Wall clock time and date at job start Fri Apr 10 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46940 * 2 1 4 4 C 1.36940 * 119.99891 * 273.32636 * 3 2 1 5 5 H 1.07999 * 120.00318 * 138.35316 * 4 3 2 6 6 C 1.38811 * 119.99776 * 318.35696 * 4 3 2 7 7 N 1.31616 * 120.00233 * 344.39686 * 6 4 3 8 8 Si 1.86803 * 119.99928 * 164.40358 * 6 4 3 9 9 H 1.48499 * 109.47272 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47191 * 119.99506 * 8 6 4 11 11 H 1.48498 * 109.47170 * 239.99549 * 8 6 4 12 12 S 1.65593 * 120.00211 * 93.32366 * 3 2 1 13 13 O 1.42109 * 106.40265 * 156.46076 * 12 3 2 14 14 O 1.42100 * 106.40279 * 23.54137 * 12 3 2 15 15 C 1.76198 * 107.22086 * 269.99918 * 12 3 2 16 16 C 1.38362 * 119.84961 * 89.99840 * 15 12 3 17 17 C 1.37959 * 120.14061 * 179.97438 * 16 15 12 18 18 C 1.39572 * 119.85671 * 0.02574 * 17 16 15 19 19 C 1.47847 * 120.14812 * 179.97438 * 18 17 16 20 20 O 1.21557 * 119.99780 * 336.36995 * 19 18 17 21 21 N 1.34773 * 120.00446 * 156.09033 * 19 18 17 22 22 C 1.46494 * 120.00066 * 175.02398 * 21 19 18 23 23 C 1.46499 * 119.99988 * 355.03013 * 21 19 18 24 24 C 1.39577 * 119.71061 * 0.24625 * 18 17 16 25 25 C 1.37956 * 119.84694 * 359.45654 * 24 18 17 26 26 H 1.08998 * 109.47359 * 300.00160 * 1 2 3 27 27 H 1.09002 * 109.46950 * 60.00786 * 1 2 3 28 28 H 1.09002 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47359 * 239.99840 * 2 1 3 30 30 H 1.08998 * 109.47328 * 119.99500 * 2 1 3 31 31 H 0.97003 * 120.00283 * 180.02562 * 7 6 4 32 32 H 1.08001 * 119.93237 * 0.02562 * 16 15 12 33 33 H 1.08000 * 120.07154 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47344 * 0.02562 * 22 21 19 35 35 H 1.09003 * 109.46905 * 120.00272 * 22 21 19 36 36 H 1.09002 * 109.47747 * 240.00139 * 22 21 19 37 37 H 1.08999 * 109.47509 * 95.10016 * 23 21 19 38 38 H 1.08998 * 109.47204 * 215.10772 * 23 21 19 39 39 H 1.09007 * 109.46859 * 335.10347 * 23 21 19 40 40 H 1.08003 * 120.07346 * 179.72739 * 24 18 17 41 41 H 1.08013 * 119.92245 * 180.29290 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1816 2.0497 -1.1839 5 1 1.8819 3.0840 -1.2660 6 6 2.7324 1.3978 -2.2787 7 7 3.3738 0.2605 -2.1133 8 14 2.5634 2.1349 -3.9869 9 1 1.8035 3.4080 -3.9037 10 1 3.9128 2.3991 -4.5477 11 1 1.8391 1.1833 -4.8672 12 16 2.3727 2.1342 1.4316 13 8 3.2976 3.1681 1.1231 14 8 2.6445 1.1031 2.3708 15 6 0.9002 2.9314 1.9802 16 6 0.0111 2.2516 2.7936 17 6 -1.1434 2.8702 3.2270 18 6 -1.4137 4.1844 2.8428 19 6 -2.6492 4.8534 3.3031 20 8 -3.6130 4.1899 3.6325 21 7 -2.7051 6.1986 3.3628 22 6 -3.9618 6.8647 3.7137 23 6 -1.5091 6.9949 3.0767 24 6 -0.5154 4.8626 2.0174 25 6 0.6384 4.2345 1.5961 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 3.7590 -0.1948 -2.8783 32 1 0.2217 1.2348 3.0906 33 1 -1.8364 2.3386 3.8623 34 1 -4.7332 6.1152 3.8907 35 1 -3.8186 7.4584 4.6165 36 1 -4.2687 7.5161 2.8954 37 1 -1.5187 7.3022 2.0310 38 1 -1.4995 7.8783 3.7151 39 1 -0.6191 6.3963 3.2713 40 1 -0.7209 5.8782 1.7130 41 1 1.3367 4.7598 0.9612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282227463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:51 Heat of formation + Delta-G solvation = -70.968312 kcal Electronic energy + Delta-G solvation = -26297.765727 eV Core-core repulsion = 22498.350352 eV Total energy + Delta-G solvation = -3799.415375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.64209 -39.46978 -38.03379 -37.65478 -36.87331 -36.57850 -33.61154 -32.90929 -32.26418 -30.92033 -28.93860 -27.69245 -26.47403 -24.61607 -23.87022 -23.33723 -21.04068 -20.41584 -19.41110 -18.62647 -18.26126 -18.02705 -17.56896 -16.98762 -16.62591 -16.35312 -15.94691 -15.64489 -15.34404 -15.19408 -14.77652 -14.56071 -14.39048 -14.20597 -14.06810 -13.88054 -13.64356 -13.39093 -13.27478 -13.04643 -12.97894 -12.84076 -12.79520 -12.70280 -12.55591 -12.16272 -12.12514 -11.95159 -11.87741 -11.54389 -11.18664 -10.84212 -10.47427 -10.11616 -9.79451 -9.57141 -8.16698 -6.00761 -0.74113 -0.24987 0.17301 1.43383 1.50916 1.53266 1.65018 1.85320 2.30184 2.47168 2.71346 2.95801 3.19297 3.27036 3.44388 3.75120 3.79929 4.09615 4.23349 4.30313 4.41840 4.43121 4.45995 4.46448 4.68922 4.72876 4.74653 4.80946 4.85964 4.86810 4.93454 4.98753 4.99531 5.05757 5.31241 5.36593 5.48899 5.61845 5.63325 5.95290 6.10400 6.50920 6.88331 7.09012 7.46541 8.85611 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.003968 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.191777 B = 7054.923270 C = 7506.728261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.850 5.850 4 C -0.300 4.300 5 H 0.094 0.906 6 C -0.004 4.004 7 N -0.893 5.893 8 Si 0.979 3.021 9 H -0.254 1.254 10 H -0.284 1.284 11 H -0.276 1.276 12 S 2.630 3.370 13 O -1.001 7.001 14 O -1.019 7.019 15 C -0.637 4.637 16 C -0.039 4.039 17 C -0.087 4.087 18 C -0.098 4.098 19 C 0.554 3.446 20 O -0.571 6.571 21 N -0.610 5.610 22 C 0.075 3.925 23 C 0.049 3.951 24 C -0.109 4.109 25 C -0.038 4.038 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.190 0.810 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 12.843 6.865 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.682 5.682 4 C -0.436 4.436 5 H 0.111 0.889 6 C -0.208 4.208 7 N -0.533 5.533 8 Si 0.803 3.197 9 H -0.178 1.178 10 H -0.210 1.210 11 H -0.201 1.201 12 S 2.732 3.268 13 O -0.991 6.991 14 O -1.008 7.008 15 C -0.725 4.725 16 C -0.058 4.058 17 C -0.106 4.106 18 C -0.101 4.101 19 C 0.343 3.657 20 O -0.451 6.451 21 N -0.341 5.341 22 C -0.066 4.066 23 C -0.092 4.092 24 C -0.127 4.127 25 C -0.057 4.057 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.207 0.793 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.756 12.450 7.525 18.704 hybrid contribution -0.229 -0.043 -0.717 0.754 sum -11.986 12.407 6.808 18.545 Atomic orbital electron populations 1.22155 0.95939 1.01992 1.01520 1.21313 0.93653 0.83366 1.03195 1.52573 1.77619 1.21030 1.16939 1.19391 1.38682 0.98124 0.87390 0.88884 1.26324 0.93698 0.96964 1.03825 1.70036 1.33015 1.17963 1.32293 0.85092 0.77924 0.79022 0.77688 1.17785 1.21044 1.20135 1.04444 0.74709 0.73489 0.74150 1.93390 1.60913 1.60253 1.84510 1.93378 1.84657 1.57594 1.65216 1.31166 1.22737 1.07438 1.11208 1.20964 0.92076 0.99944 0.92851 1.21410 0.96360 0.93756 0.99107 1.20240 0.94959 0.95303 0.99601 1.18426 0.86870 0.82945 0.77499 1.90752 1.38634 1.65235 1.50509 1.47730 1.13716 1.04828 1.67852 1.21907 0.84655 0.97854 1.02190 1.22756 0.86350 0.96885 1.03251 1.22484 0.92144 1.02204 0.95915 1.21150 0.97308 0.91879 0.95345 0.93289 0.92815 0.90712 0.89152 0.92723 0.92093 0.83656 0.83384 0.91407 0.89834 0.89608 0.89326 0.88142 0.89690 0.79350 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 10.23 71.98 0.74 -4.99 16 2 C 0.11 5.02 5.99 86.38 0.52 5.54 16 3 N -0.85 -41.07 2.79 -343.45 -0.96 -42.03 16 4 C -0.30 -15.13 8.86 84.03 0.74 -14.38 16 5 H 0.09 4.44 7.88 -2.91 -0.02 4.42 16 6 C 0.00 -0.18 5.09 84.86 0.43 0.25 16 7 N -0.89 -47.95 11.36 21.65 0.25 -47.70 16 8 Si 0.98 39.74 29.58 68.60 2.03 41.77 16 9 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 12 S 2.63 120.81 5.65 -56.49 -0.32 120.49 16 13 O -1.00 -50.93 16.48 -128.00 -2.11 -53.03 16 14 O -1.02 -49.98 15.83 -128.00 -2.03 -52.01 16 15 C -0.64 -23.10 5.98 22.33 0.13 -22.96 16 16 C -0.04 -1.27 8.23 22.23 0.18 -1.09 16 17 C -0.09 -2.50 9.59 22.53 0.22 -2.29 16 18 C -0.10 -2.58 5.51 -20.09 -0.11 -2.69 16 19 C 0.55 14.16 7.50 86.79 0.65 14.81 16 20 O -0.57 -18.41 15.93 -3.90 -0.06 -18.48 16 21 N -0.61 -10.57 3.27 -875.35 -2.87 -13.43 16 22 C 0.08 0.97 10.70 127.77 1.37 2.34 16 23 C 0.05 0.50 8.74 127.77 1.12 1.61 16 24 C -0.11 -2.58 7.54 22.53 0.17 -2.41 16 25 C -0.04 -1.15 9.50 22.23 0.21 -0.94 16 26 H 0.05 1.65 6.81 -2.39 -0.02 1.64 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 4.48 5.56 -2.39 -0.01 4.47 16 30 H 0.05 2.45 6.95 -2.39 -0.02 2.43 16 31 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.15 4.57 7.60 -2.91 -0.02 4.55 16 33 H 0.15 3.90 7.83 -2.91 -0.02 3.88 16 34 H 0.07 1.19 6.91 -2.39 -0.02 1.18 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.59 7.11 -2.39 -0.02 0.57 16 38 H 0.10 0.54 8.11 -2.39 -0.02 0.52 16 39 H 0.08 1.06 5.13 -2.38 -0.01 1.04 16 40 H 0.19 2.85 4.37 -2.91 -0.01 2.84 16 41 H 0.15 4.44 7.60 -2.90 -0.02 4.42 16 Total: -1.00 -72.58 348.43 1.36 -71.22 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.06 Total: 20.40 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 6.37 Total: -27.20 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -3.58 Total: -103.16 kcal Atomic # 8 Polarization: -119.32 SS G_CDS: -4.20 Total: -123.52 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: 120.81 SS G_CDS: -0.32 Total: 120.49 kcal Total: -72.58 1.36 -71.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282227463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.253 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds