Wall clock time and date at job start Fri Apr 10 2020 18:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47353 * 2 1 4 4 N 1.46498 * 109.47491 * 120.00263 * 2 1 3 5 5 S 1.65593 * 120.00106 * 263.95751 * 4 2 1 6 6 O 1.42105 * 106.40167 * 311.93853 * 5 4 2 7 7 O 1.42104 * 106.40153 * 179.02063 * 5 4 2 8 8 C 1.76201 * 107.22022 * 65.47840 * 5 4 2 9 9 C 1.37637 * 120.12805 * 243.86106 * 8 5 4 10 10 C 1.38618 * 120.24888 * 180.31934 * 9 8 5 11 11 C 1.38654 * 120.49985 * 359.66960 * 10 9 8 12 12 C 1.37601 * 120.24880 * 0.02562 * 11 10 9 13 13 C 1.40698 * 120.12797 * 63.55260 * 8 5 4 14 14 C 1.41401 * 120.24172 * 359.97438 * 13 8 5 15 15 H 1.07994 * 120.00314 * 30.21903 * 14 13 8 16 16 C 1.39943 * 119.99551 * 210.22143 * 14 13 8 17 17 N 1.30824 * 119.99682 * 193.40327 * 16 14 13 18 18 Si 1.86797 * 120.00387 * 13.40648 * 16 14 13 19 19 H 1.48500 * 109.47235 * 266.94260 * 18 16 14 20 20 H 1.48507 * 109.47211 * 26.94129 * 18 16 14 21 21 H 1.48500 * 109.47507 * 146.94071 * 18 16 14 22 22 C 1.50706 * 109.47030 * 240.00292 * 2 1 3 23 23 O 1.21280 * 120.00122 * 257.25479 * 22 2 1 24 24 N 1.34776 * 119.99773 * 77.25902 * 22 2 1 25 25 C 1.46498 * 119.99739 * 184.82515 * 24 22 2 26 26 C 1.46501 * 120.00501 * 4.82326 * 24 22 2 27 27 H 1.08998 * 109.47377 * 305.53534 * 1 2 3 28 28 H 1.09000 * 109.47220 * 65.54019 * 1 2 3 29 29 H 1.09004 * 109.46945 * 185.53524 * 1 2 3 30 30 H 0.97003 * 119.99867 * 83.95180 * 4 2 1 31 31 H 1.08006 * 119.87920 * 0.02562 * 9 8 5 32 32 H 1.08001 * 119.74775 * 179.69309 * 10 9 8 33 33 H 1.08001 * 119.88067 * 180.02562 * 11 10 9 34 34 H 1.07998 * 120.12727 * 180.02562 * 12 11 10 35 35 H 0.97005 * 119.99628 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47237 * 90.00466 * 25 24 22 37 37 H 1.09007 * 109.47067 * 209.99556 * 25 24 22 38 38 H 1.08996 * 109.47721 * 330.00114 * 25 24 22 39 39 H 1.09010 * 109.46704 * 3.95837 * 26 24 22 40 40 H 1.08999 * 109.47259 * 123.95496 * 26 24 22 41 41 H 1.08998 * 109.47437 * 243.96229 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4367 0.1792 2.5416 6 8 3.2710 1.2379 2.0916 7 8 2.8422 -0.7671 3.5211 8 6 0.9659 0.9310 3.1549 9 6 0.8470 2.3021 3.1737 10 6 -0.3063 2.8964 3.6617 11 6 -1.3548 2.1189 4.1296 12 6 -1.2603 0.7462 4.1145 13 6 -0.0941 0.1320 3.6212 14 6 0.0140 -1.2777 3.6001 15 1 0.9807 -1.7469 3.7079 16 6 -1.1318 -2.0649 3.4395 17 7 -1.0813 -3.3501 3.6791 18 14 -2.7333 -1.2809 2.8831 19 1 -3.5397 -0.9048 4.0720 20 1 -2.4375 -0.0664 2.0812 21 1 -3.4960 -2.2480 2.0535 22 6 2.0323 -0.7104 -1.2306 23 8 2.4529 -1.8448 -1.1467 24 7 2.0142 -0.0849 -2.4243 25 6 2.4026 -0.8095 -3.6368 26 6 1.6061 1.3195 -2.5093 27 1 -0.3634 0.5973 0.8362 28 1 -0.3634 0.4255 -0.9354 29 1 -0.3633 -1.0229 0.0991 30 1 2.0966 -1.6575 1.1999 31 1 1.6572 2.9175 2.8113 32 1 -0.3890 3.9731 3.6773 33 1 -2.2489 2.5924 4.5073 34 1 -2.0783 0.1426 4.4789 35 1 -1.8755 -3.8958 3.5674 36 1 1.5233 -1.2810 -4.0757 37 1 2.8367 -0.1122 -4.3534 38 1 3.1367 -1.5744 -3.3836 39 1 1.4232 1.7061 -1.5066 40 1 2.3975 1.8998 -2.9837 41 1 0.6939 1.3977 -3.1008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601366561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:42 Heat of formation + Delta-G solvation = -107.869581 kcal Electronic energy + Delta-G solvation = -27268.607223 eV Core-core repulsion = 23467.591689 eV Total energy + Delta-G solvation = -3801.015534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16650 -39.60303 -38.17038 -36.77836 -36.68520 -36.49433 -35.60920 -32.47203 -31.82209 -31.12402 -28.79895 -27.31730 -27.17442 -24.45730 -23.69574 -22.92989 -20.55685 -20.48005 -19.53537 -19.03976 -18.38754 -17.74675 -17.34323 -17.16457 -16.70218 -16.46334 -15.88095 -15.69917 -15.47386 -15.19019 -14.92179 -14.56716 -14.54056 -14.15221 -13.79232 -13.58430 -13.45142 -13.33769 -13.21459 -13.13501 -13.06806 -12.93077 -12.90826 -12.79634 -12.72067 -12.58101 -12.38910 -12.10131 -11.65534 -11.27578 -11.10701 -10.93380 -10.41478 -9.89857 -9.71268 -9.56181 -8.97826 -6.73499 -0.28311 0.36458 0.82476 1.24045 1.37495 1.45222 1.47001 1.92159 2.04682 2.27371 2.52541 2.90541 3.34507 3.39648 3.72673 3.81088 4.06299 4.20372 4.27761 4.36496 4.40260 4.47284 4.55801 4.66982 4.73869 4.75987 4.79668 4.89911 4.93682 4.97425 5.02640 5.23523 5.30845 5.40544 5.50073 5.59307 5.72636 5.87761 6.00445 6.10115 6.25793 6.31958 6.54518 6.69722 7.03381 8.06884 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.006091 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.523740 B = 4595.844348 C = 5137.729795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.131 0.869 4 N -1.098 6.098 5 S 2.717 3.283 6 O -0.999 6.999 7 O -1.008 7.008 8 C -0.775 4.775 9 C 0.007 3.993 10 C -0.240 4.240 11 C -0.036 4.036 12 C -0.259 4.259 13 C 0.159 3.841 14 C -0.483 4.483 15 H 0.087 0.913 16 C 0.054 3.946 17 N -0.825 5.825 18 Si 0.956 3.044 19 H -0.259 1.259 20 H -0.225 1.225 21 H -0.281 1.281 22 C 0.510 3.490 23 O -0.574 6.574 24 N -0.616 5.616 25 C 0.081 3.919 26 C 0.057 3.943 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.419 0.581 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.298 0.702 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 11.757 -13.856 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.148 0.852 4 N -0.857 5.857 5 S 2.814 3.186 6 O -0.989 6.989 7 O -0.998 6.998 8 C -0.870 4.870 9 C -0.013 4.013 10 C -0.260 4.260 11 C -0.054 4.054 12 C -0.279 4.279 13 C 0.154 3.846 14 C -0.510 4.510 15 H 0.104 0.896 16 C -0.164 4.164 17 N -0.448 5.448 18 Si 0.778 3.222 19 H -0.184 1.184 20 H -0.147 1.147 21 H -0.208 1.208 22 C 0.296 3.704 23 O -0.453 6.453 24 N -0.349 5.349 25 C -0.061 4.061 26 C -0.084 4.084 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.254 0.746 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.746 11.109 -13.504 17.573 hybrid contribution -1.093 -1.039 0.384 1.556 sum -2.838 10.070 -13.120 16.781 Atomic orbital electron populations 1.22313 0.91884 1.03519 1.04725 1.20814 0.96572 0.97174 0.83059 0.85191 1.55185 1.83793 1.19947 1.26733 1.00427 0.74084 0.72110 0.71929 1.93430 1.66358 1.57101 1.82015 1.93485 1.83116 1.63442 1.59792 1.29878 1.22624 1.04140 1.30356 1.20760 0.97225 0.91680 0.91599 1.21010 0.94856 0.99937 1.10171 1.21296 0.98211 0.92805 0.93103 1.21340 0.99945 0.95936 1.10661 1.17140 0.90576 0.91844 0.85051 1.20175 0.97317 0.90830 1.42713 0.89550 1.26947 1.03494 0.94819 0.91174 1.69707 1.33569 1.08021 1.33513 0.85683 0.76535 0.79932 0.80048 1.18432 1.14739 1.20836 1.20891 0.77581 0.86399 0.85531 1.90654 1.47996 1.20476 1.86134 1.47836 1.66447 1.14098 1.06545 1.21790 1.00841 0.97868 0.85614 1.22344 1.02557 0.78777 1.04750 0.90606 0.87897 0.92949 0.74605 0.84681 0.83976 0.84421 0.87784 0.89083 0.91819 0.87737 0.92722 0.89799 0.89254 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.85 9.26 71.98 0.67 -4.18 16 2 C 0.13 4.26 2.47 44.25 0.11 4.37 16 3 H 0.13 3.49 5.82 -2.39 -0.01 3.48 16 4 N -1.10 -43.83 5.18 -172.52 -0.89 -44.72 16 5 S 2.72 119.72 5.04 -56.49 -0.28 119.44 16 6 O -1.00 -42.67 16.29 -128.00 -2.09 -44.76 16 7 O -1.01 -53.39 15.80 -128.00 -2.02 -55.41 16 8 C -0.77 -33.37 5.07 22.73 0.12 -33.25 16 9 C 0.01 0.26 9.53 22.22 0.21 0.47 16 10 C -0.24 -7.81 10.05 22.46 0.23 -7.58 16 11 C -0.04 -1.24 10.02 22.22 0.22 -1.02 16 12 C -0.26 -10.94 7.03 22.73 0.16 -10.78 16 13 C 0.16 7.45 4.93 -21.29 -0.10 7.35 16 14 C -0.48 -25.42 8.67 23.46 0.20 -25.21 16 15 H 0.09 5.13 5.73 -2.91 -0.02 5.12 16 16 C 0.05 2.72 5.46 85.26 0.47 3.19 16 17 N -0.82 -43.38 13.93 21.83 0.30 -43.08 16 18 Si 0.96 38.32 24.41 68.60 1.67 39.99 16 19 H -0.26 -9.88 6.67 99.48 0.66 -9.22 16 20 H -0.22 -8.46 6.70 99.48 0.67 -7.79 16 21 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 22 C 0.51 16.05 6.93 87.66 0.61 16.66 16 23 O -0.57 -22.85 15.58 -3.03 -0.05 -22.90 16 24 N -0.62 -13.43 3.27 -871.87 -2.85 -16.29 16 25 C 0.08 1.43 10.52 127.77 1.34 2.78 16 26 C 0.06 0.74 9.77 127.77 1.25 1.99 16 27 H 0.08 2.41 7.02 -2.39 -0.02 2.39 16 28 H 0.10 2.12 7.18 -2.39 -0.02 2.10 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.42 17.89 8.12 -96.75 -0.79 17.11 16 31 H 0.14 4.34 7.33 -2.91 -0.02 4.32 16 32 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.10 4.37 4.41 -2.91 -0.01 4.35 16 35 H 0.30 14.03 8.30 -92.70 -0.77 13.26 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.09 8.07 -2.38 -0.02 1.07 16 38 H 0.05 1.24 7.36 -2.39 -0.02 1.22 16 39 H 0.08 1.14 5.11 -2.38 -0.01 1.12 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -72.59 342.81 -0.52 -73.12 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: 0.21 Total: 39.84 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 5.47 Total: -45.23 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.44 Total: -104.09 kcal Atomic # 8 Polarization: -118.91 SS G_CDS: -4.15 Total: -123.06 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.67 Total: 39.99 kcal Atomic # 16 Polarization: 119.72 SS G_CDS: -0.28 Total: 119.44 kcal Total: -72.59 -0.52 -73.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601366561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.750 kcal (2) G-P(sol) polarization free energy of solvation -72.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds