Wall clock time and date at job start Fri Apr 10 2020 18:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47352 * 2 1 4 4 C 1.52995 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47323 * 54.99841 * 4 3 2 6 6 N 1.46505 * 109.47137 * 294.99583 * 4 3 2 7 7 S 1.65597 * 119.99617 * 145.00247 * 6 4 3 8 8 O 1.42104 * 106.39977 * 178.54040 * 7 6 4 9 9 O 1.42098 * 106.40323 * 311.46245 * 7 6 4 10 10 C 1.76194 * 107.22140 * 65.00229 * 7 6 4 11 11 C 1.38657 * 119.87901 * 269.73054 * 10 7 6 12 12 C 1.38612 * 120.50606 * 179.72365 * 11 10 7 13 13 C 1.37641 * 120.24472 * 0.54415 * 12 11 10 14 14 C 1.40698 * 119.74285 * 359.72934 * 13 12 11 15 15 C 1.41396 * 120.23862 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99544 * 204.37060 * 15 14 13 17 17 C 1.39948 * 120.00620 * 24.36878 * 15 14 13 18 18 N 1.30823 * 119.99515 * 17.87785 * 17 15 14 19 19 Si 1.86795 * 120.00013 * 197.88203 * 17 15 14 20 20 H 1.48493 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46925 * 120.00187 * 19 17 15 22 22 H 1.48497 * 109.46906 * 239.99754 * 19 17 15 23 23 C 1.37603 * 119.87851 * 89.99608 * 10 7 6 24 24 C 1.50708 * 109.46935 * 174.99887 * 4 3 2 25 25 N 1.34772 * 120.00086 * 299.99959 * 24 4 3 26 26 O 1.21275 * 119.99783 * 119.99747 * 24 4 3 27 27 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47080 * 300.00098 * 1 2 3 29 29 H 1.08999 * 109.46820 * 60.00091 * 1 2 3 30 30 H 1.08998 * 109.47339 * 239.99430 * 2 1 3 31 31 H 1.09008 * 109.46958 * 120.00158 * 2 1 3 32 32 H 1.09007 * 109.46643 * 59.99780 * 3 2 1 33 33 H 1.08999 * 109.46653 * 300.00067 * 3 2 1 34 34 H 0.96999 * 119.99845 * 325.00145 * 6 4 3 35 35 H 1.08007 * 119.74614 * 359.97438 * 11 10 7 36 36 H 1.08001 * 119.87594 * 180.25207 * 12 11 10 37 37 H 1.08000 * 120.12450 * 179.75132 * 13 12 11 38 38 H 0.96997 * 119.99558 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.12379 * 359.97438 * 23 10 7 40 40 H 0.97006 * 119.99966 * 0.02562 * 25 24 4 41 41 H 0.96994 * 120.00205 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8408 6 7 4.0578 0.8589 1.2528 7 16 5.4414 -0.0510 1.2585 8 8 5.6621 -0.4373 2.6081 9 8 5.3127 -0.9836 0.1942 10 6 6.7716 1.0196 0.8236 11 6 7.1286 1.1722 -0.5075 12 6 8.1692 2.0153 -0.8647 13 6 8.8675 2.7027 0.1019 14 6 8.5177 2.5512 1.4563 15 6 9.2277 3.2528 2.4578 16 1 9.2517 2.8735 3.4688 17 6 9.8993 4.4385 2.1393 18 7 9.6004 5.0849 1.0419 19 14 11.2225 5.0981 3.2809 20 1 11.3696 4.1889 4.4457 21 1 12.5123 5.1786 2.5493 22 1 10.8373 6.4514 3.7554 23 6 7.4558 1.6969 1.8067 24 6 4.0725 2.8579 -0.1232 25 7 3.7473 3.5963 -1.2027 26 8 4.7693 3.3324 0.7486 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8900 34 1 3.5704 1.0056 2.0785 35 1 6.5891 0.6330 -1.2722 36 1 8.4360 2.1297 -1.9049 37 1 9.6806 3.3560 -0.1782 38 1 10.0656 5.9069 0.8212 39 1 7.1786 1.5736 2.8433 40 1 3.1896 3.2168 -1.8999 41 1 4.0704 4.5074 -1.2823 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586775277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:14 Heat of formation + Delta-G solvation = -108.028730 kcal Electronic energy + Delta-G solvation = -26510.364339 eV Core-core repulsion = 22709.341904 eV Total energy + Delta-G solvation = -3801.022435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55638 -37.49628 -36.69562 -36.22659 -35.29315 -33.73694 -33.52823 -33.12831 -29.95940 -29.66677 -28.74807 -25.38833 -24.74273 -21.79583 -21.41981 -20.88807 -20.38806 -19.22741 -18.00063 -17.56983 -17.06136 -16.50219 -15.81575 -15.69619 -15.15687 -14.94337 -14.69727 -14.58802 -14.27157 -13.79227 -13.40821 -13.36129 -13.26543 -12.81261 -12.49488 -12.11618 -11.80200 -11.72497 -11.58103 -11.50343 -11.33726 -11.31194 -11.29829 -11.12509 -10.89532 -10.82852 -10.80812 -10.53838 -10.35576 -9.64405 -9.45707 -9.41701 -9.24992 -9.02083 -7.88401 -7.56389 -6.81412 -4.40508 1.05161 2.33186 2.74405 2.90301 3.06074 3.11645 3.14020 3.39064 3.75734 3.91343 4.29753 4.51182 4.58445 4.71807 4.76130 5.00029 5.06816 5.17129 5.31143 5.35244 5.54650 5.62480 5.65802 5.80683 5.90077 6.08286 6.13028 6.16135 6.23965 6.76615 6.88030 6.94410 6.99849 7.11653 7.18835 7.35567 7.50778 7.51345 7.83748 7.93209 8.07100 8.52844 8.53587 8.79166 8.85060 10.14079 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.004086 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.214592 B = 6851.358688 C = 7377.712138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.116 4.116 4 C 0.137 3.863 5 H 0.117 0.883 6 N -1.096 6.096 7 S 2.686 3.314 8 O -0.971 6.971 9 O -0.976 6.976 10 C -0.620 4.620 11 C -0.154 4.154 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.096 3.904 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.101 4.101 24 C 0.489 3.511 25 N -0.859 5.859 26 O -0.494 6.494 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.417 0.583 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.280 0.720 39 H 0.108 0.892 40 H 0.395 0.605 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 -2.794 -6.027 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.156 4.156 4 C 0.025 3.975 5 H 0.134 0.866 6 N -0.852 5.852 7 S 2.783 3.217 8 O -0.961 6.961 9 O -0.966 6.966 10 C -0.713 4.713 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.140 4.140 14 C 0.092 3.908 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.122 4.122 24 C 0.269 3.731 25 N -0.425 5.425 26 O -0.365 6.365 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.223 0.777 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.049 -3.404 -5.399 15.431 hybrid contribution 0.628 1.582 0.086 1.704 sum -13.421 -1.822 -5.314 14.549 Atomic orbital electron populations 1.21773 0.95683 1.01752 1.01704 1.21566 0.95709 0.95897 1.03375 1.21840 0.91664 0.98541 1.03518 1.20690 0.96222 0.92107 0.88482 0.86564 1.55390 1.44210 1.70611 1.14944 1.01737 0.73034 0.73797 0.73180 1.93540 1.85061 1.81724 1.35779 1.93509 1.86333 1.59467 1.57299 1.29508 1.19734 1.20434 1.01641 1.19935 1.02040 1.02970 0.92557 1.20709 0.97381 0.98093 0.97636 1.21554 0.99820 0.99645 0.92967 1.17628 0.89818 0.90325 0.92984 1.19634 1.26802 1.05554 0.96935 0.90044 1.25909 0.96474 0.96167 0.95698 1.69817 1.34796 1.13717 1.23504 0.86237 0.80399 0.79057 0.80935 1.18251 1.19700 1.19963 1.20677 0.96244 0.99084 0.96228 1.21184 0.80760 0.88698 0.82428 1.43825 1.56608 1.18197 1.23869 1.90911 1.34469 1.71815 1.39286 0.92628 0.92760 0.92763 0.91174 0.91253 0.90565 0.90228 0.74860 0.88249 0.88839 0.86009 0.90893 0.87380 0.77698 0.76741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -1.10 5.82 -26.73 -0.16 -1.26 16 3 C -0.12 -1.01 4.76 -26.73 -0.13 -1.13 16 4 C 0.14 1.73 2.71 -69.08 -0.19 1.54 16 5 H 0.12 1.40 7.50 -51.93 -0.39 1.01 16 6 N -1.10 -16.33 4.41 -5.88 -0.03 -16.36 16 7 S 2.69 51.82 5.72 -107.50 -0.61 51.21 16 8 O -0.97 -21.10 17.27 -57.17 -0.99 -22.08 16 9 O -0.98 -19.41 16.60 -57.17 -0.95 -20.36 16 10 C -0.62 -14.19 5.13 -39.66 -0.20 -14.39 16 11 C -0.15 -3.43 9.53 -39.29 -0.37 -3.80 16 12 C -0.12 -2.77 10.02 -39.66 -0.40 -3.16 16 13 C -0.12 -3.13 8.70 -38.87 -0.34 -3.46 16 14 C 0.10 2.61 5.58 -106.83 -0.60 2.02 16 15 C -0.46 -12.47 9.05 -37.74 -0.34 -12.81 16 16 H 0.08 2.14 7.91 -52.48 -0.42 1.72 16 17 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 18 N -0.79 -20.55 10.95 55.55 0.61 -19.95 16 19 Si 0.91 18.91 29.60 -169.99 -5.03 13.88 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.10 -2.59 9.26 -38.87 -0.36 -2.95 16 24 C 0.49 7.28 7.49 -10.98 -0.08 7.20 16 25 N -0.86 -9.04 8.74 31.22 0.27 -8.77 16 26 O -0.49 -10.19 16.46 5.56 0.09 -10.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 7.75 -51.92 -0.40 0.26 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.49 7.43 -51.93 -0.39 0.10 16 34 H 0.42 5.37 8.84 -34.47 -0.30 5.07 16 35 H 0.10 1.96 7.59 -52.48 -0.40 1.56 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.23 6.15 -52.49 -0.32 2.90 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 39 H 0.11 2.71 7.60 -52.48 -0.40 2.31 16 40 H 0.40 2.58 8.19 -40.82 -0.33 2.24 16 41 H 0.40 4.27 8.93 -40.82 -0.36 3.90 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -34.98 359.12 -9.49 -44.47 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.39 Total: 13.72 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -2.88 Total: -31.08 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.86 Total: -45.07 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -1.84 Total: -52.54 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.61 Total: 51.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.98 -9.49 -44.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586775277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.556 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds