Wall clock time and date at job start Fri Apr 10 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47352 * 2 1 4 4 C 1.52995 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47323 * 54.99841 * 4 3 2 6 6 N 1.46505 * 109.47137 * 294.99583 * 4 3 2 7 7 S 1.65597 * 119.99617 * 145.00247 * 6 4 3 8 8 O 1.42104 * 106.39977 * 178.54040 * 7 6 4 9 9 O 1.42098 * 106.40323 * 311.46245 * 7 6 4 10 10 C 1.76194 * 107.22140 * 65.00229 * 7 6 4 11 11 C 1.38657 * 119.87901 * 269.73054 * 10 7 6 12 12 C 1.38612 * 120.50606 * 179.72365 * 11 10 7 13 13 C 1.37641 * 120.24472 * 0.54415 * 12 11 10 14 14 C 1.40698 * 119.74285 * 359.72934 * 13 12 11 15 15 C 1.41396 * 120.23862 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99544 * 204.37060 * 15 14 13 17 17 C 1.39948 * 120.00620 * 24.36878 * 15 14 13 18 18 N 1.30823 * 119.99515 * 17.87785 * 17 15 14 19 19 Si 1.86795 * 120.00013 * 197.88203 * 17 15 14 20 20 H 1.48493 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46925 * 120.00187 * 19 17 15 22 22 H 1.48497 * 109.46906 * 239.99754 * 19 17 15 23 23 C 1.37603 * 119.87851 * 89.99608 * 10 7 6 24 24 C 1.50708 * 109.46935 * 174.99887 * 4 3 2 25 25 N 1.34772 * 120.00086 * 299.99959 * 24 4 3 26 26 O 1.21275 * 119.99783 * 119.99747 * 24 4 3 27 27 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47080 * 300.00098 * 1 2 3 29 29 H 1.08999 * 109.46820 * 60.00091 * 1 2 3 30 30 H 1.08998 * 109.47339 * 239.99430 * 2 1 3 31 31 H 1.09008 * 109.46958 * 120.00158 * 2 1 3 32 32 H 1.09007 * 109.46643 * 59.99780 * 3 2 1 33 33 H 1.08999 * 109.46653 * 300.00067 * 3 2 1 34 34 H 0.96999 * 119.99845 * 325.00145 * 6 4 3 35 35 H 1.08007 * 119.74614 * 359.97438 * 11 10 7 36 36 H 1.08001 * 119.87594 * 180.25207 * 12 11 10 37 37 H 1.08000 * 120.12450 * 179.75132 * 13 12 11 38 38 H 0.96997 * 119.99558 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.12379 * 359.97438 * 23 10 7 40 40 H 0.97006 * 119.99966 * 0.02562 * 25 24 4 41 41 H 0.96994 * 120.00205 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8408 6 7 4.0578 0.8589 1.2528 7 16 5.4414 -0.0510 1.2585 8 8 5.6621 -0.4373 2.6081 9 8 5.3127 -0.9836 0.1942 10 6 6.7716 1.0196 0.8236 11 6 7.1286 1.1722 -0.5075 12 6 8.1692 2.0153 -0.8647 13 6 8.8675 2.7027 0.1019 14 6 8.5177 2.5512 1.4563 15 6 9.2277 3.2528 2.4578 16 1 9.2517 2.8735 3.4688 17 6 9.8993 4.4385 2.1393 18 7 9.6004 5.0849 1.0419 19 14 11.2225 5.0981 3.2809 20 1 11.3696 4.1889 4.4457 21 1 12.5123 5.1786 2.5493 22 1 10.8373 6.4514 3.7554 23 6 7.4558 1.6969 1.8067 24 6 4.0725 2.8579 -0.1232 25 7 3.7473 3.5963 -1.2027 26 8 4.7693 3.3324 0.7486 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8900 34 1 3.5704 1.0056 2.0785 35 1 6.5891 0.6330 -1.2722 36 1 8.4360 2.1297 -1.9049 37 1 9.6806 3.3560 -0.1782 38 1 10.0656 5.9069 0.8212 39 1 7.1786 1.5736 2.8433 40 1 3.1896 3.2168 -1.8999 41 1 4.0704 4.5074 -1.2823 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586775277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:13 Heat of formation + Delta-G solvation = -136.021548 kcal Electronic energy + Delta-G solvation = -26511.578198 eV Core-core repulsion = 22709.341904 eV Total energy + Delta-G solvation = -3802.236295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70845 -39.38106 -38.30191 -37.27494 -36.93023 -35.64397 -34.61501 -34.05286 -31.88366 -31.54191 -29.65631 -27.33418 -25.59979 -23.63653 -22.79086 -22.10060 -21.50477 -20.73018 -19.73416 -18.63775 -18.58992 -17.78428 -17.53775 -17.01774 -16.71886 -16.50707 -16.01953 -15.81891 -15.48092 -15.20086 -15.06150 -14.85373 -14.30648 -14.16352 -13.77256 -13.64414 -13.30972 -13.22601 -13.09576 -13.04072 -12.98232 -12.77980 -12.63233 -12.61159 -12.22598 -12.09060 -11.93129 -11.74873 -11.52325 -11.43857 -11.16960 -11.13823 -10.49038 -10.29178 -9.75857 -9.50508 -8.71110 -6.42339 -0.50772 0.47743 0.88837 1.34198 1.43037 1.50001 1.76909 1.99796 2.17441 2.53114 2.69584 2.79721 3.41239 3.57184 3.68879 3.94970 4.02952 4.21069 4.31820 4.38646 4.43490 4.53090 4.70798 4.85130 4.92714 4.94822 4.98942 5.07156 5.09986 5.22161 5.35536 5.42588 5.46381 5.56746 5.60407 5.90619 5.96296 5.98539 6.03218 6.15349 6.55757 6.60386 6.82156 6.89067 7.51569 8.27140 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.004086 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.214592 B = 6851.358688 C = 7377.712138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.108 4.108 4 C 0.131 3.869 5 H 0.129 0.871 6 N -1.083 6.083 7 S 2.716 3.284 8 O -0.997 6.997 9 O -0.975 6.975 10 C -0.628 4.628 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.142 4.142 14 C 0.066 3.934 15 C -0.504 4.504 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.822 5.822 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.128 4.128 24 C 0.484 3.516 25 N -0.837 5.837 26 O -0.561 6.561 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.427 0.573 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.290 0.710 39 H 0.096 0.904 40 H 0.418 0.582 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 -2.971 -7.748 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.147 4.147 4 C 0.020 3.980 5 H 0.147 0.853 6 N -0.843 5.843 7 S 2.808 3.192 8 O -0.988 6.988 9 O -0.965 6.965 10 C -0.717 4.717 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.063 3.937 15 C -0.533 4.533 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.448 5.448 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.183 1.183 22 H -0.189 1.189 23 C -0.150 4.150 24 C 0.266 3.734 25 N -0.403 5.403 26 O -0.438 6.438 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.264 0.736 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.250 0.750 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -15.823 -3.571 -7.195 17.745 hybrid contribution 0.975 1.580 0.480 1.918 sum -14.848 -1.992 -6.715 16.417 Atomic orbital electron populations 1.21751 0.94319 1.02120 1.02483 1.21603 0.96920 0.95517 1.02892 1.21886 0.88228 0.99218 1.05368 1.21074 0.98907 0.90573 0.87443 0.85308 1.55055 1.42147 1.70366 1.16731 1.00910 0.72736 0.73254 0.72255 1.93500 1.85731 1.82291 1.37260 1.93504 1.86394 1.59306 1.57270 1.30110 1.20571 1.19579 1.01429 1.20367 1.01264 1.02015 0.93095 1.21070 0.96978 0.97296 0.98677 1.21555 1.00618 1.00772 0.93260 1.17978 0.90653 0.91187 0.93864 1.19855 1.29357 1.07236 0.96855 0.90946 1.26742 0.97997 0.95695 0.97426 1.69849 1.35678 1.14279 1.24947 0.85141 0.77496 0.78358 0.78604 1.18475 1.18319 1.18921 1.20676 0.97083 1.00666 0.96535 1.21625 0.79808 0.89607 0.82328 1.43659 1.55573 1.17926 1.23127 1.90909 1.37720 1.73322 1.41841 0.92549 0.92636 0.91351 0.90908 0.92632 0.90251 0.86848 0.73610 0.84924 0.85712 0.87234 0.89955 0.88542 0.75038 0.76574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.13 -1.87 5.82 30.60 0.18 -1.69 16 3 C -0.11 -1.50 4.76 30.59 0.15 -1.35 16 4 C 0.13 2.98 2.71 44.25 0.12 3.10 16 5 H 0.13 2.64 7.50 -2.39 -0.02 2.62 16 6 N -1.08 -30.99 4.41 -172.52 -0.76 -31.75 16 7 S 2.72 102.89 5.72 -56.49 -0.32 102.56 16 8 O -1.00 -43.72 17.27 -128.00 -2.21 -45.93 16 9 O -0.97 -36.66 16.60 -128.00 -2.12 -38.78 16 10 C -0.63 -28.89 5.13 22.22 0.11 -28.78 16 11 C -0.15 -6.37 9.53 22.46 0.21 -6.16 16 12 C -0.12 -5.60 10.02 22.22 0.22 -5.37 16 13 C -0.14 -7.65 8.70 22.73 0.20 -7.45 16 14 C 0.07 3.79 5.58 -21.29 -0.12 3.68 16 15 C -0.50 -28.85 9.05 23.46 0.21 -28.64 16 16 H 0.07 4.08 7.91 -2.91 -0.02 4.06 16 17 C 0.04 1.90 5.14 85.26 0.44 2.34 16 18 N -0.82 -43.84 10.95 21.83 0.24 -43.60 16 19 Si 0.98 39.68 29.60 68.60 2.03 41.71 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 23 C -0.13 -6.89 9.26 22.73 0.21 -6.68 16 24 C 0.48 13.67 7.49 87.66 0.66 14.33 16 25 N -0.84 -15.52 8.74 -173.54 -1.52 -17.03 16 26 O -0.56 -23.40 16.46 -3.01 -0.05 -23.45 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.94 7.75 -2.38 -0.02 0.92 16 32 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 0.84 7.43 -2.39 -0.02 0.82 16 34 H 0.43 10.65 8.84 -96.74 -0.85 9.80 16 35 H 0.13 4.81 7.59 -2.91 -0.02 4.79 16 36 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 37 H 0.11 6.04 6.15 -2.91 -0.02 6.02 16 38 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 39 H 0.10 5.20 7.60 -2.91 -0.02 5.18 16 40 H 0.42 3.84 8.19 -92.70 -0.76 3.08 16 41 H 0.40 7.84 8.93 -92.71 -0.83 7.01 16 Total: -1.00 -79.50 359.12 -2.76 -82.26 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -1.35 Total: 37.59 kcal Atomic # 6 Polarization: -66.88 SS G_CDS: 3.30 Total: -63.58 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -2.04 Total: -92.39 kcal Atomic # 8 Polarization: -103.78 SS G_CDS: -4.38 Total: -108.17 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: 102.89 SS G_CDS: -0.32 Total: 102.56 kcal Total: -79.50 -2.76 -82.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586775277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.759 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds