130 4.130 25 C -0.029 4.029 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 10.109 6.811 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.669 5.669 4 C -0.417 4.417 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.495 5.495 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.206 1.206 12 S 2.717 3.283 13 O -0.958 6.958 14 O -0.985 6.985 15 C -0.708 4.708 16 C -0.052 4.052 17 C -0.105 4.105 18 C -0.105 4.105 19 C 0.349 3.651 20 O -0.411 6.411 21 N -0.351 5.351 22 C -0.062 4.062 23 C -0.082 4.082 24 C -0.149 4.149 25 C -0.048 4.048 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.166 0.834 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.766 9.708 7.509 15.685 hybrid contribution -0.766 0.668 -0.877 1.342 sum -10.532 10.376 6.632 16.204 Atomic orbital electron populations 1.22267 0.98773 1.00244 1.01331 1.21303 0.91286 0.83961 1.04510 1.52486 1.77051 1.20544 1.16776 1.19107 1.38262 0.97765 0.86532 0.89432 1.25521 0.94085 0.96615 1.00456 1.69923 1.31661 1.16503 1.31383 0.86012 0.78219 0.79232 0.82048 1.19168 1.20591 1.20612 1.05510 0.73850 0.74086 0.74876 1.93437 1.58498 1.59792 1.84069 1.93413 1.83437 1.56489 1.65143 1.31914 1.24012 1.06209 1.08710 1.20927 0.91752 0.99689 0.92793 1.21275 0.96910 0.93116 0.99166 1.19986 0.94634 0.95521 1.00317 1.18483 0.87689 0.81700 0.77222 1.90762 1.37679 1.64125 1.48548 1.47566 1.12029 1.05805 1.69729 1.21706 0.86184 0.98159 1.00149 1.22495 0.88092 0.96469 1.01100 1.22118 0.94088 1.00908 0.97742 1.20961 0.96056 0.92649 0.95106 0.94366 0.92237 0.93223 0.87086 0.92180 0.92108 0.83831 0.84506 0.89390 0.92090 0.92017 0.91594 0.91041 0.88884 0.83359 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.23 37.16 0.38 -2.69 16 2 C 0.12 2.56 5.99 -4.04 -0.02 2.53 16 3 N -0.84 -19.78 2.79 -59.91 -0.17 -19.95 16 4 C -0.28 -6.94 8.86 -15.06 -0.13 -7.08 16 5 H 0.09 2.08 7.88 -52.49 -0.41 1.67 16 6 C 0.04 1.04 5.09 -17.43 -0.09 0.95 16 7 N -0.86 -22.30 11.36 55.49 0.63 -21.67 16 8 Si 0.92 19.35 29.58 -169.99 -5.03 14.32 16 9 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 S 2.62 58.91 5.65 -107.50 -0.61 58.30 16 13 O -0.97 -24.09 16.48 -57.17 -0.94 -25.03 16 14 O -1.00 -23.73 15.83 -57.17 -0.91 -24.64 16 15 C -0.63 -11.49 5.98 -39.49 -0.24 -11.73 16 16 C -0.03 -0.54 8.23 -39.64 -0.33 -0.87 16 17 C -0.09 -1.29 9.59 -39.19 -0.38 -1.67 16 18 C -0.10 -1.46 5.51 -104.97 -0.58 -2.04 16 19 C 0.56 7.86 7.50 -12.33 -0.09 7.77 16 20 O -0.53 -8.99 15.93 5.32 0.08 -8.91 16 21 N -0.62 -6.51 3.27 -190.65 -0.62 -7.13 16 22 C 0.08 0.66 10.70 59.84 0.64 1.30 16 23 C 0.06 0.46 8.74 59.85 0.52 0.98 16 24 C -0.13 -1.74 7.54 -39.19 -0.30 -2.03 16 25 C -0.03 -0.46 9.50 -39.64 -0.38 -0.84 16 26 H 0.04 0.65 6.81 -51.93 -0.35 0.30 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 2.65 5.56 -51.93 -0.29 2.36 16 30 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.14 2.26 7.60 -52.49 -0.40 1.86 16 33 H 0.14 1.89 7.83 -52.49 -0.41 1.48 16 34 H 0.09 0.86 6.91 -51.93 -0.36 0.50 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.41 7.11 -51.93 -0.37 0.04 16 38 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 39 H 0.09 0.78 5.13 -51.93 -0.27 0.51 16 40 H 0.15 1.47 4.37 -52.48 -0.23 1.24 16 41 H 0.15 2.26 7.60 -52.48 -0.40 1.86 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -32.57 348.43 -8.39 -40.96 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.10 Total: 3.90 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -0.98 Total: -15.42 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.16 Total: -48.75 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -1.76 Total: -58.58 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 16 Polarization: 58.91 SS G_CDS: -0.61 Total: 58.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.57 -8.39 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282227463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.708 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds