Wall clock time and date at job start Fri Apr 10 2020 18:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46558 * 2 1 4 4 C 1.52999 * 109.46920 * 240.00081 * 2 1 3 5 5 N 1.46498 * 109.47070 * 64.99850 * 4 2 1 6 6 C 1.46506 * 120.00239 * 90.00054 * 5 4 2 7 7 C 1.34777 * 119.99828 * 269.71859 * 5 4 2 8 8 O 1.21583 * 119.99943 * 0.28074 * 7 5 4 9 9 N 1.34777 * 120.00128 * 180.27451 * 7 5 4 10 10 C 1.46494 * 120.00401 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47474 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99540 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99670 * 180.02562 * 11 10 9 14 14 C 1.37104 * 119.99364 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99826 * 359.97438 * 14 13 11 16 16 C 1.38945 * 119.99480 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99650 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00335 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99742 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99808 * 18 16 14 21 21 H 1.48496 * 109.47087 * 329.99464 * 18 16 14 22 22 C 1.50701 * 109.47266 * 119.99466 * 2 1 3 23 23 N 1.29018 * 124.91746 * 240.00124 * 22 2 1 24 24 C 1.31781 * 117.12454 * 179.97438 * 23 22 2 25 25 C 1.33645 * 114.50257 * 359.97438 * 24 23 22 26 26 S 1.70981 * 124.91116 * 59.70214 * 22 2 1 27 27 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46848 * 299.99643 * 1 2 3 29 29 H 1.08993 * 109.47328 * 60.00352 * 1 2 3 30 30 H 1.08993 * 109.47367 * 304.99178 * 4 2 1 31 31 H 1.09001 * 109.46864 * 184.99352 * 4 2 1 32 32 H 1.08999 * 109.46892 * 269.72399 * 6 5 4 33 33 H 1.09000 * 109.46803 * 29.71572 * 6 5 4 34 34 H 1.09000 * 109.47214 * 149.72366 * 6 5 4 35 35 H 0.97000 * 119.99555 * 0.02562 * 9 7 5 36 36 H 1.09008 * 109.46812 * 300.00494 * 10 9 7 37 37 H 1.08998 * 109.46857 * 60.00088 * 10 9 7 38 38 H 0.96992 * 120.00549 * 359.97438 * 13 11 10 39 39 H 0.97001 * 119.99627 * 180.02562 * 17 16 14 40 40 H 1.07999 * 122.75302 * 180.02562 * 24 23 22 41 41 H 1.07998 * 126.03962 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4423 6 6 2.5426 1.0697 -2.9752 7 6 0.4793 -0.2240 -3.0531 8 8 -0.2595 -1.0824 -2.6110 9 7 0.1251 0.4682 -4.1540 10 6 -1.1502 0.1867 -4.8176 11 6 -1.3042 1.0900 -6.0140 12 8 -0.4343 1.8906 -6.2853 13 7 -2.4089 1.0089 -6.7818 14 6 -2.5491 1.8312 -7.8700 15 1 -1.7746 2.5440 -8.1115 16 6 -3.6878 1.7472 -8.6618 17 7 -3.8225 2.5357 -9.7045 18 14 -5.0277 0.5147 -8.2435 19 1 -6.0125 1.1457 -7.3285 20 1 -5.7131 0.0867 -9.4895 21 1 -4.4227 -0.6681 -7.5801 22 6 2.0324 -0.7103 1.2305 23 7 2.7773 -0.1767 2.1388 24 6 3.1279 -0.9409 3.1536 25 6 2.6518 -2.1884 3.0985 26 16 1.6917 -2.3378 1.6285 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.6055 -1.7198 -1.2951 31 1 3.1263 -0.7993 -1.2056 32 1 2.3007 2.0286 -2.5168 33 1 3.5770 0.8100 -2.7499 34 1 2.4125 1.1401 -4.0551 35 1 0.7148 1.1528 -4.5069 36 1 -1.1684 -0.8534 -5.1433 37 1 -1.9692 0.3636 -4.1205 38 1 -3.1046 0.3690 -6.5646 39 1 -4.6175 2.4773 -10.2571 40 1 3.7484 -0.5877 3.9639 41 1 2.8222 -2.9664 3.8279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358276262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:08 Heat of formation + Delta-G solvation = -7.296455 kcal Electronic energy + Delta-G solvation = -24820.276221 eV Core-core repulsion = 21055.914616 eV Total energy + Delta-G solvation = -3764.361605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46579 -39.86614 -38.50287 -36.47013 -34.71760 -34.16079 -33.45574 -31.80454 -29.94566 -28.21340 -27.39186 -26.26200 -25.27836 -24.07378 -21.85098 -20.40537 -19.83268 -19.63508 -18.81481 -18.06881 -17.87618 -16.55176 -16.16777 -15.75496 -15.60323 -15.10313 -14.88424 -14.70530 -14.63600 -14.08903 -14.03104 -13.56158 -13.31764 -13.26456 -13.12912 -12.89992 -12.61279 -12.31887 -12.14632 -12.11126 -11.83568 -11.78233 -11.54700 -11.24379 -11.18501 -10.64890 -10.09187 -10.05827 -9.91869 -9.72025 -9.70698 -9.24055 -9.00803 -8.78098 -8.59397 -8.31282 -6.41571 -3.94220 0.39429 1.06849 1.48517 2.47229 2.61665 2.99117 3.03842 3.12138 3.23339 3.56221 3.76010 4.01317 4.03702 4.52985 4.57228 4.73150 4.76902 4.86249 4.98195 5.13446 5.14166 5.18272 5.31281 5.31646 5.52086 5.59330 5.65326 5.71386 5.78364 5.80211 5.84158 5.90311 6.18092 6.31506 6.61639 6.88899 7.43265 7.43981 7.98686 8.04229 8.43246 8.65857 8.80844 9.28995 9.62468 10.70539 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.002216 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.462567 B =12629.775151 C =13201.259509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.632 5.632 6 C 0.076 3.924 7 C 0.707 3.293 8 O -0.590 6.590 9 N -0.724 5.724 10 C 0.125 3.875 11 C 0.438 3.562 12 O -0.580 6.580 13 N -0.576 5.576 14 C -0.310 4.310 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 C 0.062 3.938 23 N -0.477 5.477 24 C 0.038 3.962 25 C -0.270 4.270 26 S 0.136 5.864 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.375 0.625 39 H 0.276 0.724 40 H 0.175 0.825 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.987 -9.841 23.039 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.058 4.058 3 H 0.120 0.880 4 C 0.018 3.982 5 N -0.369 5.369 6 C -0.068 4.068 7 C 0.408 3.592 8 O -0.468 6.468 9 N -0.383 5.383 10 C -0.004 4.004 11 C 0.224 3.776 12 O -0.464 6.464 13 N -0.214 5.214 14 C -0.438 4.438 15 H 0.139 0.861 16 C -0.160 4.160 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 C -0.216 4.216 23 N -0.191 5.191 24 C -0.114 4.114 25 C -0.409 4.409 26 S 0.390 5.610 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.208 0.792 39 H 0.086 0.914 40 H 0.192 0.808 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.466 -10.080 22.411 27.117 hybrid contribution -0.238 -0.211 0.840 0.898 sum 11.228 -10.291 23.251 27.795 Atomic orbital electron populations 1.21873 0.91917 1.03295 1.02375 1.20348 0.97492 1.00043 0.87964 0.88008 1.21359 0.99594 0.95456 0.81800 1.46857 1.19726 1.40817 1.29499 1.21821 0.94209 0.90944 0.99796 1.15739 0.81427 0.81818 0.80218 1.90903 1.52486 1.36031 1.67425 1.44938 1.22686 1.42083 1.28590 1.20817 0.85935 0.99553 0.94073 1.19656 0.84335 0.87602 0.85988 1.90530 1.41977 1.40776 1.73154 1.42117 1.17885 1.35155 1.26220 1.19435 1.06522 1.16042 1.01827 0.86088 1.25072 0.97697 0.97476 0.95708 1.69621 1.28745 1.37364 1.15579 0.86668 0.82444 0.81254 0.79115 1.19390 1.20000 1.19191 1.27064 0.99177 0.95349 1.00049 1.66314 1.13523 1.36884 1.02415 1.21809 1.01916 0.89773 0.97859 1.27164 1.07255 1.02756 1.03725 1.84243 1.47065 1.13099 1.16620 0.91513 0.92873 0.90855 0.89202 0.90161 0.92331 0.90774 0.90685 0.75191 0.89859 0.89837 0.79225 0.91389 0.80849 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.84 37.16 0.29 -1.24 16 2 C -0.03 -0.35 3.02 -91.77 -0.28 -0.63 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.14 1.43 4.90 -4.04 -0.02 1.41 16 5 N -0.63 -7.18 2.76 -187.35 -0.52 -7.69 16 6 C 0.08 0.67 10.25 59.85 0.61 1.29 16 7 C 0.71 10.41 6.87 -86.92 -0.60 9.81 16 8 O -0.59 -9.97 14.15 5.29 0.07 -9.90 16 9 N -0.72 -11.30 5.39 -66.42 -0.36 -11.66 16 10 C 0.12 2.11 6.15 -5.20 -0.03 2.08 16 11 C 0.44 9.45 7.85 -10.98 -0.09 9.36 16 12 O -0.58 -14.35 15.24 5.55 0.08 -14.27 16 13 N -0.58 -13.20 5.09 -10.96 -0.06 -13.25 16 14 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 15 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 16 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 17 N -0.87 -24.78 13.96 55.50 0.77 -24.00 16 18 Si 0.88 18.83 27.74 -169.99 -4.71 14.11 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 22 C 0.06 0.62 6.03 -13.46 -0.08 0.54 16 23 N -0.48 -5.16 10.54 -11.86 -0.13 -5.28 16 24 C 0.04 0.32 11.35 -19.18 -0.22 0.10 16 25 C -0.27 -1.98 11.37 29.12 0.33 -1.65 16 26 S 0.14 1.16 22.67 -107.50 -2.44 -1.28 16 27 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.96 6.08 -51.93 -0.32 0.64 16 30 H 0.09 0.99 7.38 -51.93 -0.38 0.60 16 31 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 34 H 0.07 0.72 6.36 -51.93 -0.33 0.39 16 35 H 0.41 6.32 5.17 -40.82 -0.21 6.11 16 36 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 39 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -32.84 356.40 -7.44 -40.28 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.21 Total: 14.00 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.32 Total: 13.57 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.28 Total: -61.89 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.11 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.44 Total: -1.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.84 -7.44 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358276262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.981 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds