Wall clock time and date at job start Fri Apr 10 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99529 * 2 1 4 4 O 1.21277 * 120.00083 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99941 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47002 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47418 * 55.00233 * 6 5 3 8 8 C 1.52994 * 109.47143 * 175.00135 * 6 5 3 9 9 N 1.46499 * 109.47316 * 295.00217 * 6 5 3 10 10 S 1.65599 * 120.00117 * 144.36148 * 9 6 5 11 11 O 1.42102 * 106.40411 * 311.79502 * 10 9 6 12 12 O 1.42099 * 106.40424 * 178.87308 * 10 9 6 13 13 C 1.76205 * 107.21827 * 65.33410 * 10 9 6 14 14 C 1.37640 * 120.12953 * 244.21569 * 13 10 9 15 15 C 1.38618 * 120.24692 * 180.31882 * 14 13 10 16 16 C 1.38653 * 120.49948 * 359.67320 * 15 14 13 17 17 C 1.37600 * 120.24982 * 359.97438 * 16 15 14 18 18 C 1.40700 * 120.12790 * 63.90894 * 13 10 9 19 19 C 1.41402 * 120.24188 * 359.97438 * 18 13 10 20 20 H 1.08000 * 120.00076 * 335.83933 * 19 18 13 21 21 C 1.39941 * 119.99944 * 155.84096 * 19 18 13 22 22 N 1.30824 * 120.00150 * 331.61517 * 21 19 18 23 23 Si 1.86799 * 119.99951 * 151.61756 * 21 19 18 24 24 H 1.48504 * 109.47029 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.46898 * 299.99927 * 23 21 19 26 26 H 1.48494 * 109.47347 * 59.99977 * 23 21 19 27 27 H 1.09000 * 109.47000 * 299.98827 * 1 2 3 28 28 H 1.08990 * 109.47300 * 59.99854 * 1 2 3 29 29 H 1.09003 * 109.46574 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00429 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46946 * 60.00272 * 5 3 2 32 32 H 1.08999 * 109.46875 * 300.00130 * 5 3 2 33 33 H 1.08999 * 109.47878 * 180.02562 * 8 6 5 34 34 H 1.09006 * 109.47125 * 300.00239 * 8 6 5 35 35 H 1.09001 * 109.47394 * 59.99899 * 8 6 5 36 36 H 0.96997 * 119.99887 * 324.36227 * 9 6 5 37 37 H 1.07995 * 119.87692 * 0.02562 * 14 13 10 38 38 H 1.07995 * 119.74673 * 179.69291 * 15 14 13 39 39 H 1.07996 * 119.87524 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.12494 * 180.02562 * 17 16 15 41 41 H 0.97001 * 119.99906 * 355.64821 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 0.0005 5 6 3.6459 1.1674 -0.0006 6 6 4.1557 2.6099 0.0002 7 1 3.7214 3.1484 0.8425 8 6 5.6805 2.6118 0.1253 9 7 3.7676 3.2657 -1.2510 10 16 3.3555 4.8696 -1.2519 11 8 2.4326 5.0475 -0.1861 12 8 3.0601 5.2073 -2.6003 13 6 4.8001 5.7796 -0.8162 14 6 4.8310 6.5101 0.3499 15 6 5.9638 7.2321 0.6918 16 6 7.0796 7.2222 -0.1312 17 6 7.0737 6.4932 -1.2982 18 6 5.9289 5.7571 -1.6559 19 6 5.9112 5.0046 -2.8529 20 1 5.2405 4.1640 -2.9524 21 6 6.7629 5.3491 -3.9086 22 7 7.1462 6.5906 -4.0613 23 14 7.3522 4.0363 -5.0997 24 1 8.2377 4.6544 -6.1191 25 1 8.1060 2.9954 -4.3556 26 1 6.1820 3.4155 -5.7707 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.9500 -0.8400 -0.0004 31 1 4.0089 0.6538 -0.8909 32 1 4.0095 0.6534 0.8891 33 1 6.0439 3.6394 0.1263 34 1 5.9693 2.1238 1.0562 35 1 6.1149 2.0734 -0.7171 36 1 3.7520 2.7605 -2.0788 37 1 3.9677 6.5245 0.9987 38 1 5.9774 7.8065 1.6063 39 1 7.9569 7.7881 0.1452 40 1 7.9441 6.4866 -1.9376 41 1 6.7909 7.2827 -3.4820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601431157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:52 Heat of formation + Delta-G solvation = -133.460853 kcal Electronic energy + Delta-G solvation = -26929.460341 eV Core-core repulsion = 23127.335086 eV Total energy + Delta-G solvation = -3802.125255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69670 -39.60124 -38.02262 -37.29643 -36.60168 -35.88524 -35.44359 -32.01059 -31.69198 -31.20913 -29.48982 -27.16888 -26.76984 -23.54726 -23.01714 -22.57443 -21.29332 -20.41787 -20.05244 -18.64499 -18.13771 -17.81748 -17.24285 -16.64859 -16.56121 -16.42764 -15.85207 -15.70456 -15.34683 -15.04536 -14.92638 -14.41342 -14.29037 -14.07839 -13.90246 -13.66113 -13.41049 -13.09063 -13.03572 -12.99275 -12.86238 -12.80477 -12.70918 -12.67168 -12.29151 -12.20116 -11.97488 -11.81844 -11.59494 -11.20114 -10.94377 -10.80575 -10.22275 -10.02276 -9.94574 -9.65025 -9.36103 -6.67805 -0.09829 0.47420 0.90288 1.51280 1.65412 1.79352 1.79406 2.30516 2.37717 2.40986 2.58411 3.06636 3.38390 3.73683 3.94092 3.94514 4.23711 4.26964 4.35449 4.45426 4.48130 4.62249 4.63891 4.67532 4.78660 4.81710 4.87687 4.97691 5.04095 5.12637 5.29401 5.37217 5.51632 5.55297 5.56049 5.63659 5.67697 5.87355 6.00631 6.18687 6.32475 6.57215 6.69125 6.77790 7.45026 7.85677 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.005288 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.031831 B = 5293.921691 C = 6229.222307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.726 5.726 3 C 0.491 3.509 4 O -0.572 6.572 5 C -0.134 4.134 6 C 0.164 3.836 7 H 0.068 0.932 8 C -0.167 4.167 9 N -1.096 6.096 10 S 2.717 3.283 11 O -1.005 7.005 12 O -1.016 7.016 13 C -0.794 4.794 14 C -0.001 4.001 15 C -0.265 4.265 16 C -0.052 4.052 17 C -0.237 4.237 18 C 0.151 3.849 19 C -0.519 4.519 20 H 0.092 0.908 21 C 0.009 3.991 22 N -0.789 5.789 23 Si 1.107 2.893 24 H -0.272 1.272 25 H -0.243 1.243 26 H -0.259 1.259 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.113 0.887 30 H 0.420 0.580 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -17.742 6.290 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.380 5.380 3 C 0.279 3.721 4 O -0.450 6.450 5 C -0.175 4.175 6 C 0.056 3.944 7 H 0.087 0.913 8 C -0.226 4.226 9 N -0.856 5.856 10 S 2.814 3.186 11 O -0.996 6.996 12 O -1.006 7.006 13 C -0.888 4.888 14 C -0.021 4.021 15 C -0.285 4.285 16 C -0.071 4.071 17 C -0.257 4.257 18 C 0.146 3.854 19 C -0.545 4.545 20 H 0.110 0.890 21 C -0.211 4.211 22 N -0.409 5.409 23 Si 0.922 3.078 24 H -0.196 1.196 25 H -0.167 1.167 26 H -0.183 1.183 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.131 0.869 30 H 0.257 0.743 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.555 -16.753 4.961 17.541 hybrid contribution -0.376 0.695 1.184 1.423 sum -1.931 -16.058 6.145 17.302 Atomic orbital electron populations 1.21581 0.79812 1.03875 1.00764 1.45728 1.07846 1.08746 1.75691 1.21401 0.91704 0.83672 0.75369 1.90864 1.71370 1.33041 1.49763 1.22055 0.90048 0.97013 1.08416 1.20576 0.95139 0.93681 0.84969 0.91336 1.22304 0.93837 1.02636 1.03822 1.55152 1.86598 1.27593 1.16226 1.00343 0.73534 0.73129 0.71628 1.93440 1.61923 1.86221 1.57977 1.93452 1.85361 1.83665 1.38141 1.30063 1.19441 1.28369 1.10929 1.20580 0.97145 0.91621 0.92753 1.20796 0.95272 1.09249 1.03180 1.21151 0.97601 0.95124 0.93180 1.21352 0.98422 1.06299 0.99638 1.17168 0.89139 0.88062 0.91024 1.21109 1.20502 1.13954 0.98975 0.88974 1.28595 0.91736 1.00678 1.00118 1.70578 1.34630 1.02158 1.33580 0.83195 0.77939 0.72703 0.73998 1.19604 1.16691 1.18298 0.93854 0.94281 0.86881 0.74265 0.85161 0.83697 0.94219 0.88955 0.90581 0.74945 0.86755 0.85575 0.85672 0.88063 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.70 127.77 1.37 2.75 16 2 N -0.73 -11.81 5.71 -484.52 -2.77 -14.58 16 3 C 0.49 12.40 7.69 87.66 0.67 13.08 16 4 O -0.57 -22.01 15.04 -3.02 -0.05 -22.05 16 5 C -0.13 -2.47 5.31 29.85 0.16 -2.31 16 6 C 0.16 4.78 2.48 44.99 0.11 4.90 16 7 H 0.07 2.36 7.30 -2.39 -0.02 2.34 16 8 C -0.17 -4.45 9.52 71.98 0.69 -3.76 16 9 N -1.10 -40.28 3.72 -169.40 -0.63 -40.91 16 10 S 2.72 131.00 4.93 -56.49 -0.28 130.72 16 11 O -1.01 -52.14 15.99 -127.56 -2.04 -54.18 16 12 O -1.02 -56.14 16.58 -128.00 -2.12 -58.26 16 13 C -0.79 -39.23 4.94 22.73 0.11 -39.12 16 14 C 0.00 -0.06 9.53 22.22 0.21 0.16 16 15 C -0.26 -11.30 10.05 22.46 0.23 -11.07 16 16 C -0.05 -2.25 10.02 22.22 0.22 -2.03 16 17 C -0.24 -11.58 8.01 22.73 0.18 -11.40 16 18 C 0.15 7.68 4.91 -21.29 -0.10 7.58 16 19 C -0.52 -26.10 7.70 23.46 0.18 -25.92 16 20 H 0.09 4.38 5.58 -2.91 -0.02 4.37 16 21 C 0.01 0.43 4.87 85.26 0.42 0.84 16 22 N -0.79 -40.95 12.34 21.83 0.27 -40.68 16 23 Si 1.11 39.76 30.02 68.60 2.06 41.82 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.24 -7.65 7.11 99.48 0.71 -6.94 16 26 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.42 3.09 8.83 -92.71 -0.82 2.27 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.38 6.67 -2.39 -0.02 1.36 16 34 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.42 13.56 8.53 -96.75 -0.83 12.73 16 37 H 0.11 5.07 7.33 -2.91 -0.02 5.05 16 38 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.10 5.02 6.49 -2.91 -0.02 5.01 16 41 H 0.29 15.71 6.80 -92.71 -0.63 15.08 16 Total: -1.00 -80.59 352.02 -1.54 -82.12 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -0.43 Total: 42.30 kcal Atomic # 6 Polarization: -70.74 SS G_CDS: 4.44 Total: -66.30 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -3.13 Total: -96.17 kcal Atomic # 8 Polarization: -130.28 SS G_CDS: -4.21 Total: -134.49 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.06 Total: 41.82 kcal Atomic # 16 Polarization: 131.00 SS G_CDS: -0.28 Total: 130.72 kcal Total: -80.59 -1.54 -82.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601431157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.337 kcal (2) G-P(sol) polarization free energy of solvation -80.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds