Wall clock time and date at job start Fri Apr 10 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99743 * 2 1 4 4 C 1.52998 * 109.46898 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46810 * 65.00643 * 4 3 2 6 6 C 1.35680 * 117.00002 * 179.97438 * 5 4 3 7 7 N 1.32280 * 119.68142 * 359.97438 * 6 5 4 8 8 C 1.31928 * 121.64528 * 179.97438 * 7 6 5 9 9 C 1.38098 * 120.83620 * 359.97438 * 8 7 6 10 10 C 1.38789 * 119.28372 * 0.02562 * 9 8 7 11 11 C 1.38425 * 118.48482 * 0.25114 * 10 9 8 12 12 C 1.50700 * 120.43991 * 179.72329 * 11 10 9 13 13 N 1.46495 * 109.47403 * 259.99982 * 12 11 10 14 14 C 1.34771 * 120.00080 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00292 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00098 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47148 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99987 * 179.97438 * 17 16 14 19 19 H 1.08007 * 120.00009 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00346 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99759 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00440 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46901 * 90.00318 * 22 20 18 24 24 H 1.48495 * 109.47288 * 210.00228 * 22 20 18 25 25 H 1.48501 * 109.47213 * 330.00795 * 22 20 18 26 26 H 1.09005 * 109.46868 * 299.99147 * 1 2 3 27 27 H 1.08997 * 109.47540 * 59.99785 * 1 2 3 28 28 H 1.09004 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46804 * 60.00431 * 3 2 1 30 30 H 1.08997 * 109.47531 * 300.00258 * 3 2 1 31 31 H 1.08989 * 109.47637 * 305.00456 * 4 3 2 32 32 H 1.09002 * 109.47017 * 185.00043 * 4 3 2 33 33 H 1.08003 * 119.58577 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.35816 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.75296 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47195 * 20.00072 * 12 11 10 37 37 H 1.09003 * 109.46920 * 139.99851 * 12 11 10 38 38 H 0.97001 * 119.99802 * 359.97438 * 13 12 11 39 39 H 1.09002 * 109.47100 * 299.99899 * 16 14 13 40 40 H 1.09003 * 109.47090 * 59.99724 * 16 14 13 41 41 H 0.97006 * 119.99957 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2221 6 6 5.2997 0.3992 -1.3841 7 7 6.1328 0.7805 -0.4300 8 6 7.4375 0.6230 -0.5466 9 6 7.9829 0.0493 -1.6782 10 6 7.1423 -0.3642 -2.7022 11 6 5.7786 -0.1798 -2.5520 12 6 4.8261 -0.6067 -3.6390 13 7 4.4356 0.5612 -4.4325 14 6 3.5831 0.4188 -5.4666 15 8 3.1396 -0.6763 -5.7406 16 6 3.1809 1.6203 -6.2826 17 16 2.0370 1.1074 -7.5882 18 6 1.7396 2.6620 -8.3624 19 1 2.2211 3.5531 -7.9873 20 6 0.8873 2.7415 -9.4549 21 7 0.3007 1.6555 -9.9124 22 14 0.5713 4.3897 -10.2753 23 1 1.5699 4.6056 -11.3531 24 1 -0.7949 4.3993 -10.8571 25 1 0.6880 5.4745 -9.2679 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8515 0.5683 0.8408 32 1 3.9785 2.1766 0.0889 33 1 8.0872 0.9461 0.2534 34 1 9.0520 -0.0763 -1.7653 35 1 7.5433 -0.8154 -3.5978 36 1 5.3146 -1.3372 -4.2838 37 1 3.9393 -1.0539 -3.1899 38 1 4.7900 1.4371 -4.2132 39 1 2.6926 2.3507 -5.6374 40 1 4.0675 2.0677 -6.7319 41 1 -0.2953 1.7111 -10.6758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298498624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:05 Heat of formation + Delta-G solvation = -83.347938 kcal Electronic energy + Delta-G solvation = -24559.969681 eV Core-core repulsion = 20760.017485 eV Total energy + Delta-G solvation = -3799.952196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04156 -38.98437 -38.61424 -37.50017 -35.07619 -32.59365 -32.40425 -31.69468 -30.25017 -29.13390 -26.54795 -26.10320 -25.38706 -24.18189 -22.58376 -22.10653 -20.30709 -18.79661 -17.88989 -17.32687 -17.10278 -16.46099 -16.13129 -16.02255 -15.57844 -15.37334 -15.29848 -14.94417 -14.78534 -14.28364 -13.93396 -13.71749 -13.50585 -13.33715 -13.08537 -12.90842 -12.62753 -12.55550 -12.07333 -11.81198 -11.71335 -11.55823 -11.16041 -11.04807 -11.00173 -10.75332 -10.22559 -10.00462 -9.87084 -9.78679 -9.37885 -9.04857 -8.80363 -8.67431 -8.19773 -6.46653 -6.19459 -3.89482 0.74698 0.98854 2.73697 3.08656 3.18723 3.23494 3.28775 3.32372 3.47749 3.50570 3.90016 3.97541 4.22640 4.51118 4.55516 4.65418 4.67451 4.82424 4.90993 5.04952 5.14571 5.15502 5.17475 5.18371 5.24250 5.25420 5.42454 5.48481 5.54502 5.66255 5.77373 5.88684 5.92517 6.00427 6.13747 6.18639 6.66985 6.86227 7.01228 7.52402 7.61626 7.79609 8.37398 8.69353 9.25749 10.87944 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.002907 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.558863 B = 9630.117544 C =11023.979783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.059 3.941 4 C 0.074 3.926 5 O -0.287 6.287 6 C 0.339 3.661 7 N -0.544 5.544 8 C 0.143 3.857 9 C -0.215 4.215 10 C -0.023 4.023 11 C -0.174 4.174 12 C 0.177 3.823 13 N -0.731 5.731 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.152 4.152 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.492 -0.325 23.146 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.018 4.018 4 C -0.001 4.001 5 O -0.193 6.193 6 C 0.160 3.840 7 N -0.268 5.268 8 C -0.013 4.013 9 C -0.235 4.235 10 C -0.049 4.049 11 C -0.177 4.177 12 C 0.052 3.948 13 N -0.385 5.385 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.117 -2.101 23.136 25.754 hybrid contribution 0.758 2.748 -0.531 2.900 sum 11.875 0.647 22.605 25.543 Atomic orbital electron populations 1.22779 0.80555 1.03135 1.00108 1.87951 1.20077 1.26922 1.95439 1.22638 0.91547 0.86032 1.01584 1.22679 0.92922 0.98715 0.85780 1.86401 1.17261 1.75789 1.39807 1.19702 0.84298 0.90482 0.89524 1.67399 1.05625 1.23239 1.30551 1.22448 0.89590 0.92757 0.96522 1.21990 1.01442 1.04456 0.95640 1.21464 0.91281 0.93691 0.98488 1.19982 0.95152 1.06627 0.95976 1.19869 0.96710 0.88514 0.89669 1.45990 1.49225 1.10703 1.32586 1.20269 0.77592 0.90629 0.79603 1.90701 1.53107 1.27261 1.68126 1.23523 1.05220 0.98794 1.02724 1.85392 1.54000 1.13610 1.30258 1.22878 1.33016 0.94292 1.18163 0.90981 1.24988 0.94909 0.97645 0.96051 1.70025 1.28372 1.27656 1.24247 0.86175 0.77734 0.82288 0.79335 1.20280 1.20770 1.19725 0.94202 0.93491 0.89407 0.91076 0.91835 0.90730 0.90014 0.82357 0.84367 0.83799 0.90671 0.90071 0.77056 0.89340 0.89319 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.66 10.67 -40.08 -0.43 -5.09 16 3 C 0.06 0.56 6.32 37.16 0.23 0.80 16 4 C 0.07 0.75 5.69 37.16 0.21 0.96 16 5 O -0.29 -3.67 9.33 -23.60 -0.22 -3.89 16 6 C 0.34 4.03 7.47 -17.12 -0.13 3.90 16 7 N -0.54 -5.79 9.22 -13.33 -0.12 -5.91 16 8 C 0.14 1.14 11.18 -17.56 -0.20 0.94 16 9 C -0.21 -1.54 10.11 -39.43 -0.40 -1.94 16 10 C -0.02 -0.20 9.81 -39.31 -0.39 -0.59 16 11 C -0.17 -1.93 5.28 -104.32 -0.55 -2.48 16 12 C 0.18 2.35 5.49 -5.20 -0.03 2.32 16 13 N -0.73 -10.72 5.55 -61.47 -0.34 -11.06 16 14 C 0.53 10.39 7.85 -10.99 -0.09 10.30 16 15 O -0.52 -12.15 15.86 5.56 0.09 -12.06 16 16 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.75 8.10 -51.94 -0.42 0.33 16 32 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 37 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 38 H 0.40 4.92 8.46 -40.82 -0.35 4.58 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -36.65 374.49 -7.46 -44.11 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.78 Total: 1.63 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.20 Total: -0.42 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.27 Total: -42.59 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.56 Total: -21.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.65 -7.46 -44.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298498624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.235 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds