Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46725 * 2 1 4 4 N 1.46504 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99839 * 275.00571 * 4 3 2 6 6 C 1.50697 * 109.46921 * 274.99951 * 5 4 3 7 7 N 1.34779 * 119.99985 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00148 * 0.02562 * 6 5 4 9 9 S 1.65597 * 119.99873 * 95.00444 * 4 3 2 10 10 O 1.42098 * 106.40087 * 336.45828 * 9 4 3 11 11 O 1.42098 * 106.39917 * 203.54135 * 9 4 3 12 12 C 1.76200 * 107.21637 * 90.00140 * 9 4 3 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 4 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 4 26 26 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47040 * 299.99180 * 1 2 3 28 28 H 1.09000 * 109.47651 * 59.99550 * 1 2 3 29 29 H 1.09000 * 109.46628 * 240.01150 * 2 1 3 30 30 H 1.08994 * 109.47916 * 120.00820 * 2 1 3 31 31 H 1.09001 * 109.46692 * 60.00607 * 3 2 1 32 32 H 1.09000 * 109.47423 * 300.00589 * 3 2 1 33 33 H 1.08994 * 109.47136 * 34.99735 * 5 4 3 34 34 H 1.08997 * 109.47057 * 155.00020 * 5 4 3 35 35 H 0.97000 * 119.99756 * 359.97438 * 7 6 5 36 36 H 0.96996 * 119.99804 * 180.02562 * 7 6 5 37 37 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 38 38 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 39 39 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 40 40 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.2380 1.3318 1.2630 6 6 4.3821 2.6984 1.8817 7 7 5.0269 2.8417 3.0565 8 8 3.9177 3.6693 1.3224 9 16 4.3323 1.5680 -1.4296 10 8 3.4502 1.1106 -2.4454 11 8 5.6153 1.0015 -1.2014 12 6 4.5929 3.2841 -1.7326 13 6 3.6510 4.0105 -2.4453 14 6 3.8458 5.3596 -2.6964 15 6 4.9736 5.9960 -2.2300 16 6 5.9333 5.2703 -1.5006 17 6 7.0960 5.9132 -1.0169 18 1 7.9885 5.3381 -0.8193 19 6 7.0903 7.2948 -0.7944 20 7 5.9547 7.9360 -0.6907 21 14 8.7043 8.2235 -0.6454 22 1 9.8369 7.2754 -0.7990 23 1 8.7790 9.2595 -1.7067 24 1 8.7799 8.8739 0.6875 25 6 5.7278 3.8996 -1.2566 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.6766 1.9563 0.8901 32 1 1.6765 1.9565 -0.8899 33 1 3.6909 0.6804 1.9444 34 1 5.2261 0.9124 1.0742 35 1 5.3979 2.0651 3.5039 36 1 5.1193 3.7212 3.4548 37 1 2.7608 3.5203 -2.8110 38 1 3.1077 5.9146 -3.2565 39 1 5.1214 7.0482 -2.4233 40 1 5.9508 8.8937 -0.5362 41 1 6.4580 3.3329 -0.6980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589934737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = -97.148657 kcal Electronic energy + Delta-G solvation = -26751.896917 eV Core-core repulsion = 22951.346278 eV Total energy + Delta-G solvation = -3800.550640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.25022 -37.47871 -36.84334 -36.36523 -35.29579 -33.72162 -33.39739 -32.80907 -29.94378 -29.64803 -27.99757 -25.36232 -25.06346 -21.79088 -21.57962 -20.85418 -20.60655 -18.66597 -17.95156 -17.33702 -16.98639 -16.59108 -15.79530 -15.74050 -15.12481 -14.73421 -14.61430 -14.51685 -14.26582 -13.80090 -13.36540 -13.27228 -13.22533 -12.48818 -12.47346 -12.21878 -11.97379 -11.78588 -11.55864 -11.47088 -11.39514 -11.33367 -11.30799 -11.15785 -10.89267 -10.80666 -10.58383 -10.50621 -10.04566 -9.63391 -9.46369 -9.39817 -9.24944 -8.75276 -7.84886 -7.54367 -6.80408 -4.40427 0.99571 2.35164 2.75014 2.93533 3.04541 3.10264 3.13421 3.33290 3.80506 3.90056 4.29605 4.51641 4.77707 4.82841 5.03671 5.08799 5.14617 5.29691 5.33677 5.44266 5.56448 5.72694 5.82671 5.89742 6.00105 6.15014 6.26526 6.28982 6.31595 6.62359 6.75082 6.89921 7.01887 7.04583 7.16116 7.37208 7.52566 7.53572 7.86976 7.92922 8.08158 8.53027 8.55975 8.79829 8.86019 10.15039 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.004534 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.180851 B = 6174.290309 C = 6749.225025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.129 3.871 4 N -0.980 5.980 5 C 0.099 3.901 6 C 0.480 3.520 7 N -0.860 5.860 8 O -0.496 6.496 9 S 2.684 3.316 10 O -0.969 6.969 11 O -0.974 6.974 12 C -0.620 4.620 13 C -0.142 4.142 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.096 3.904 17 C -0.463 4.463 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.793 5.793 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.108 4.108 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.396 0.604 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.280 0.720 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 -10.767 7.725 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.004 3.996 4 N -0.814 5.814 5 C -0.031 4.031 6 C 0.261 3.739 7 N -0.426 5.426 8 O -0.367 6.367 9 S 2.782 3.218 10 O -0.959 6.959 11 O -0.965 6.965 12 C -0.712 4.712 13 C -0.163 4.163 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.093 3.907 17 C -0.492 4.492 18 H 0.098 0.902 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.732 3.268 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.129 4.129 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.224 0.776 36 H 0.232 0.768 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.649 -10.758 6.732 13.891 hybrid contribution 0.861 1.439 0.867 1.888 sum -4.788 -9.319 7.599 12.943 Atomic orbital electron populations 1.21686 0.95210 1.01694 1.02096 1.22005 0.96227 0.97535 1.02697 1.21286 0.77906 0.96466 1.03938 1.57322 1.14866 1.88611 1.20574 1.21167 0.99833 0.94839 0.87300 1.21372 0.78670 0.92443 0.81370 1.43829 1.61008 1.13285 1.24504 1.90928 1.45638 1.40034 1.60132 1.01892 0.72510 0.75451 0.71969 1.93508 1.66297 1.81082 1.55023 1.93494 1.40044 1.77835 1.85096 1.29556 1.04950 1.22401 1.14321 1.19984 0.97964 0.94607 1.03721 1.20753 0.98010 0.94133 1.01140 1.21579 0.94615 1.00227 0.97276 1.17607 0.92838 0.90631 0.89673 1.19576 0.98324 0.92381 1.38956 0.90235 1.25895 0.97728 0.98084 0.92478 1.69827 1.27104 1.10393 1.34554 0.86271 0.82378 0.79646 0.78504 1.18321 1.19668 1.20006 1.20565 0.95200 0.96029 1.01133 0.92625 0.92724 0.92248 0.91051 0.91841 0.90457 0.89672 0.87447 0.86235 0.77641 0.76755 0.87979 0.88624 0.85947 0.90878 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.15 -1.62 6.26 -26.73 -0.17 -1.79 16 3 C 0.13 1.76 5.33 -4.04 -0.02 1.74 16 4 N -0.98 -15.28 2.27 -115.66 -0.26 -15.55 16 5 C 0.10 1.25 6.16 -5.19 -0.03 1.21 16 6 C 0.48 7.26 8.17 -10.99 -0.09 7.17 16 7 N -0.86 -9.29 8.87 31.22 0.28 -9.02 16 8 O -0.50 -10.29 16.61 5.55 0.09 -10.20 16 9 S 2.68 53.08 5.64 -107.50 -0.61 52.48 16 10 O -0.97 -20.11 16.24 -57.17 -0.93 -21.04 16 11 O -0.97 -20.46 15.82 -57.17 -0.90 -21.36 16 12 C -0.62 -14.53 5.62 -39.66 -0.22 -14.75 16 13 C -0.14 -3.32 9.53 -39.29 -0.37 -3.69 16 14 C -0.12 -2.92 10.02 -39.66 -0.40 -3.32 16 15 C -0.12 -3.11 8.70 -38.87 -0.34 -3.44 16 16 C 0.10 2.62 5.58 -106.82 -0.60 2.02 16 17 C -0.46 -12.43 9.05 -37.75 -0.34 -12.77 16 18 H 0.08 2.06 7.91 -52.49 -0.41 1.64 16 19 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 20 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 21 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.11 -2.74 8.96 -38.87 -0.35 -3.09 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.08 1.26 7.61 -51.93 -0.40 0.86 16 33 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.12 1.44 6.91 -51.93 -0.36 1.08 16 35 H 0.40 2.63 8.83 -40.82 -0.36 2.27 16 36 H 0.40 4.43 8.93 -40.82 -0.36 4.06 16 37 H 0.10 2.15 7.61 -52.49 -0.40 1.76 16 38 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 39 H 0.12 3.29 6.15 -52.49 -0.32 2.96 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.10 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -34.67 360.59 -9.50 -44.17 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.53 Total: 11.35 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -2.65 Total: -29.92 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.62 Total: -44.59 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -1.74 Total: -52.60 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.61 Total: 52.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.67 -9.50 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589934737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.975 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds