Wall clock time and date at job start Fri Apr 10 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00279 * 2 1 4 4 C 1.52990 * 109.47049 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47301 * 64.99817 * 4 3 2 6 6 C 1.36269 * 119.82011 * 269.72572 * 5 4 3 7 7 N 1.36263 * 120.69748 * 0.02562 * 6 5 4 8 8 C 1.40603 * 118.60709 * 179.74602 * 6 5 4 9 9 C 1.41508 * 120.86077 * 180.28200 * 8 6 5 10 10 O 1.21417 * 119.99621 * 353.89745 * 9 8 6 11 11 C 1.50693 * 120.00166 * 173.89532 * 9 8 6 12 12 N 1.46500 * 109.47004 * 179.97438 * 11 9 8 13 13 C 1.46499 * 119.99698 * 90.00380 * 12 11 9 14 14 C 1.36938 * 120.00197 * 270.00213 * 12 11 9 15 15 H 1.07995 * 119.99943 * 24.80036 * 14 12 11 16 16 C 1.38815 * 119.99711 * 204.80242 * 14 12 11 17 17 N 1.31620 * 120.00254 * 6.08387 * 16 14 12 18 18 Si 1.86805 * 119.99774 * 186.08596 * 16 14 12 19 19 H 1.48502 * 109.46945 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47041 * 120.00119 * 18 16 14 21 21 H 1.48494 * 109.46822 * 239.99819 * 18 16 14 22 22 C 1.41820 * 118.28440 * 0.53527 * 8 6 5 23 23 O 1.35027 * 120.26063 * 179.69881 * 22 8 6 24 24 N 1.32302 * 119.47943 * 359.72257 * 22 8 6 25 25 C 1.33193 * 121.39655 * 359.97438 * 24 22 8 26 26 O 1.21886 * 119.06687 * 179.97438 * 25 24 22 27 27 H 1.08993 * 109.47182 * 300.00671 * 1 2 3 28 28 H 1.09002 * 109.46558 * 59.99904 * 1 2 3 29 29 H 1.08995 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46936 * 59.99200 * 3 2 1 31 31 H 1.09001 * 109.46984 * 299.99692 * 3 2 1 32 32 H 1.09007 * 109.47339 * 184.99770 * 4 3 2 33 33 H 1.09000 * 109.47265 * 304.99722 * 4 3 2 34 34 H 0.96992 * 120.00178 * 155.00877 * 7 6 5 35 35 H 0.97004 * 119.99800 * 335.00940 * 7 6 5 36 36 H 1.08999 * 109.47385 * 300.00249 * 11 9 8 37 37 H 1.09006 * 109.46956 * 60.00383 * 11 9 8 38 38 H 1.09003 * 109.47441 * 95.02975 * 13 12 11 39 39 H 1.08996 * 109.47404 * 215.03434 * 13 12 11 40 40 H 1.09004 * 109.47417 * 335.02975 * 13 12 11 41 41 H 0.96996 * 119.99836 * 179.97438 * 17 16 14 42 42 H 0.96708 * 114.00005 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1013 -0.7910 -1.3282 7 7 3.8191 -1.5781 -0.2523 8 6 4.5215 -1.3601 -2.5433 9 6 4.6612 -2.7618 -2.6784 10 8 4.5254 -3.4815 -1.7100 11 6 4.9787 -3.3612 -4.0240 12 7 5.0717 -4.8180 -3.9000 13 6 3.8779 -5.6466 -4.0860 14 6 6.2744 -5.4051 -3.6103 15 1 7.0381 -4.8444 -3.0921 16 6 6.5119 -6.7211 -3.9829 17 7 5.6310 -7.3662 -4.7179 18 14 8.0817 -7.5764 -3.4410 19 1 8.9000 -6.6407 -2.6285 20 1 7.7392 -8.7696 -2.6259 21 1 8.8533 -7.9990 -4.6373 22 6 4.8069 -0.4928 -3.6285 23 8 5.2191 -0.9962 -4.8116 24 7 4.6665 0.8134 -3.4722 25 6 4.2613 1.3343 -2.3153 26 8 4.1470 2.5439 -2.2182 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6888 1.8463 -0.8900 32 1 3.9786 2.1765 0.0902 33 1 3.8508 0.5684 0.8427 34 1 3.5557 -2.5023 -0.3832 35 1 3.8816 -1.2140 0.6447 36 1 4.1891 -3.1060 -4.7309 37 1 5.9292 -2.9660 -4.3827 38 1 3.8366 -5.9981 -5.1170 39 1 3.9207 -6.5020 -3.4119 40 1 2.9881 -5.0561 -3.8676 41 1 5.7972 -8.2856 -4.9785 42 1 5.3881 -0.3251 -5.4872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349943371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:16 Heat of formation + Delta-G solvation = -62.593848 kcal Electronic energy + Delta-G solvation = -29088.676424 eV Core-core repulsion = 24879.164073 eV Total energy + Delta-G solvation = -4209.512351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.00906 -39.28214 -38.60901 -38.10400 -37.13745 -34.99595 -34.82040 -33.91175 -31.34817 -30.65704 -30.22148 -27.08642 -26.70697 -25.69484 -24.56890 -23.95228 -22.87538 -21.54455 -19.97009 -19.50672 -18.87795 -17.72744 -17.00096 -16.76142 -16.68413 -16.57426 -15.90072 -15.58348 -15.40991 -15.27019 -14.86876 -14.53347 -14.32186 -13.87720 -13.75688 -13.70405 -13.18200 -13.09695 -12.86498 -12.68801 -12.48742 -12.19517 -11.67632 -11.65138 -11.06830 -10.81339 -10.76340 -10.60467 -10.25851 -10.21840 -10.08671 -9.95591 -9.86596 -9.81394 -9.80547 -9.01165 -8.41281 -8.17197 -6.61453 -5.62293 -3.09823 0.92698 1.33736 2.02683 3.10226 3.15569 3.25697 3.43812 3.50322 3.52140 3.53527 3.90838 4.16581 4.43493 4.46826 4.57322 4.69472 4.85803 4.93951 4.95491 4.98522 5.15806 5.16797 5.32818 5.34208 5.55406 5.63181 5.82593 6.06960 6.41762 6.46637 6.62150 6.68158 6.80986 6.88516 7.19586 7.29730 7.54185 7.82613 7.84592 7.92099 8.19152 8.39544 8.56473 9.34302 9.95427 10.44666 11.42651 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.003581 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.866765 B = 7816.225774 C = 8449.625298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.043 3.957 4 C 0.097 3.903 5 N -0.546 5.546 6 C 0.564 3.436 7 N -0.789 5.789 8 C -0.406 4.406 9 C 0.389 3.611 10 O -0.478 6.478 11 C 0.123 3.877 12 N -0.586 5.586 13 C 0.169 3.831 14 C -0.242 4.242 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.911 5.911 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.507 3.493 23 O -0.426 6.426 24 N -0.649 5.649 25 C 0.678 3.322 26 O -0.542 6.542 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.437 0.563 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.044 0.956 40 H -0.009 1.009 41 H 0.250 0.750 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 16.957 9.837 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C -0.034 4.034 4 C -0.026 4.026 5 N -0.272 5.272 6 C 0.330 3.670 7 N -0.339 5.339 8 C -0.421 4.421 9 C 0.267 3.733 10 O -0.356 6.356 11 C -0.006 4.006 12 N -0.307 5.307 13 C 0.024 3.976 14 C -0.372 4.372 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.557 5.557 18 Si 0.736 3.264 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.310 3.690 23 O -0.220 6.220 24 N -0.411 5.411 25 C 0.380 3.620 26 O -0.418 6.418 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.282 0.718 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.009 0.991 41 H 0.061 0.939 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.783 17.020 9.973 21.593 hybrid contribution 0.424 -0.396 0.873 1.048 sum -8.359 16.623 10.846 21.537 Atomic orbital electron populations 1.22749 0.80286 1.03161 1.00036 1.87884 1.20383 1.27004 1.95516 1.22912 0.92530 0.85886 1.02087 1.21946 0.94117 1.01773 0.84806 1.46775 1.59227 1.05290 1.15937 1.18109 0.80247 0.80567 0.88103 1.42738 1.68852 1.16921 1.05359 1.18982 1.32107 0.98481 0.92548 1.22386 0.71723 0.85004 0.94164 1.90247 1.41282 1.63545 1.40497 1.20999 1.01702 0.86172 0.91713 1.43663 1.06513 0.98779 1.81747 1.20793 0.84149 0.92626 1.00004 1.19181 0.92049 0.96112 1.29833 0.91740 1.25043 0.97889 0.98183 0.98472 1.70064 1.35102 1.11051 1.39514 0.86166 0.83102 0.79455 0.77725 1.20421 1.21781 1.21735 1.20000 0.77278 0.87155 0.84549 1.85278 1.78607 1.38058 1.20071 1.69437 1.36596 1.11786 1.23241 1.17241 0.78330 0.86992 0.79410 1.90927 1.57167 1.11595 1.82069 0.93924 0.93960 0.89268 0.91112 0.91869 0.85858 0.88944 0.71796 0.76359 0.91067 0.89344 0.95113 0.93751 0.99064 0.93937 0.73199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.45 9.41 -35.23 -0.33 -3.79 16 3 C 0.04 0.34 6.28 37.15 0.23 0.57 16 4 C 0.10 0.80 5.51 -4.05 -0.02 0.77 16 5 N -0.55 -6.64 2.57 -120.61 -0.31 -6.95 16 6 C 0.56 7.29 7.13 -153.63 -1.10 6.19 16 7 N -0.79 -8.43 7.30 31.59 0.23 -8.20 16 8 C -0.41 -6.26 5.78 -106.39 -0.61 -6.88 16 9 C 0.39 7.28 6.97 -33.07 -0.23 7.05 16 10 O -0.48 -9.88 13.90 5.44 0.08 -9.80 16 11 C 0.12 2.53 4.28 -5.20 -0.02 2.51 16 12 N -0.59 -15.09 2.41 -182.50 -0.44 -15.53 16 13 C 0.17 4.31 8.95 59.85 0.54 4.84 16 14 C -0.24 -6.81 9.66 -15.06 -0.15 -6.96 16 15 H 0.06 1.81 7.84 -52.49 -0.41 1.40 16 16 C 0.00 0.04 5.23 -17.43 -0.09 -0.05 16 17 N -0.91 -26.91 10.46 55.49 0.58 -26.33 16 18 Si 0.91 22.35 29.56 -169.99 -5.02 17.32 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C 0.51 7.32 7.88 -15.98 -0.13 7.20 16 23 O -0.43 -5.23 9.72 -16.79 -0.16 -5.39 16 24 N -0.65 -10.06 10.34 -16.56 -0.17 -10.23 16 25 C 0.68 10.52 8.32 -88.61 -0.74 9.79 16 26 O -0.54 -9.50 16.66 5.02 0.08 -9.42 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.12 0.97 7.36 -51.92 -0.38 0.59 16 33 H 0.09 0.51 6.27 -51.93 -0.33 0.18 16 34 H 0.44 5.52 6.17 -40.82 -0.25 5.27 16 35 H 0.40 3.00 6.92 -40.82 -0.28 2.72 16 36 H 0.07 1.35 7.59 -51.93 -0.39 0.96 16 37 H 0.09 1.79 6.78 -51.93 -0.35 1.43 16 38 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 39 H 0.04 1.23 7.27 -51.93 -0.38 0.85 16 40 H -0.01 -0.21 8.03 -51.93 -0.42 -0.63 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.41 3.15 8.98 45.56 0.41 3.55 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -37.22 350.24 -5.81 -43.03 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.41 Total: 3.62 kcal Atomic # 6 Polarization: 27.60 SS G_CDS: -1.20 Total: 26.39 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.11 Total: -67.25 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.34 Total: -28.40 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.22 -5.81 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349943371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.562 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds