Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46725 * 2 1 4 4 N 1.46504 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99839 * 275.00571 * 4 3 2 6 6 C 1.50697 * 109.46921 * 274.99951 * 5 4 3 7 7 N 1.34779 * 119.99985 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00148 * 0.02562 * 6 5 4 9 9 S 1.65597 * 119.99873 * 95.00444 * 4 3 2 10 10 O 1.42098 * 106.40087 * 336.45828 * 9 4 3 11 11 O 1.42098 * 106.39917 * 203.54135 * 9 4 3 12 12 C 1.76200 * 107.21637 * 90.00140 * 9 4 3 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 4 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 4 26 26 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47040 * 299.99180 * 1 2 3 28 28 H 1.09000 * 109.47651 * 59.99550 * 1 2 3 29 29 H 1.09000 * 109.46628 * 240.01150 * 2 1 3 30 30 H 1.08994 * 109.47916 * 120.00820 * 2 1 3 31 31 H 1.09001 * 109.46692 * 60.00607 * 3 2 1 32 32 H 1.09000 * 109.47423 * 300.00589 * 3 2 1 33 33 H 1.08994 * 109.47136 * 34.99735 * 5 4 3 34 34 H 1.08997 * 109.47057 * 155.00020 * 5 4 3 35 35 H 0.97000 * 119.99756 * 359.97438 * 7 6 5 36 36 H 0.96996 * 119.99804 * 180.02562 * 7 6 5 37 37 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 38 38 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 39 39 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 40 40 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.2380 1.3318 1.2630 6 6 4.3821 2.6984 1.8817 7 7 5.0269 2.8417 3.0565 8 8 3.9177 3.6693 1.3224 9 16 4.3323 1.5680 -1.4296 10 8 3.4502 1.1106 -2.4454 11 8 5.6153 1.0015 -1.2014 12 6 4.5929 3.2841 -1.7326 13 6 3.6510 4.0105 -2.4453 14 6 3.8458 5.3596 -2.6964 15 6 4.9736 5.9960 -2.2300 16 6 5.9333 5.2703 -1.5006 17 6 7.0960 5.9132 -1.0169 18 1 7.9885 5.3381 -0.8193 19 6 7.0903 7.2948 -0.7944 20 7 5.9547 7.9360 -0.6907 21 14 8.7043 8.2235 -0.6454 22 1 9.8369 7.2754 -0.7990 23 1 8.7790 9.2595 -1.7067 24 1 8.7799 8.8739 0.6875 25 6 5.7278 3.8996 -1.2566 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.6766 1.9563 0.8901 32 1 1.6765 1.9565 -0.8899 33 1 3.6909 0.6804 1.9444 34 1 5.2261 0.9124 1.0742 35 1 5.3979 2.0651 3.5039 36 1 5.1193 3.7212 3.4548 37 1 2.7608 3.5203 -2.8110 38 1 3.1077 5.9146 -3.2565 39 1 5.1214 7.0482 -2.4233 40 1 5.9508 8.8937 -0.5362 41 1 6.4580 3.3329 -0.6980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589934737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = -123.524928 kcal Electronic energy + Delta-G solvation = -26753.040678 eV Core-core repulsion = 22951.346278 eV Total energy + Delta-G solvation = -3801.694401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44547 -39.38855 -38.40168 -37.56464 -36.92752 -35.64396 -34.53105 -33.75208 -31.89336 -31.54857 -29.01444 -27.32594 -26.11665 -23.62792 -22.81198 -22.49762 -21.78634 -20.24620 -19.50758 -18.78348 -18.14134 -17.89077 -17.55817 -17.07116 -16.81410 -16.48137 -15.91071 -15.79218 -15.42161 -15.17602 -15.11835 -14.87771 -14.32210 -14.20806 -13.77783 -13.63227 -13.39572 -13.30265 -13.10998 -13.06530 -13.00570 -12.78695 -12.63823 -12.62638 -12.37995 -12.28088 -12.18957 -11.56342 -11.48208 -11.39445 -11.14031 -11.13095 -10.48349 -10.04828 -9.72471 -9.51222 -8.70352 -6.42443 -0.55207 0.47598 0.88228 1.34561 1.43528 1.50742 1.78985 1.93167 2.16915 2.54753 2.71860 2.79176 3.33859 3.53626 3.72415 4.08711 4.16214 4.22101 4.28667 4.39610 4.43310 4.46586 4.52635 4.79519 4.81563 4.91158 4.92059 5.03770 5.07993 5.20442 5.23874 5.37787 5.43727 5.47444 5.58390 5.61207 5.90773 5.95292 6.02494 6.12841 6.54744 6.62372 6.82096 6.88592 7.52900 8.27882 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.004534 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.180851 B = 6174.290309 C = 6749.225025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.972 5.972 5 C 0.093 3.907 6 C 0.474 3.526 7 N -0.840 5.840 8 O -0.563 6.563 9 S 2.709 3.291 10 O -0.978 6.978 11 O -0.986 6.986 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.126 4.126 15 C -0.145 4.145 16 C 0.066 3.934 17 C -0.499 4.499 18 H 0.076 0.924 19 C 0.036 3.964 20 N -0.824 5.824 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.263 1.263 24 H -0.263 1.263 25 C -0.123 4.123 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.165 0.835 34 H 0.129 0.871 35 H 0.419 0.581 36 H 0.402 0.598 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.289 0.711 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 -12.329 9.318 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.003 4.003 4 N -0.808 5.808 5 C -0.036 4.036 6 C 0.257 3.743 7 N -0.406 5.406 8 O -0.440 6.440 9 S 2.802 3.198 10 O -0.968 6.968 11 O -0.977 6.977 12 C -0.720 4.720 13 C -0.170 4.170 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.063 3.937 17 C -0.529 4.529 18 H 0.095 0.905 19 C -0.179 4.179 20 N -0.450 5.450 21 Si 0.804 3.196 22 H -0.181 1.181 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.144 4.144 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.182 0.818 34 H 0.147 0.853 35 H 0.250 0.750 36 H 0.232 0.768 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.894 -12.321 8.349 16.008 hybrid contribution 0.841 1.807 0.474 2.049 sum -5.053 -10.514 8.823 14.626 Atomic orbital electron populations 1.21696 0.93910 1.02757 1.02259 1.21987 0.97290 0.95432 1.03270 1.21538 0.76465 0.98469 1.03801 1.57063 1.15724 1.87671 1.20331 1.21602 1.01029 0.94272 0.86706 1.21879 0.77982 0.92661 0.81819 1.43682 1.59271 1.14399 1.23240 1.90914 1.48800 1.42102 1.62133 1.01229 0.72296 0.73475 0.72773 1.93489 1.66358 1.80357 1.56606 1.93470 1.41320 1.77204 1.85657 1.30261 1.03791 1.25179 1.12736 1.20346 0.98762 0.94542 1.03362 1.21084 0.97774 0.94897 1.00765 1.21567 0.95981 0.99898 0.99020 1.17994 0.93547 0.91849 0.90285 1.19823 0.98398 0.93835 1.40808 0.90537 1.26778 1.01489 0.98264 0.91334 1.69878 1.29324 1.11149 1.34650 0.85135 0.77322 0.78062 0.79042 1.18116 1.18721 1.18768 1.20596 0.96165 0.95672 1.01984 0.91103 0.91542 0.93210 0.92570 0.89168 0.89165 0.91422 0.81781 0.85322 0.74973 0.76772 0.85728 0.86043 0.87189 0.89990 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.14 -2.71 6.26 30.60 0.19 -2.52 16 3 C 0.12 3.09 5.33 86.38 0.46 3.55 16 4 N -0.97 -28.57 2.27 -519.82 -1.18 -29.75 16 5 C 0.09 2.08 6.16 85.63 0.53 2.61 16 6 C 0.47 13.72 8.17 87.66 0.72 14.44 16 7 N -0.84 -16.66 8.87 -173.53 -1.54 -18.20 16 8 O -0.56 -23.61 16.61 -3.04 -0.05 -23.66 16 9 S 2.71 105.41 5.64 -56.49 -0.32 105.09 16 10 O -0.98 -39.78 16.24 -128.00 -2.08 -41.85 16 11 O -0.99 -40.67 15.82 -128.00 -2.02 -42.70 16 12 C -0.63 -30.13 5.62 22.22 0.12 -30.01 16 13 C -0.15 -7.10 9.53 22.46 0.21 -6.89 16 14 C -0.13 -6.26 10.02 22.22 0.22 -6.03 16 15 C -0.14 -8.04 8.70 22.73 0.20 -7.84 16 16 C 0.07 3.79 5.58 -21.29 -0.12 3.67 16 17 C -0.50 -27.96 9.05 23.46 0.21 -27.74 16 18 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 19 C 0.04 1.87 5.14 85.25 0.44 2.31 16 20 N -0.82 -44.14 10.95 21.83 0.24 -43.90 16 21 Si 0.98 38.76 29.60 68.60 2.03 40.79 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 C -0.12 -6.50 8.96 22.73 0.20 -6.30 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 32 H 0.07 1.94 7.61 -2.39 -0.02 1.93 16 33 H 0.16 1.84 8.11 -2.39 -0.02 1.82 16 34 H 0.13 2.73 6.91 -2.39 -0.02 2.71 16 35 H 0.42 4.34 8.83 -92.71 -0.82 3.52 16 36 H 0.40 8.45 8.93 -92.71 -0.83 7.63 16 37 H 0.12 5.23 7.61 -2.91 -0.02 5.21 16 38 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 39 H 0.11 6.23 6.15 -2.91 -0.02 6.21 16 40 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 41 H 0.10 5.15 7.60 -2.91 -0.02 5.13 16 Total: -1.00 -78.95 360.59 -1.40 -80.35 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.57 Total: 36.24 kcal Atomic # 6 Polarization: -66.52 SS G_CDS: 4.10 Total: -62.41 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -2.48 Total: -91.84 kcal Atomic # 8 Polarization: -104.06 SS G_CDS: -4.15 Total: -108.21 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 16 Polarization: 105.41 SS G_CDS: -0.32 Total: 105.09 kcal Total: -78.95 -1.40 -80.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589934737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.174 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds