Wall clock time and date at job start Fri Apr 10 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47309 * 300.00800 * 3 2 1 6 6 H 1.48503 * 109.47011 * 60.00178 * 3 2 1 7 7 C 1.37881 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99132 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47530 * 180.02562 * 9 7 2 11 11 C 1.36615 * 125.84301 * 274.97700 * 10 9 7 12 12 C 1.34797 * 109.01542 * 179.76230 * 11 10 9 13 13 C 1.41426 * 108.25264 * 0.40392 * 12 11 10 14 14 N 1.32592 * 126.40669 * 179.86073 * 13 12 11 15 15 C 1.34466 * 119.99642 * 5.40309 * 14 13 12 16 16 O 1.35345 * 120.00168 * 174.47136 * 15 14 13 17 17 N 1.30897 * 120.00059 * 354.47900 * 15 14 13 18 18 C 1.46502 * 119.99718 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47379 * 114.99856 * 18 17 15 20 20 O 1.42903 * 109.60663 * 64.29280 * 19 18 17 21 21 C 1.53852 * 109.61314 * 184.63202 * 19 18 17 22 22 C 1.55044 * 106.95008 * 167.33235 * 21 19 18 23 23 S 1.83460 * 102.08649 * 317.64339 * 22 21 19 24 24 C 1.54273 * 109.61043 * 303.95875 * 19 18 17 25 25 N 1.37664 * 107.19383 * 359.60023 * 13 12 11 26 26 H 0.96996 * 126.38981 * 180.25970 * 25 13 12 27 27 H 0.96994 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47137 * 60.00310 * 9 7 2 29 29 H 1.09000 * 109.46865 * 300.00640 * 9 7 2 30 30 H 1.08011 * 125.49672 * 0.05721 * 11 10 9 31 31 H 1.07994 * 125.87806 * 180.24372 * 12 11 10 32 32 H 0.96700 * 114.00241 * 0.02562 * 16 15 14 33 33 H 1.08998 * 109.47764 * 354.99353 * 18 17 15 34 34 H 1.09009 * 109.47045 * 234.99502 * 18 17 15 35 35 H 0.96699 * 114.00429 * 300.70371 * 20 19 18 36 36 H 1.08998 * 109.97994 * 286.53437 * 21 19 18 37 37 H 1.09005 * 109.97393 * 47.81342 * 21 19 18 38 38 H 1.08996 * 110.81407 * 199.55144 * 22 21 19 39 39 H 1.09002 * 111.18644 * 75.90454 * 22 21 19 40 40 H 1.08997 * 110.39773 * 330.91893 * 24 19 18 41 41 H 1.09004 * 110.39866 * 93.21299 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7960 -4.1583 -1.1038 12 6 3.6126 -5.1575 -0.7146 13 6 3.5378 -5.2678 0.6934 14 7 4.1936 -6.1364 1.4507 15 6 5.1080 -6.9534 0.8988 16 8 5.8569 -7.7608 1.6857 17 7 5.2741 -6.9677 -0.3995 18 6 6.2707 -7.8574 -1.0007 19 6 5.5652 -8.9012 -1.8688 20 8 4.9106 -8.2530 -2.9612 21 6 6.5969 -9.9069 -2.4083 22 6 5.8004 -11.1005 -2.9955 23 16 4.4944 -11.3498 -1.7314 24 6 4.5256 -9.6628 -1.0206 25 7 2.6613 -4.3009 1.1313 26 1 2.4081 -4.1278 2.0515 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8903 29 1 0.6248 -2.5570 0.8896 30 1 2.6395 -3.8373 -2.1232 31 1 4.2179 -5.7704 -1.3660 32 1 5.6628 -7.6802 2.6296 33 1 6.8320 -8.3596 -0.2127 34 1 6.9539 -7.2735 -1.6177 35 1 4.2496 -7.6003 -2.6925 36 1 7.1963 -9.4419 -3.1910 37 1 7.2417 -10.2492 -1.5989 38 1 6.4328 -11.9842 -3.0796 39 1 5.3626 -10.8453 -3.9606 40 1 4.8377 -9.6959 0.0232 41 1 3.5459 -9.1932 -1.1087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331040407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:12 Heat of formation + Delta-G solvation = 13.600008 kcal Electronic energy + Delta-G solvation = -25372.416631 eV Core-core repulsion = 21608.961165 eV Total energy + Delta-G solvation = -3763.455466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07288 -40.11343 -39.00947 -36.44944 -35.26527 -34.49648 -33.84003 -32.42497 -32.21427 -30.05140 -28.45344 -27.51682 -25.09955 -24.38665 -22.99407 -22.33631 -21.34900 -21.16489 -19.25515 -18.73015 -18.00380 -17.74779 -17.57013 -17.00646 -16.57155 -16.20223 -15.78274 -15.62820 -15.56984 -15.27219 -14.97818 -14.66814 -14.46774 -14.29967 -14.02428 -13.89503 -13.64369 -13.38861 -13.12036 -13.01855 -12.87196 -12.73497 -12.46934 -12.31364 -12.20611 -11.94906 -11.54881 -11.41107 -10.82954 -10.76452 -10.55911 -10.38814 -9.88647 -9.56927 -8.74923 -8.44556 -7.97850 -6.53306 0.34534 0.70747 0.84639 1.37787 1.40081 1.43583 1.52633 1.72978 2.31947 2.69591 2.88981 2.96788 3.22031 3.36622 3.51574 3.64515 3.87872 4.01846 4.16949 4.22850 4.31995 4.43575 4.53411 4.61794 4.64540 4.72763 4.77835 4.85826 4.91467 4.97158 5.04622 5.08616 5.15987 5.49293 5.57725 5.74767 6.06671 6.27352 6.38446 6.61303 6.78135 6.83331 7.20686 7.41676 7.67257 8.68568 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.002552 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.273976 B =10969.007195 C =11246.093045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.561 4.561 8 H 0.060 0.940 9 C 0.269 3.731 10 N -0.355 5.355 11 C 0.163 3.837 12 C -0.322 4.322 13 C 0.464 3.536 14 N -0.690 5.690 15 C 0.542 3.458 16 O -0.511 6.511 17 N -0.641 5.641 18 C 0.049 3.951 19 C 0.141 3.859 20 O -0.557 6.557 21 C -0.113 4.113 22 C -0.050 4.050 23 S -0.347 6.347 24 C -0.067 4.067 25 N -0.474 5.474 26 H 0.448 0.552 27 H 0.273 0.727 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.217 0.783 31 H 0.204 0.796 32 H 0.410 0.590 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.389 0.611 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 -13.774 -3.236 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.599 4.599 8 H 0.078 0.922 9 C 0.151 3.849 10 N -0.141 5.141 11 C 0.019 3.981 12 C -0.355 4.355 13 C 0.211 3.789 14 N -0.446 5.446 15 C 0.227 3.773 16 O -0.306 6.306 17 N -0.394 5.394 18 C -0.085 4.085 19 C 0.098 3.902 20 O -0.365 6.365 21 C -0.151 4.151 22 C -0.198 4.198 23 S -0.121 6.121 24 C -0.216 4.216 25 N -0.196 5.196 26 H 0.296 0.704 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.233 0.767 31 H 0.220 0.780 32 H 0.266 0.734 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.239 0.761 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.300 -14.758 -3.408 17.272 hybrid contribution 0.509 2.144 1.336 2.577 sum 8.809 -12.614 -2.072 15.525 Atomic orbital electron populations 1.69970 1.07142 1.28834 1.49339 1.25597 0.95591 1.02361 0.93816 0.85430 0.78730 0.79114 0.77964 1.19619 1.19998 1.20632 1.21651 0.93743 0.90949 1.53554 0.92206 1.19637 0.85573 0.79639 1.00021 1.47820 1.40319 1.28854 0.97092 1.23437 0.90367 0.91488 0.92771 1.22876 1.11012 1.07293 0.94283 1.18880 0.84679 0.84630 0.90735 1.68217 1.22298 1.19125 1.34951 1.21288 0.85074 0.85154 0.85819 1.85009 1.60064 1.60776 1.24702 1.73704 1.29431 1.31614 1.04682 1.22135 0.94840 0.94296 0.97198 1.22063 0.90394 0.91893 0.85879 1.86380 1.58291 1.58780 1.33081 1.22526 0.97088 0.93109 1.02419 1.24238 0.95613 1.01853 0.98047 1.87561 1.56806 1.21026 1.46725 1.24526 1.02893 0.92291 1.01876 1.44476 1.42526 1.28942 1.03693 0.70412 0.91808 0.91387 0.94318 0.76685 0.78006 0.73391 0.93420 0.91097 0.76089 0.87595 0.88310 0.85910 0.88726 0.89864 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.33 13.29 21.45 0.28 -45.05 16 2 C 0.03 1.34 5.46 84.65 0.46 1.80 16 3 Si 0.96 38.19 29.54 68.60 2.03 40.22 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.56 -25.45 9.39 25.60 0.24 -25.21 16 8 H 0.06 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.27 10.58 6.19 85.63 0.53 11.11 16 10 N -0.35 -11.80 3.64 -350.85 -1.28 -13.08 16 11 C 0.16 4.61 11.45 83.16 0.95 5.56 16 12 C -0.32 -9.60 9.47 22.26 0.21 -9.39 16 13 C 0.46 15.24 8.07 134.03 1.08 16.32 16 14 N -0.69 -22.73 10.52 -308.93 -3.25 -25.98 16 15 C 0.54 16.90 8.56 180.33 1.54 18.44 16 16 O -0.51 -13.74 12.03 -86.35 -1.04 -14.77 16 17 N -0.64 -18.82 5.49 -467.10 -2.56 -21.39 16 18 C 0.05 1.26 5.37 86.38 0.46 1.72 16 19 C 0.14 3.29 0.91 -10.08 -0.01 3.28 16 20 O -0.56 -13.75 12.86 -148.98 -1.92 -15.67 16 21 C -0.11 -2.09 5.45 31.58 0.17 -1.91 16 22 C -0.05 -0.93 7.28 72.68 0.53 -0.40 16 23 S -0.35 -8.82 23.26 -56.49 -1.31 -10.13 16 24 C -0.07 -1.76 5.99 72.41 0.43 -1.33 16 25 N -0.47 -15.10 7.39 -54.68 -0.40 -15.50 16 26 H 0.45 12.90 8.96 -213.28 -1.91 10.99 16 27 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 28 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.22 4.55 8.06 -2.90 -0.02 4.53 16 31 H 0.20 5.83 4.96 -2.91 -0.01 5.81 16 32 H 0.41 8.23 8.98 -74.06 -0.67 7.57 16 33 H 0.05 1.27 6.74 -2.39 -0.02 1.26 16 34 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.39 9.05 8.07 -74.06 -0.60 8.45 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.66 8.10 -2.38 -0.02 1.64 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 41 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 Total: -1.00 -55.83 357.65 -4.92 -60.74 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -2.07 Total: 40.60 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.61 Total: 20.00 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -7.21 Total: -120.99 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -2.96 Total: -30.44 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.31 Total: -10.13 kcal Total: -55.83 -4.92 -60.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331040407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.345 kcal (2) G-P(sol) polarization free energy of solvation -55.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds