Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 S 1.65608 * 120.00013 * 2 1 4 4 O 1.42100 * 106.39996 * 310.92287 * 3 2 1 5 5 O 1.42102 * 106.39686 * 178.00330 * 3 2 1 6 6 C 1.76199 * 107.21511 * 64.46515 * 3 2 1 7 7 C 1.38126 * 120.03514 * 244.50988 * 6 3 2 8 8 C 1.38267 * 120.07376 * 179.70585 * 7 6 3 9 9 C 1.38310 * 120.14687 * 0.54737 * 8 7 6 10 10 C 1.38077 * 120.07229 * 359.45500 * 9 8 7 11 11 C 1.38889 * 120.03837 * 64.48697 * 6 3 2 12 12 N 1.39669 * 120.07369 * 0.04672 * 11 6 3 13 13 C 1.47444 * 111.00431 * 120.48683 * 12 11 6 14 14 C 1.54312 * 107.23832 * 123.25144 * 13 12 11 15 15 C 1.55139 * 103.01804 * 22.28527 * 14 13 12 16 16 O 1.42899 * 110.99412 * 82.47467 * 15 14 13 17 17 C 1.50701 * 110.99294 * 206.25574 * 15 14 13 18 18 H 1.07999 * 120.00299 * 118.54084 * 17 15 14 19 19 C 1.37884 * 119.99834 * 298.54693 * 17 15 14 20 20 N 1.31511 * 119.99712 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99791 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47358 * 60.00291 * 21 19 17 23 23 H 1.48507 * 109.46726 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47190 * 299.99696 * 21 19 17 25 25 C 1.47849 * 110.99647 * 241.32172 * 12 11 6 26 26 H 1.09006 * 109.47329 * 175.21203 * 1 2 3 27 27 H 1.09006 * 109.46912 * 295.21033 * 1 2 3 28 28 H 1.09005 * 109.47363 * 55.20942 * 1 2 3 29 29 H 0.96999 * 120.00176 * 180.02562 * 2 1 3 30 30 H 1.08005 * 119.96296 * 359.97438 * 7 6 3 31 31 H 1.07998 * 119.92229 * 180.29498 * 8 7 6 32 32 H 1.07997 * 119.96045 * 179.72309 * 9 8 7 33 33 H 1.08002 * 120.03381 * 180.29603 * 10 9 8 34 34 H 1.08995 * 109.88769 * 242.66397 * 13 12 11 35 35 H 1.09004 * 109.88263 * 3.84710 * 13 12 11 36 36 H 1.08998 * 110.70614 * 140.66589 * 14 13 12 37 37 H 1.09003 * 110.70588 * 263.73029 * 14 13 12 38 38 H 0.96702 * 113.99672 * 61.45204 * 16 15 14 39 39 H 0.97004 * 119.99759 * 179.97438 * 20 19 17 40 40 H 1.08998 * 110.37451 * 332.47163 * 25 12 11 41 41 H 1.09007 * 110.37132 * 94.80984 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7203 2.2281 -1.0300 5 8 3.6734 1.1004 0.0475 6 6 1.9254 2.2486 1.5187 7 6 1.2404 3.4480 1.5118 8 6 0.9462 4.0847 2.7034 9 6 1.3464 3.5290 3.9051 10 6 2.0315 2.3303 3.9190 11 6 2.3238 1.6850 2.7239 12 7 3.0171 0.4726 2.7344 13 6 4.3385 0.6249 3.3704 14 6 4.4046 -0.3852 4.5352 15 6 3.3419 -1.4442 4.1400 16 8 3.8816 -2.3909 3.2157 17 6 2.7917 -2.1380 5.3595 18 1 1.7400 -2.0648 5.5940 19 6 3.6311 -2.8662 6.1758 20 7 4.9116 -2.9556 5.8900 21 14 2.9492 -3.7256 7.6877 22 1 1.9119 -4.7048 7.2749 23 1 4.0477 -4.4357 8.3909 24 1 2.3461 -2.7200 8.5989 25 6 2.2592 -0.5647 3.4663 26 1 -0.3634 -1.0241 -0.0858 27 1 -0.3633 0.4378 0.9298 28 1 -0.3634 0.5864 -0.8440 29 1 1.9499 -0.8400 -0.0004 30 1 0.9303 3.8868 0.5749 31 1 0.4063 5.0200 2.6955 32 1 1.1189 4.0312 4.8338 33 1 2.3396 1.8946 4.8580 34 1 5.1251 0.4092 2.6474 35 1 4.4512 1.6395 3.7526 36 1 5.3944 -0.8372 4.5976 37 1 4.1417 0.0954 5.4775 38 1 4.6279 -2.8984 3.5631 39 1 5.5022 -3.4676 6.4645 40 1 1.6194 -0.1062 4.2202 41 1 1.6642 -1.1598 2.7734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603397098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = -103.853548 kcal Electronic energy + Delta-G solvation = -27252.333669 eV Core-core repulsion = 23451.492283 eV Total energy + Delta-G solvation = -3800.841385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37984 -39.15672 -38.14724 -36.81497 -36.44454 -35.72528 -34.17251 -32.57251 -32.11635 -29.98935 -29.38024 -26.72980 -26.57756 -24.23286 -23.75002 -21.78494 -21.37015 -20.45357 -19.32748 -18.74603 -18.38083 -17.56839 -17.25666 -16.90140 -16.70062 -16.22776 -15.83908 -15.67627 -15.44240 -15.22641 -14.73284 -14.53545 -14.43399 -13.99472 -13.65341 -13.56880 -13.40576 -13.30339 -13.15787 -13.09691 -12.98073 -12.92613 -12.63077 -12.53479 -12.41615 -12.29169 -12.20594 -11.94081 -11.72271 -11.14894 -10.61287 -10.42240 -10.36768 -10.09624 -9.77593 -9.51523 -8.21162 -6.37323 -0.45539 -0.15165 0.21280 1.41706 1.43895 1.50523 2.11990 2.37612 2.48554 2.83141 2.85607 3.05034 3.52556 3.85949 3.91302 3.98714 4.04190 4.23294 4.28967 4.31457 4.35477 4.38373 4.56623 4.66972 4.69936 4.77674 4.84192 4.95674 5.01403 5.03813 5.12747 5.16976 5.31927 5.35786 5.44137 5.52461 5.70183 5.76211 5.81745 6.15143 6.16920 6.29711 6.68029 7.34411 7.45501 8.83743 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.004542 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.117826 B = 6162.733835 C = 6743.412012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.109 6.109 3 S 2.719 3.281 4 O -0.991 6.991 5 O -0.982 6.982 6 C -0.671 4.671 7 C -0.028 4.028 8 C -0.139 4.139 9 C -0.050 4.050 10 C -0.184 4.184 11 C 0.176 3.824 12 N -0.509 5.509 13 C 0.059 3.941 14 C -0.133 4.133 15 C 0.239 3.761 16 O -0.585 6.585 17 C -0.558 4.558 18 H 0.057 0.943 19 C 0.033 3.967 20 N -0.909 5.909 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.074 3.926 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.424 0.576 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.373 0.627 39 H 0.268 0.732 40 H 0.060 0.940 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 11.688 -5.497 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.871 5.871 3 S 2.809 3.191 4 O -0.981 6.981 5 O -0.972 6.972 6 C -0.760 4.760 7 C -0.048 4.048 8 C -0.158 4.158 9 C -0.068 4.068 10 C -0.205 4.205 11 C 0.080 3.920 12 N -0.232 5.232 13 C -0.066 4.066 14 C -0.172 4.172 15 C 0.199 3.801 16 O -0.393 6.393 17 C -0.597 4.597 18 H 0.076 0.924 19 C -0.168 4.168 20 N -0.548 5.548 21 Si 0.783 3.217 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.051 4.051 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.259 0.741 30 H 0.176 0.824 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.649 12.149 -7.015 17.027 hybrid contribution 0.447 -1.094 2.882 3.115 sum -9.203 11.055 -4.133 14.966 Atomic orbital electron populations 1.21663 0.77405 1.05659 1.01949 1.54985 1.16762 1.23696 1.91635 1.00835 0.72385 0.72665 0.73245 1.93507 1.79748 1.70110 1.54737 1.93556 1.32981 1.83336 1.87352 1.30659 1.16456 1.10545 1.18382 1.21253 0.91432 0.91073 1.01012 1.21681 1.01147 1.01746 0.91208 1.21726 0.92065 0.92901 1.00134 1.22019 1.02320 0.98166 0.97981 1.18786 0.90867 0.89992 0.92343 1.61242 1.03250 1.04455 1.54204 1.22799 0.89791 0.98540 0.95500 1.23097 1.01615 0.96874 0.95617 1.19716 0.88814 0.85641 0.85910 1.86129 1.53206 1.55625 1.44306 1.21711 0.95325 1.33181 1.09455 0.92442 1.25651 0.95004 0.96001 1.00121 1.69821 1.04070 1.41147 1.39798 0.85624 0.77947 0.78702 0.79380 1.19994 1.20957 1.19666 1.23023 0.95561 0.91114 0.95395 0.88023 0.92379 0.90747 0.74065 0.82391 0.81281 0.82233 0.85825 0.91448 0.92314 0.92100 0.93023 0.77881 0.92232 0.92181 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 11.17 127.77 1.43 2.98 16 2 N -1.11 -29.22 6.19 -206.54 -1.28 -30.50 16 3 S 2.72 85.25 5.27 -56.49 -0.30 84.95 16 4 O -0.99 -32.01 16.62 -128.00 -2.13 -34.14 16 5 O -0.98 -38.76 17.24 -128.00 -2.21 -40.97 16 6 C -0.67 -19.75 5.89 22.40 0.13 -19.62 16 7 C -0.03 -0.65 9.54 22.25 0.21 -0.43 16 8 C -0.14 -2.55 10.04 22.29 0.22 -2.33 16 9 C -0.05 -1.02 10.04 22.25 0.22 -0.80 16 10 C -0.18 -5.23 7.80 22.40 0.17 -5.05 16 11 C 0.18 5.74 4.59 38.21 0.18 5.91 16 12 N -0.51 -19.33 3.84 -685.17 -2.63 -21.96 16 13 C 0.06 2.40 6.53 86.64 0.57 2.97 16 14 C -0.13 -6.01 5.37 31.77 0.17 -5.84 16 15 C 0.24 11.42 0.87 -10.16 -0.01 11.41 16 16 O -0.59 -29.94 13.16 -148.98 -1.96 -31.90 16 17 C -0.56 -28.55 8.27 25.60 0.21 -28.34 16 18 H 0.06 2.89 7.79 -2.91 -0.02 2.87 16 19 C 0.03 1.70 5.29 84.66 0.45 2.15 16 20 N -0.91 -47.43 10.75 21.45 0.23 -47.20 16 21 Si 0.96 40.67 29.54 68.60 2.03 42.69 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 C 0.07 3.02 5.73 86.77 0.50 3.52 16 26 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 1.30 8.00 -2.38 -0.02 1.28 16 29 H 0.42 11.29 8.96 -96.74 -0.87 10.42 16 30 H 0.16 3.06 7.33 -2.91 -0.02 3.04 16 31 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.12 3.71 7.74 -2.91 -0.02 3.69 16 34 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.06 2.14 7.00 -2.38 -0.02 2.13 16 36 H 0.06 2.98 7.54 -2.39 -0.02 2.97 16 37 H 0.05 2.33 8.04 -2.39 -0.02 2.32 16 38 H 0.37 19.57 7.56 -74.06 -0.56 19.01 16 39 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 40 H 0.06 2.34 6.71 -2.39 -0.02 2.33 16 41 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -65.74 348.69 -4.15 -69.88 By element: Atomic # 1 Polarization: 42.99 SS G_CDS: -0.36 Total: 42.64 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 4.45 Total: -33.49 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -3.68 Total: -99.66 kcal Atomic # 8 Polarization: -100.71 SS G_CDS: -6.30 Total: -107.01 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 85.25 SS G_CDS: -0.30 Total: 84.95 kcal Total: -65.74 -4.15 -69.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603397098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.971 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds