Wall clock time and date at job start Fri Apr 10 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47512 * 2 1 4 4 C 1.53006 * 109.47153 * 120.00365 * 2 1 3 5 5 C 1.52997 * 109.46961 * 184.99756 * 4 2 1 6 6 N 1.46499 * 109.47032 * 179.97438 * 5 4 2 7 7 S 1.65601 * 120.00091 * 165.00117 * 6 5 4 8 8 O 1.42100 * 106.40118 * 311.45889 * 7 6 5 9 9 O 1.42104 * 106.40248 * 178.54451 * 7 6 5 10 10 C 1.76197 * 107.22017 * 64.99919 * 7 6 5 11 11 C 1.38238 * 119.99975 * 90.00163 * 10 7 6 12 12 C 1.38232 * 119.99893 * 179.97438 * 11 10 7 13 13 C 1.38232 * 120.00265 * 0.09090 * 12 11 10 14 14 C 1.38238 * 119.99812 * 359.86603 * 13 12 11 15 15 C 1.38232 * 120.00123 * 269.97706 * 10 7 6 16 16 N 1.46504 * 109.46815 * 239.99872 * 2 1 3 17 17 C 1.34775 * 119.99919 * 85.00542 * 16 2 1 18 18 O 1.21684 * 120.00137 * 359.97438 * 17 16 2 19 19 C 1.46376 * 119.99800 * 180.02562 * 17 16 2 20 20 H 1.07999 * 119.99942 * 353.93230 * 19 17 16 21 21 C 1.40050 * 119.99953 * 173.93846 * 19 17 16 22 22 N 1.30674 * 119.99743 * 6.14589 * 21 19 17 23 23 Si 1.86793 * 120.00206 * 186.14820 * 21 19 17 24 24 H 1.48506 * 109.47342 * 94.97956 * 23 21 19 25 25 H 1.48498 * 109.47322 * 214.98362 * 23 21 19 26 26 H 1.48502 * 109.47295 * 334.98522 * 23 21 19 27 27 H 1.08995 * 109.47495 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46669 * 299.99940 * 1 2 3 29 29 H 1.09002 * 109.46886 * 59.99750 * 1 2 3 30 30 H 1.08991 * 109.47054 * 64.99424 * 4 2 1 31 31 H 1.08998 * 109.46697 * 304.99123 * 4 2 1 32 32 H 1.09000 * 109.47639 * 59.99655 * 5 4 2 33 33 H 1.09001 * 109.47131 * 299.99720 * 5 4 2 34 34 H 0.97002 * 119.99993 * 345.00247 * 6 5 4 35 35 H 1.08003 * 119.99577 * 359.70224 * 11 10 7 36 36 H 1.08005 * 119.99862 * 179.97438 * 12 11 10 37 37 H 1.07994 * 120.00362 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.00099 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.99932 * 0.02562 * 15 10 7 40 40 H 0.97006 * 119.99884 * 264.99844 * 16 2 1 41 41 H 0.97005 * 119.99667 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 7 4.0531 -1.3036 2.5100 7 16 5.6607 -1.6742 2.6541 8 8 6.0414 -2.2907 1.4317 9 8 5.8166 -2.2987 3.9210 10 6 6.5417 -0.1506 2.7384 11 6 6.7797 0.4432 3.9639 12 6 7.4713 1.6383 4.0301 13 6 7.9234 2.2404 2.8708 14 6 7.6862 1.6461 1.6455 15 6 6.9954 0.4506 1.5793 16 7 2.0183 -0.6907 -1.1962 17 6 2.1470 -0.0183 -2.3571 18 8 1.8573 1.1623 -2.4119 19 6 2.6344 -0.7085 -3.5524 20 1 2.9831 -1.7283 -3.4827 21 6 2.6484 -0.0465 -4.7865 22 7 2.3411 1.2219 -4.8510 23 14 3.1064 -0.9767 -6.3403 24 1 1.8720 -1.4565 -7.0121 25 1 3.8499 -0.0748 -7.2562 26 1 3.9615 -2.1386 -5.9878 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7516 -1.7715 1.2056 31 1 1.6055 -0.2618 2.1369 32 1 3.8533 0.4368 1.3572 33 1 3.9994 -1.0730 0.4259 34 1 3.4348 -1.5435 3.2179 35 1 6.4213 -0.0243 4.8691 36 1 7.6568 2.1024 4.9875 37 1 8.4634 3.1742 2.9225 38 1 8.0397 2.1163 0.7398 39 1 6.8095 -0.0134 0.6219 40 1 2.2490 -1.6319 -1.1526 41 1 2.3505 1.6804 -5.7058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338735183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:35 Heat of formation + Delta-G solvation = -97.231028 kcal Electronic energy + Delta-G solvation = -25374.009097 eV Core-core repulsion = 21573.454885 eV Total energy + Delta-G solvation = -3800.554211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.29397 -38.02483 -37.29805 -36.04820 -35.91050 -33.97542 -32.37483 -31.52723 -31.25929 -30.19877 -28.19516 -26.07227 -23.45190 -23.21711 -22.88681 -21.11802 -19.67107 -19.31360 -18.31308 -17.58888 -17.03036 -16.37488 -16.22510 -15.53407 -15.33598 -15.05088 -14.78198 -14.52103 -14.21084 -13.93914 -13.75918 -13.24809 -13.11951 -12.97902 -12.49712 -12.36332 -12.25591 -12.15659 -12.07128 -11.85269 -11.63449 -11.51703 -11.49710 -11.06326 -10.97353 -10.90429 -10.69388 -10.45655 -10.27873 -10.17205 -9.67764 -9.53878 -9.27809 -8.83403 -7.60440 -7.50570 -6.18203 -4.61695 0.26525 0.62351 1.05859 2.87493 3.15414 3.23188 3.27010 3.30425 3.68278 4.12566 4.20392 4.59348 4.60742 4.64715 4.73594 4.79383 4.93734 5.07158 5.10054 5.24226 5.27676 5.43837 5.53650 5.67953 5.73876 5.82746 5.86147 5.89484 5.97767 6.05545 6.11151 6.16538 6.23941 6.24832 6.58619 6.66203 6.82266 6.87448 7.45968 7.95373 8.12586 8.36031 9.04979 9.55038 10.61011 10.79982 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.003410 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.069163 B = 8208.547012 C = 8863.418930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.114 3.886 6 N -1.116 6.116 7 S 2.695 3.305 8 O -0.950 6.950 9 O -0.966 6.966 10 C -0.677 4.677 11 C -0.022 4.022 12 C -0.145 4.145 13 C -0.065 4.065 14 C -0.138 4.138 15 C -0.017 4.017 16 N -0.763 5.763 17 C 0.556 3.444 18 O -0.581 6.581 19 C -0.546 4.546 20 H 0.068 0.932 21 C 0.089 3.911 22 N -0.769 5.769 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.380 0.620 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -0.840 17.588 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.876 5.876 7 S 2.785 3.215 8 O -0.940 6.940 9 O -0.956 6.956 10 C -0.764 4.764 11 C -0.041 4.041 12 C -0.164 4.164 13 C -0.084 4.084 14 C -0.157 4.157 15 C -0.036 4.036 16 N -0.419 5.419 17 C 0.360 3.640 18 O -0.464 6.464 19 C -0.583 4.583 20 H 0.086 0.914 21 C -0.131 4.131 22 N -0.397 5.397 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.188 1.188 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.251 0.749 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.212 0.788 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.299 -0.556 17.302 18.787 hybrid contribution 0.123 -0.107 -0.432 0.462 sum 7.423 -0.663 16.870 18.443 Atomic orbital electron populations 1.22159 0.96756 1.01085 1.01582 1.20438 0.93115 0.97419 0.84580 0.90417 1.22058 0.93512 1.02092 0.99166 1.21441 0.96702 0.96718 0.86251 1.55495 1.26372 1.76191 1.29550 1.01822 0.72544 0.73636 0.73529 1.93623 1.81890 1.72718 1.45791 1.93575 1.85512 1.73736 1.42751 1.30991 1.19995 1.25645 0.99734 1.20913 0.93428 0.93825 0.95972 1.21287 1.00006 0.96204 0.98888 1.21521 0.95439 0.98709 0.92689 1.21390 0.99839 0.96021 0.98467 1.21099 0.91528 0.93655 0.97315 1.46265 1.73133 1.12856 1.09628 1.18185 0.77852 0.86321 0.81603 1.90591 1.55155 1.16339 1.84324 1.20922 1.45358 1.00156 0.91905 0.91374 1.25682 0.93036 0.94352 0.99988 1.70030 1.35223 1.08861 1.25627 0.86403 0.79042 0.80118 0.81470 1.19879 1.20527 1.18810 0.93340 0.93392 0.91769 0.90906 0.90776 0.91646 0.89168 0.74909 0.84389 0.85142 0.85243 0.84726 0.83778 0.78790 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 37.16 0.35 -2.21 16 2 C 0.15 2.61 2.57 -67.93 -0.17 2.44 16 3 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.13 -1.59 4.90 -26.73 -0.13 -1.72 16 5 C 0.11 1.44 6.11 -4.04 -0.02 1.42 16 6 N -1.12 -11.71 6.00 -10.61 -0.06 -11.77 16 7 S 2.70 33.42 5.74 -107.50 -0.62 32.80 16 8 O -0.95 -15.05 16.75 -57.17 -0.96 -16.01 16 9 O -0.97 -13.41 17.29 -57.17 -0.99 -14.40 16 10 C -0.68 -7.93 5.95 -39.58 -0.24 -8.16 16 11 C -0.02 -0.23 9.52 -39.58 -0.38 -0.60 16 12 C -0.15 -1.29 10.05 -39.59 -0.40 -1.68 16 13 C -0.07 -0.58 10.05 -39.58 -0.40 -0.98 16 14 C -0.14 -1.44 10.05 -39.58 -0.40 -1.84 16 15 C -0.02 -0.20 9.52 -39.59 -0.38 -0.58 16 16 N -0.76 -15.92 4.53 -55.21 -0.25 -16.17 16 17 C 0.56 15.16 7.71 -12.99 -0.10 15.06 16 18 O -0.58 -18.03 14.71 5.20 0.08 -17.95 16 19 C -0.55 -15.16 9.53 -35.63 -0.34 -15.50 16 20 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 21 C 0.09 2.45 5.49 -17.36 -0.10 2.36 16 22 N -0.77 -22.70 11.85 55.55 0.66 -22.04 16 23 Si 0.90 20.09 29.56 -169.99 -5.03 15.06 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.32 7.36 -51.93 -0.38 0.94 16 34 H 0.42 3.34 8.65 -34.47 -0.30 3.04 16 35 H 0.14 1.18 7.62 -52.48 -0.40 0.78 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.74 7.62 -52.48 -0.40 1.34 16 40 H 0.38 7.13 8.58 -40.82 -0.35 6.78 16 41 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -37.42 365.26 -9.93 -47.35 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.58 Total: 9.62 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.70 Total: -11.99 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.34 Total: -49.98 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -1.87 Total: -48.36 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Atomic # 16 Polarization: 33.42 SS G_CDS: -0.62 Total: 32.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.42 -9.93 -47.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338735183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.882 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds