Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 S 1.65608 * 120.00013 * 2 1 4 4 O 1.42100 * 106.39996 * 310.92287 * 3 2 1 5 5 O 1.42102 * 106.39686 * 178.00330 * 3 2 1 6 6 C 1.76199 * 107.21511 * 64.46515 * 3 2 1 7 7 C 1.38126 * 120.03514 * 244.50988 * 6 3 2 8 8 C 1.38267 * 120.07376 * 179.70585 * 7 6 3 9 9 C 1.38310 * 120.14687 * 0.54737 * 8 7 6 10 10 C 1.38077 * 120.07229 * 359.45500 * 9 8 7 11 11 C 1.38889 * 120.03837 * 64.48697 * 6 3 2 12 12 N 1.39669 * 120.07369 * 0.04672 * 11 6 3 13 13 C 1.47444 * 111.00431 * 120.48683 * 12 11 6 14 14 C 1.54312 * 107.23832 * 123.25144 * 13 12 11 15 15 C 1.55139 * 103.01804 * 22.28527 * 14 13 12 16 16 O 1.42899 * 110.99412 * 82.47467 * 15 14 13 17 17 C 1.50701 * 110.99294 * 206.25574 * 15 14 13 18 18 H 1.07999 * 120.00299 * 118.54084 * 17 15 14 19 19 C 1.37884 * 119.99834 * 298.54693 * 17 15 14 20 20 N 1.31511 * 119.99712 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99791 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47358 * 60.00291 * 21 19 17 23 23 H 1.48507 * 109.46726 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47190 * 299.99696 * 21 19 17 25 25 C 1.47849 * 110.99647 * 241.32172 * 12 11 6 26 26 H 1.09006 * 109.47329 * 175.21203 * 1 2 3 27 27 H 1.09006 * 109.46912 * 295.21033 * 1 2 3 28 28 H 1.09005 * 109.47363 * 55.20942 * 1 2 3 29 29 H 0.96999 * 120.00176 * 180.02562 * 2 1 3 30 30 H 1.08005 * 119.96296 * 359.97438 * 7 6 3 31 31 H 1.07998 * 119.92229 * 180.29498 * 8 7 6 32 32 H 1.07997 * 119.96045 * 179.72309 * 9 8 7 33 33 H 1.08002 * 120.03381 * 180.29603 * 10 9 8 34 34 H 1.08995 * 109.88769 * 242.66397 * 13 12 11 35 35 H 1.09004 * 109.88263 * 3.84710 * 13 12 11 36 36 H 1.08998 * 110.70614 * 140.66589 * 14 13 12 37 37 H 1.09003 * 110.70588 * 263.73029 * 14 13 12 38 38 H 0.96702 * 113.99672 * 61.45204 * 16 15 14 39 39 H 0.97004 * 119.99759 * 179.97438 * 20 19 17 40 40 H 1.08998 * 110.37451 * 332.47163 * 25 12 11 41 41 H 1.09007 * 110.37132 * 94.80984 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7203 2.2281 -1.0300 5 8 3.6734 1.1004 0.0475 6 6 1.9254 2.2486 1.5187 7 6 1.2404 3.4480 1.5118 8 6 0.9462 4.0847 2.7034 9 6 1.3464 3.5290 3.9051 10 6 2.0315 2.3303 3.9190 11 6 2.3238 1.6850 2.7239 12 7 3.0171 0.4726 2.7344 13 6 4.3385 0.6249 3.3704 14 6 4.4046 -0.3852 4.5352 15 6 3.3419 -1.4442 4.1400 16 8 3.8816 -2.3909 3.2157 17 6 2.7917 -2.1380 5.3595 18 1 1.7400 -2.0648 5.5940 19 6 3.6311 -2.8662 6.1758 20 7 4.9116 -2.9556 5.8900 21 14 2.9492 -3.7256 7.6877 22 1 1.9119 -4.7048 7.2749 23 1 4.0477 -4.4357 8.3909 24 1 2.3461 -2.7200 8.5989 25 6 2.2592 -0.5647 3.4663 26 1 -0.3634 -1.0241 -0.0858 27 1 -0.3633 0.4378 0.9298 28 1 -0.3634 0.5864 -0.8440 29 1 1.9499 -0.8400 -0.0004 30 1 0.9303 3.8868 0.5749 31 1 0.4063 5.0200 2.6955 32 1 1.1189 4.0312 4.8338 33 1 2.3396 1.8946 4.8580 34 1 5.1251 0.4092 2.6474 35 1 4.4512 1.6395 3.7526 36 1 5.3944 -0.8372 4.5976 37 1 4.1417 0.0954 5.4775 38 1 4.6279 -2.8984 3.5631 39 1 5.5022 -3.4676 6.4645 40 1 1.6194 -0.1062 4.2202 41 1 1.6642 -1.1598 2.7734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603397098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = -80.018457 kcal Electronic energy + Delta-G solvation = -27251.300102 eV Core-core repulsion = 23451.492283 eV Total energy + Delta-G solvation = -3799.807818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05818 -37.75015 -36.82007 -35.48412 -34.86056 -34.63797 -32.21587 -31.34723 -30.81391 -28.29287 -27.92414 -25.80246 -24.80655 -23.15369 -22.41868 -20.25124 -19.66543 -19.28009 -17.96436 -17.29121 -17.00900 -16.31278 -15.97375 -15.38672 -14.96268 -14.85561 -14.64779 -14.22835 -14.17973 -13.79045 -13.67141 -13.29125 -12.81589 -12.65096 -12.51211 -12.25273 -11.87272 -11.82518 -11.76554 -11.65229 -11.48057 -11.34977 -11.32639 -11.13204 -10.88555 -10.62205 -10.53147 -10.44093 -10.03748 -9.42613 -9.34017 -9.29168 -8.69910 -8.64346 -8.18891 -8.03517 -6.29256 -4.38497 0.70144 0.97736 1.29199 3.17163 3.22809 3.23306 3.25357 3.55696 4.04027 4.16892 4.29959 4.67453 4.92411 4.97750 5.00479 5.14715 5.15973 5.40962 5.50016 5.52100 5.70284 5.76172 5.76749 5.83591 5.92751 5.94143 6.01720 6.14305 6.27866 6.35965 6.37572 6.50921 6.73909 6.81687 6.94769 7.22258 7.23797 7.35841 7.40554 7.66424 7.73435 8.03858 8.63282 9.30534 9.43530 10.77494 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.004542 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.117826 B = 6162.733835 C = 6743.412012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.110 6.110 3 S 2.711 3.289 4 O -0.980 6.980 5 O -0.939 6.939 6 C -0.666 4.666 7 C -0.024 4.024 8 C -0.156 4.156 9 C -0.058 4.058 10 C -0.172 4.172 11 C 0.207 3.793 12 N -0.510 5.510 13 C 0.051 3.949 14 C -0.145 4.145 15 C 0.256 3.744 16 O -0.577 6.577 17 C -0.540 4.540 18 H 0.060 0.940 19 C 0.074 3.926 20 N -0.892 5.892 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.062 3.938 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.424 0.576 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.379 0.621 39 H 0.268 0.732 40 H 0.055 0.945 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 9.846 -6.074 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.870 5.870 3 S 2.798 3.202 4 O -0.970 6.970 5 O -0.929 6.929 6 C -0.753 4.753 7 C -0.044 4.044 8 C -0.175 4.175 9 C -0.077 4.077 10 C -0.192 4.192 11 C 0.111 3.889 12 N -0.232 5.232 13 C -0.074 4.074 14 C -0.184 4.184 15 C 0.215 3.785 16 O -0.385 6.385 17 C -0.578 4.578 18 H 0.078 0.922 19 C -0.129 4.129 20 N -0.530 5.530 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.062 4.062 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.260 0.740 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.451 10.298 -7.565 14.792 hybrid contribution -0.154 -0.603 3.072 3.135 sum -7.605 9.695 -4.493 13.115 Atomic orbital electron populations 1.21395 0.79260 1.03973 1.01234 1.55121 1.15488 1.24670 1.91731 1.01380 0.73232 0.72449 0.73151 1.93532 1.79862 1.69591 1.53986 1.93610 1.30135 1.82546 1.86632 1.30822 1.15439 1.09432 1.19611 1.20900 0.92181 0.91997 0.99283 1.21198 1.02812 1.00990 0.92468 1.21335 0.93894 0.94287 0.98195 1.22012 1.01257 0.96810 0.99159 1.18776 0.88878 0.90168 0.91058 1.61433 1.03734 1.03195 1.54886 1.22968 0.89134 0.98467 0.96812 1.23321 1.03307 0.96747 0.95017 1.19476 0.87571 0.85460 0.85971 1.86133 1.53428 1.55198 1.43739 1.21442 0.95322 1.32531 1.08501 0.92171 1.24983 0.94736 0.95437 0.97759 1.69720 1.03339 1.40875 1.39113 0.86531 0.78667 0.79732 0.82322 1.20032 1.21102 1.20237 1.23216 0.96503 0.91121 0.95400 0.90058 0.92843 0.91774 0.74036 0.84131 0.85446 0.85613 0.84846 0.89909 0.93900 0.89854 0.92478 0.77151 0.92184 0.92685 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.17 59.84 0.67 1.60 16 2 N -1.11 -14.84 6.19 -16.63 -0.10 -14.95 16 3 S 2.71 42.90 5.27 -107.50 -0.57 42.33 16 4 O -0.98 -16.29 16.62 -57.17 -0.95 -17.24 16 5 O -0.94 -18.10 17.24 -57.17 -0.99 -19.08 16 6 C -0.67 -10.27 5.89 -39.38 -0.23 -10.50 16 7 C -0.02 -0.31 9.54 -39.61 -0.38 -0.69 16 8 C -0.16 -1.79 10.04 -39.54 -0.40 -2.19 16 9 C -0.06 -0.71 10.04 -39.61 -0.40 -1.11 16 10 C -0.17 -2.60 7.80 -39.38 -0.31 -2.90 16 11 C 0.21 3.48 4.59 -83.79 -0.38 3.10 16 12 N -0.51 -9.61 3.84 -167.92 -0.64 -10.26 16 13 C 0.05 1.01 6.53 -2.84 -0.02 1.00 16 14 C -0.14 -3.18 5.37 -24.91 -0.13 -3.31 16 15 C 0.26 5.97 0.87 -89.63 -0.08 5.89 16 16 O -0.58 -14.29 13.16 -35.23 -0.46 -14.76 16 17 C -0.54 -13.65 8.27 -34.44 -0.28 -13.93 16 18 H 0.06 1.51 7.79 -52.49 -0.41 1.10 16 19 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 20 N -0.89 -22.85 10.75 55.43 0.60 -22.25 16 21 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 25 C 0.06 1.26 5.73 -2.30 -0.01 1.24 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 29 H 0.42 5.59 8.96 -34.48 -0.31 5.28 16 30 H 0.14 1.60 7.33 -52.48 -0.38 1.22 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 2.07 7.74 -52.49 -0.41 1.66 16 34 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.04 0.78 7.00 -51.93 -0.36 0.41 16 36 H 0.08 1.96 7.54 -51.93 -0.39 1.57 16 37 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 38 H 0.38 9.54 7.56 45.56 0.34 9.89 16 39 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.05 1.08 6.71 -51.93 -0.35 0.73 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -30.26 348.69 -9.71 -39.96 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -4.77 Total: 16.18 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.05 Total: -20.04 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.15 Total: -47.46 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -2.40 Total: -51.08 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 42.90 SS G_CDS: -0.57 Total: 42.33 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.26 -9.71 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603397098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.054 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds