Wall clock time and date at job start Fri Apr 10 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47309 * 300.00800 * 3 2 1 6 6 H 1.48503 * 109.47011 * 60.00178 * 3 2 1 7 7 C 1.37881 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99132 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47530 * 180.02562 * 9 7 2 11 11 C 1.36615 * 125.84301 * 274.97700 * 10 9 7 12 12 C 1.34797 * 109.01542 * 179.76230 * 11 10 9 13 13 C 1.41426 * 108.25264 * 0.40392 * 12 11 10 14 14 N 1.32592 * 126.40669 * 179.86073 * 13 12 11 15 15 C 1.34466 * 119.99642 * 5.40309 * 14 13 12 16 16 O 1.35345 * 120.00168 * 174.47136 * 15 14 13 17 17 N 1.30897 * 120.00059 * 354.47900 * 15 14 13 18 18 C 1.46502 * 119.99718 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47379 * 114.99856 * 18 17 15 20 20 O 1.42903 * 109.60663 * 64.29280 * 19 18 17 21 21 C 1.53852 * 109.61314 * 184.63202 * 19 18 17 22 22 C 1.55044 * 106.95008 * 167.33235 * 21 19 18 23 23 S 1.83460 * 102.08649 * 317.64339 * 22 21 19 24 24 C 1.54273 * 109.61043 * 303.95875 * 19 18 17 25 25 N 1.37664 * 107.19383 * 359.60023 * 13 12 11 26 26 H 0.96996 * 126.38981 * 180.25970 * 25 13 12 27 27 H 0.96994 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47137 * 60.00310 * 9 7 2 29 29 H 1.09000 * 109.46865 * 300.00640 * 9 7 2 30 30 H 1.08011 * 125.49672 * 0.05721 * 11 10 9 31 31 H 1.07994 * 125.87806 * 180.24372 * 12 11 10 32 32 H 0.96700 * 114.00241 * 0.02562 * 16 15 14 33 33 H 1.08998 * 109.47764 * 354.99353 * 18 17 15 34 34 H 1.09009 * 109.47045 * 234.99502 * 18 17 15 35 35 H 0.96699 * 114.00429 * 300.70371 * 20 19 18 36 36 H 1.08998 * 109.97994 * 286.53437 * 21 19 18 37 37 H 1.09005 * 109.97393 * 47.81342 * 21 19 18 38 38 H 1.08996 * 110.81407 * 199.55144 * 22 21 19 39 39 H 1.09002 * 111.18644 * 75.90454 * 22 21 19 40 40 H 1.08997 * 110.39773 * 330.91893 * 24 19 18 41 41 H 1.09004 * 110.39866 * 93.21299 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7960 -4.1583 -1.1038 12 6 3.6126 -5.1575 -0.7146 13 6 3.5378 -5.2678 0.6934 14 7 4.1936 -6.1364 1.4507 15 6 5.1080 -6.9534 0.8988 16 8 5.8569 -7.7608 1.6857 17 7 5.2741 -6.9677 -0.3995 18 6 6.2707 -7.8574 -1.0007 19 6 5.5652 -8.9012 -1.8688 20 8 4.9106 -8.2530 -2.9612 21 6 6.5969 -9.9069 -2.4083 22 6 5.8004 -11.1005 -2.9955 23 16 4.4944 -11.3498 -1.7314 24 6 4.5256 -9.6628 -1.0206 25 7 2.6613 -4.3009 1.1313 26 1 2.4081 -4.1278 2.0515 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8903 29 1 0.6248 -2.5570 0.8896 30 1 2.6395 -3.8373 -2.1232 31 1 4.2179 -5.7704 -1.3660 32 1 5.6628 -7.6802 2.6296 33 1 6.8320 -8.3596 -0.2127 34 1 6.9539 -7.2735 -1.6177 35 1 4.2496 -7.6003 -2.6925 36 1 7.1963 -9.4419 -3.1910 37 1 7.2417 -10.2492 -1.5989 38 1 6.4328 -11.9842 -3.0796 39 1 5.3626 -10.8453 -3.9606 40 1 4.8377 -9.6959 0.0232 41 1 3.5459 -9.1932 -1.1087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331040407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:13 Heat of formation + Delta-G solvation = 33.615052 kcal Electronic energy + Delta-G solvation = -25371.548714 eV Core-core repulsion = 21608.961165 eV Total energy + Delta-G solvation = -3762.587549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80447 -39.01484 -37.92972 -35.13263 -33.70740 -33.45932 -32.64853 -31.18889 -30.77251 -29.00773 -26.98082 -26.33102 -23.76564 -23.15844 -21.74145 -21.13408 -20.22352 -20.08428 -17.93863 -17.02724 -16.93800 -16.72105 -16.30171 -15.82606 -15.02901 -14.93317 -14.68354 -14.55785 -14.34400 -14.13264 -13.83337 -13.45865 -13.26878 -12.90862 -12.80803 -12.64656 -12.42525 -12.16046 -11.95296 -11.83733 -11.62234 -11.46679 -11.11803 -10.93907 -10.77292 -10.57280 -10.51408 -9.92279 -9.72188 -9.34227 -9.13849 -8.96875 -8.70079 -8.34191 -7.70079 -6.84003 -6.51474 -4.69861 1.59953 1.82601 2.00207 2.36459 2.94131 3.01462 3.11457 3.15891 3.89554 4.04106 4.10495 4.25475 4.46119 4.51045 4.60825 4.77511 4.82811 5.05685 5.17771 5.34944 5.38447 5.41568 5.53599 5.64677 5.68259 5.81007 5.87490 5.98699 6.01626 6.09830 6.16487 6.49621 6.51851 6.78532 7.21524 7.34466 7.46984 7.55843 7.68023 7.79140 8.00941 8.39375 8.59427 8.90991 9.01153 10.48484 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.002552 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.273976 B =10969.007195 C =11246.093045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.254 3.746 10 N -0.343 5.343 11 C 0.157 3.843 12 C -0.322 4.322 13 C 0.477 3.523 14 N -0.681 5.681 15 C 0.554 3.446 16 O -0.512 6.512 17 N -0.639 5.639 18 C 0.045 3.955 19 C 0.137 3.863 20 O -0.552 6.552 21 C -0.115 4.115 22 C -0.063 4.063 23 S -0.311 6.311 24 C -0.078 4.078 25 N -0.472 5.472 26 H 0.444 0.556 27 H 0.272 0.728 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.186 0.814 31 H 0.199 0.801 32 H 0.396 0.604 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.387 0.613 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -13.328 -2.270 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.138 3.862 10 N -0.129 5.129 11 C 0.012 3.988 12 C -0.355 4.355 13 C 0.224 3.776 14 N -0.437 5.437 15 C 0.240 3.760 16 O -0.305 6.305 17 N -0.393 5.393 18 C -0.089 4.089 19 C 0.094 3.906 20 O -0.360 6.360 21 C -0.154 4.154 22 C -0.211 4.211 23 S -0.085 6.085 24 C -0.226 4.226 25 N -0.194 5.194 26 H 0.291 0.709 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.203 0.797 31 H 0.215 0.785 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.963 -14.280 -2.444 16.074 hybrid contribution 0.844 2.114 1.024 2.496 sum 7.808 -12.165 -1.421 14.525 Atomic orbital electron populations 1.69903 1.06145 1.28233 1.48014 1.24960 0.95008 0.99765 0.93805 0.86249 0.80042 0.82061 0.78104 1.19389 1.20365 1.20538 1.21439 0.94093 0.89497 1.54530 0.91170 1.20053 0.85646 0.79855 1.00664 1.48085 1.39815 1.28721 0.96260 1.22912 0.91489 0.92282 0.92072 1.22801 1.10885 1.07111 0.94725 1.18650 0.84501 0.84461 0.90008 1.68232 1.22043 1.18946 1.34455 1.21212 0.84764 0.84786 0.85246 1.85042 1.60498 1.61309 1.23611 1.73791 1.29306 1.31502 1.04709 1.22129 0.95135 0.94311 0.97280 1.22030 0.90388 0.91987 0.86208 1.86382 1.58167 1.58642 1.32814 1.22491 0.97548 0.93677 1.01660 1.24138 0.96700 1.00846 0.99401 1.87430 1.54919 1.20905 1.45245 1.24682 1.03409 0.92195 1.02359 1.44489 1.42373 1.28936 1.03590 0.70930 0.91867 0.91377 0.93185 0.79684 0.78487 0.74978 0.93043 0.91211 0.76353 0.89036 0.89304 0.88362 0.88779 0.88667 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.02 13.29 55.43 0.74 -21.29 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 18.82 29.54 -169.99 -5.02 13.80 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.56 -12.78 9.39 -34.44 -0.32 -13.10 16 8 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.25 5.03 6.19 -5.20 -0.03 5.00 16 10 N -0.34 -5.83 3.64 -62.25 -0.23 -6.05 16 11 C 0.16 2.35 11.45 -16.64 -0.19 2.16 16 12 C -0.32 -4.98 9.47 -39.59 -0.37 -5.36 16 13 C 0.48 7.97 8.07 -155.27 -1.25 6.72 16 14 N -0.68 -11.39 10.52 -13.63 -0.14 -11.54 16 15 C 0.55 8.86 8.56 -90.57 -0.78 8.08 16 16 O -0.51 -7.10 12.03 -17.73 -0.21 -7.32 16 17 N -0.64 -9.70 5.49 -63.05 -0.35 -10.05 16 18 C 0.05 0.61 5.37 -4.04 -0.02 0.59 16 19 C 0.14 1.71 0.91 -89.51 -0.08 1.63 16 20 O -0.55 -7.26 12.86 -35.23 -0.45 -7.71 16 21 C -0.11 -1.21 5.45 -25.21 -0.14 -1.35 16 22 C -0.06 -0.66 7.28 38.24 0.28 -0.38 16 23 S -0.31 -4.11 23.26 -107.50 -2.50 -6.61 16 24 C -0.08 -1.04 5.99 37.82 0.23 -0.82 16 25 N -0.47 -7.60 7.39 31.36 0.23 -7.37 16 26 H 0.44 6.37 8.96 -182.55 -1.64 4.74 16 27 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.19 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.20 2.97 4.96 -52.49 -0.26 2.71 16 32 H 0.40 4.15 8.98 45.56 0.41 4.56 16 33 H 0.05 0.72 6.74 -51.93 -0.35 0.37 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 35 H 0.39 4.72 8.07 45.56 0.37 5.09 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.36 7.86 -51.93 -0.41 0.95 16 41 H 0.10 1.39 8.04 -51.93 -0.42 0.97 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -26.93 357.65 -10.55 -37.48 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -5.22 Total: 16.53 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.78 Total: 4.73 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.25 Total: -56.30 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.67 Total: -15.03 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.50 Total: -6.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.93 -10.55 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331040407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.096 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds