Wall clock time and date at job start Fri Apr 10 2020 18:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46983 * 2 1 4 4 N 1.46502 * 109.47431 * 120.00107 * 2 1 3 5 5 C 1.34776 * 119.99378 * 84.99902 * 4 2 1 6 6 O 1.21278 * 120.00542 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99223 * 180.02562 * 5 4 2 8 8 N 1.46505 * 109.47019 * 180.02562 * 7 5 4 9 9 S 1.65597 * 120.00072 * 164.99885 * 8 7 5 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.08998 * 109.47299 * 299.99819 * 1 2 3 27 27 H 1.08998 * 109.47620 * 59.99561 * 1 2 3 28 28 H 1.08998 * 109.46827 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46889 * 240.00518 * 2 1 3 30 30 H 1.08999 * 109.46796 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46808 * 300.00453 * 3 2 1 32 32 H 1.08998 * 109.46955 * 59.99971 * 3 2 1 33 33 H 0.97000 * 119.99933 * 265.00105 * 4 2 1 34 34 H 1.08997 * 109.47129 * 60.00069 * 7 5 4 35 35 H 1.09003 * 109.47087 * 299.99757 * 7 5 4 36 36 H 0.97007 * 119.99457 * 345.00299 * 8 7 5 37 37 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 38 38 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 39 39 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 40 40 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1942 6 8 1.8590 -2.6677 0.2022 7 6 2.6490 -2.7427 2.4249 8 7 2.6990 -4.1846 2.1701 9 16 3.5485 -5.1763 3.1884 10 8 4.8228 -4.5731 3.3653 11 8 3.3759 -6.4985 2.6970 12 6 2.7493 -5.1204 4.7577 13 6 3.1285 -4.1690 5.6924 14 6 2.5128 -4.1173 6.9332 15 6 1.5087 -5.0049 7.2465 16 6 1.1116 -5.9710 6.3037 17 6 0.0816 -6.8883 6.6145 18 1 0.0337 -7.8395 6.1051 19 6 -0.8757 -6.5640 7.5824 20 7 -1.0425 -5.3182 7.9457 21 14 -1.9154 -7.9096 8.3557 22 1 -1.5344 -9.2233 7.7774 23 1 -1.6869 -7.9301 9.8229 24 1 -3.3507 -7.6452 8.0817 25 6 1.7478 -6.0179 5.0492 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 2.2491 -0.1823 1.9894 34 1 1.9761 -2.5439 3.2590 35 1 3.6481 -2.3826 2.6702 36 1 2.2344 -4.5582 1.4049 37 1 3.9123 -3.4655 5.4533 38 1 2.8193 -3.3749 7.6553 39 1 1.0275 -4.9603 8.2123 40 1 -1.7064 -5.0933 8.6163 41 1 1.4510 -6.7553 4.3181 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619474012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:59 Heat of formation + Delta-G solvation = -104.563103 kcal Electronic energy + Delta-G solvation = -25241.944371 eV Core-core repulsion = 21441.072217 eV Total energy + Delta-G solvation = -3800.872154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00530 -37.67535 -36.70986 -36.35655 -35.32782 -34.46508 -33.87513 -31.83107 -30.11238 -29.82359 -27.51617 -26.96453 -25.51980 -21.94479 -21.82874 -21.02776 -20.68992 -19.23981 -18.14544 -17.63231 -16.71403 -16.30641 -15.99442 -15.81296 -15.39785 -15.08250 -14.83103 -14.48129 -14.42398 -13.69419 -13.45587 -13.39427 -13.27968 -12.82403 -12.67092 -12.61007 -12.44359 -11.93946 -11.68281 -11.66922 -11.63059 -11.55695 -11.42101 -11.39873 -11.24992 -11.01572 -10.93208 -10.61871 -10.06284 -9.84024 -9.71880 -9.38593 -9.35584 -9.21704 -8.08187 -7.74298 -6.96352 -4.56515 0.96643 2.15271 2.47763 2.59467 2.90977 2.99004 3.02327 3.06108 3.57005 3.81140 4.22448 4.39010 4.46110 4.65687 4.75452 4.93529 4.96263 5.19142 5.27329 5.34248 5.37134 5.40370 5.48727 5.61804 5.72922 5.84312 6.00236 6.01738 6.13023 6.27850 6.63068 6.72801 6.81387 7.00102 7.15181 7.18615 7.33295 7.35244 7.68615 7.78411 7.91174 8.02717 8.37595 8.63740 8.68620 9.98994 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.003361 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.379211 B = 8327.739856 C = 9346.856990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.727 5.727 5 C 0.517 3.483 6 O -0.532 6.532 7 C 0.101 3.899 8 N -1.110 6.110 9 S 2.693 3.307 10 O -0.975 6.975 11 O -0.967 6.967 12 C -0.632 4.632 13 C -0.153 4.153 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.458 4.458 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.122 4.122 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.423 0.577 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.283 0.717 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 12.683 -8.263 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 C -0.218 4.218 4 N -0.381 5.381 5 C 0.302 3.698 6 O -0.408 6.408 7 C -0.029 4.029 8 N -0.871 5.871 9 S 2.789 3.211 10 O -0.965 6.965 11 O -0.957 6.957 12 C -0.725 4.725 13 C -0.174 4.174 14 C -0.139 4.139 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.487 4.487 18 H 0.102 0.898 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.260 0.740 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.633 11.970 -8.970 15.188 hybrid contribution -1.302 -0.078 1.109 1.712 sum 1.331 11.893 -7.861 14.318 Atomic orbital electron populations 1.22200 0.95148 1.02916 1.02109 1.20953 0.94311 0.92802 0.88801 1.22081 1.01782 0.94970 1.02996 1.46052 1.68050 1.06845 1.17114 1.20607 0.77185 0.82380 0.89619 1.90682 1.49625 1.65782 1.34729 1.21013 1.03857 0.81718 0.96339 1.55402 1.72609 1.15325 1.43769 1.01578 0.73409 0.72329 0.73787 1.93506 1.38407 1.77899 1.86679 1.93550 1.86454 1.35341 1.80364 1.29744 1.14355 1.08284 1.20068 1.20072 1.02226 0.99803 0.95338 1.20800 0.97617 0.99456 0.96041 1.21640 0.95873 0.96693 0.99713 1.17699 0.91512 0.92120 0.89914 1.19674 1.08100 1.02827 1.18148 0.89806 1.25942 0.97118 0.96114 0.95148 1.69787 1.28971 1.18178 1.24919 0.86201 0.79159 0.81741 0.79373 1.18172 1.19583 1.19845 1.20812 0.97252 0.98781 0.97461 0.92307 0.91698 0.91878 0.89390 0.91875 0.90951 0.91909 0.76211 0.88052 0.87357 0.73982 0.87552 0.88372 0.85742 0.90625 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.13 3.18 -67.93 -0.22 0.91 16 3 C -0.16 -0.89 9.38 37.16 0.35 -0.54 16 4 N -0.73 -6.54 5.08 -53.80 -0.27 -6.81 16 5 C 0.52 6.47 7.86 -10.98 -0.09 6.39 16 6 O -0.53 -8.46 15.39 5.56 0.09 -8.37 16 7 C 0.10 1.27 6.70 -5.19 -0.03 1.24 16 8 N -1.11 -17.17 5.93 -11.65 -0.07 -17.24 16 9 S 2.69 50.23 5.73 -107.50 -0.62 49.61 16 10 O -0.97 -19.23 16.74 -57.17 -0.96 -20.19 16 11 O -0.97 -20.62 17.27 -57.17 -0.99 -21.61 16 12 C -0.63 -13.38 5.94 -39.66 -0.24 -13.62 16 13 C -0.15 -3.14 9.53 -39.29 -0.37 -3.51 16 14 C -0.12 -2.56 10.02 -39.66 -0.40 -2.96 16 15 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 16 C 0.09 2.31 5.58 -106.82 -0.60 1.72 16 17 C -0.46 -11.63 9.05 -37.75 -0.34 -11.97 16 18 H 0.08 2.07 7.91 -52.49 -0.41 1.65 16 19 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 20 N -0.79 -19.20 10.95 55.55 0.61 -18.59 16 21 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 25 C -0.12 -2.88 9.26 -38.87 -0.36 -3.24 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.88 7.58 -51.93 -0.39 0.48 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.40 2.49 8.60 -40.82 -0.35 2.14 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.11 1.17 7.75 -51.93 -0.40 0.77 16 36 H 0.42 6.45 7.70 -34.48 -0.27 6.19 16 37 H 0.11 1.90 7.61 -52.49 -0.40 1.50 16 38 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 40 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 41 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -32.13 362.10 -9.62 -41.75 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.47 Total: 11.31 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.37 Total: -28.15 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.27 Total: -42.64 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.86 Total: -50.17 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -0.62 Total: 49.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.13 -9.62 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619474012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.811 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds