Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47231 * 224.26995 * 3 2 1 5 5 C 1.37098 * 120.00096 * 265.76082 * 4 3 2 6 6 H 1.08001 * 120.00068 * 317.65653 * 5 4 3 7 7 C 1.38954 * 119.99857 * 137.65636 * 5 4 3 8 8 N 1.31416 * 119.99798 * 160.63690 * 7 5 4 9 9 Si 1.86796 * 120.00279 * 340.63585 * 7 5 4 10 10 H 1.48502 * 109.47089 * 94.37059 * 9 7 5 11 11 H 1.48495 * 109.47307 * 214.36999 * 9 7 5 12 12 H 1.48499 * 109.47242 * 334.37581 * 9 7 5 13 13 C 1.34778 * 120.00076 * 85.75333 * 4 3 2 14 14 O 1.21294 * 120.00179 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99887 * 0.02562 * 13 4 3 16 16 H 1.09006 * 109.81347 * 347.14682 * 15 13 4 17 17 C 1.52293 * 109.64178 * 226.60737 * 15 13 4 18 18 C 1.50606 * 110.87417 * 192.96006 * 17 15 13 19 19 C 1.38977 * 117.61322 * 199.43387 * 18 17 15 20 20 C 1.37917 * 120.57452 * 181.10393 * 19 18 17 21 21 C 1.38260 * 119.82474 * 359.97438 * 20 19 18 22 22 C 1.37960 * 119.72586 * 359.75906 * 21 20 19 23 23 C 1.37671 * 122.85462 * 20.10595 * 18 17 15 24 24 C 1.50806 * 122.34384 * 358.56096 * 23 18 17 25 25 N 1.46673 * 109.69237 * 11.46386 * 24 23 18 26 26 C 1.34778 * 121.32948 * 135.65238 * 25 24 23 27 27 C 1.50706 * 119.99886 * 354.75045 * 26 25 24 28 28 O 1.21278 * 119.99924 * 174.75291 * 26 25 24 29 29 H 4.40641 * 5.51371 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46677 * 104.27255 * 3 2 1 31 31 H 1.08996 * 109.47544 * 344.27349 * 3 2 1 32 32 H 0.96997 * 120.00167 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.28586 * 72.53928 * 17 15 13 34 34 H 1.09006 * 109.06049 * 313.23257 * 17 15 13 35 35 H 1.07992 * 119.71591 * 1.12795 * 19 18 17 36 36 H 1.08004 * 120.08561 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.14075 * 179.77928 * 21 20 19 38 38 H 1.07998 * 119.75093 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.43348 * 251.39248 * 24 23 18 40 40 H 1.09006 * 109.39775 * 131.50916 * 24 23 18 41 41 H 1.08993 * 109.47148 * 60.00023 * 27 26 25 42 42 H 1.09001 * 109.46968 * 299.99650 * 27 26 25 43 43 H 1.08998 * 109.46823 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9899 0.9641 5 6 3.4446 2.2584 0.5470 6 1 3.9840 2.4061 -0.3770 7 6 3.0655 3.3540 1.3130 8 7 3.6631 4.5121 1.1441 9 14 1.7064 3.1806 2.5827 10 1 2.3040 2.8900 3.9108 11 1 0.9318 4.4455 2.6546 12 1 0.8032 2.0684 2.1923 13 6 3.2772 0.6530 2.2612 14 8 3.6807 1.4722 3.0596 15 6 2.9361 -0.7415 2.7197 16 1 2.3844 -1.2630 1.9374 17 6 2.0897 -0.6721 3.9839 18 6 1.9959 -2.0236 4.6418 19 6 0.9573 -2.2313 5.5415 20 6 0.8269 -3.4383 6.1960 21 6 1.7359 -4.4521 5.9563 22 6 2.7647 -4.2506 5.0595 23 6 2.8950 -3.0371 4.3975 24 6 4.0352 -2.8866 3.4220 25 7 4.1711 -1.4786 3.0342 26 6 5.3780 -0.8818 2.9736 27 6 6.6099 -1.6259 3.4209 28 8 5.4727 0.2540 2.5591 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0091 0.2542 -0.9960 31 1 3.0098 -0.9883 0.2785 32 1 3.3987 5.2769 1.6790 33 1 1.0877 -0.3277 3.7278 34 1 2.5448 0.0340 4.6786 35 1 0.2458 -1.4410 5.7295 36 1 0.0165 -3.5913 6.8933 37 1 1.6408 -5.3981 6.4687 38 1 3.4747 -5.0424 4.8717 39 1 3.8363 -3.4893 2.5359 40 1 4.9595 -3.2246 3.8906 41 1 6.7303 -2.5253 2.8172 42 1 6.5058 -1.9035 4.4699 43 1 7.4844 -0.9867 3.2998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368533940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = 54.904496 kcal Electronic energy + Delta-G solvation = -29027.476999 eV Core-core repulsion = 25233.909022 eV Total energy + Delta-G solvation = -3793.567977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.80094 -39.13328 -38.06257 -35.78663 -34.96010 -33.18263 -32.42465 -31.51091 -31.33962 -30.27530 -28.72905 -26.73085 -25.69103 -25.21490 -23.09969 -22.31369 -20.93304 -20.13198 -18.36630 -17.61418 -17.58907 -16.88639 -16.22757 -16.07745 -15.58290 -15.08152 -14.94968 -14.82296 -14.68998 -14.10199 -13.96497 -13.63036 -13.31084 -13.26528 -13.10039 -12.73486 -12.59940 -12.45650 -12.39346 -12.22481 -12.05777 -11.86481 -11.78463 -11.32868 -11.15659 -11.01537 -10.75022 -10.34397 -9.97442 -9.79827 -9.64407 -9.07458 -8.91869 -8.66473 -8.44163 -8.35706 -8.27728 -7.53488 -6.03951 -3.78297 1.22387 1.27207 2.92109 3.05868 3.22468 3.34059 3.48070 3.54790 3.62361 3.72225 4.11709 4.35817 4.55327 4.67624 4.77523 4.80698 4.86268 4.93987 4.99059 5.09746 5.18335 5.28557 5.30933 5.36310 5.41907 5.45739 5.50702 5.58540 5.61657 5.71451 5.87985 5.90552 5.92990 5.96320 6.18179 6.26288 6.32249 6.39398 6.42514 6.54535 6.62521 6.88625 7.66020 7.99937 8.06483 8.14570 8.59891 8.88444 9.11455 9.57295 9.96452 11.02250 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.005549 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.699953 B = 5044.498484 C = 5677.885947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.204 3.796 4 N -0.459 5.459 5 C -0.335 4.335 6 H 0.093 0.907 7 C 0.094 3.906 8 N -0.869 5.869 9 Si 0.902 3.098 10 H -0.257 1.257 11 H -0.311 1.311 12 H -0.277 1.277 13 C 0.486 3.514 14 O -0.513 6.513 15 C 0.126 3.874 16 H 0.087 0.913 17 C -0.092 4.092 18 C -0.054 4.054 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.113 4.113 23 C -0.100 4.100 24 C 0.154 3.846 25 N -0.612 5.612 26 C 0.491 3.509 27 C -0.167 4.167 28 O -0.464 6.464 29 H 0.210 0.790 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.269 0.731 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -21.719 6.553 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.181 4.181 3 C 0.080 3.920 4 N -0.182 5.182 5 C -0.460 4.460 6 H 0.110 0.890 7 C -0.114 4.114 8 N -0.505 5.505 9 Si 0.733 3.267 10 H -0.182 1.182 11 H -0.241 1.241 12 H -0.202 1.202 13 C 0.275 3.725 14 O -0.392 6.392 15 C 0.019 3.981 16 H 0.105 0.895 17 C -0.130 4.130 18 C -0.054 4.054 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.100 4.100 24 C 0.031 3.969 25 N -0.351 5.351 26 C 0.278 3.722 27 C -0.227 4.227 28 O -0.334 6.334 29 H 0.227 0.773 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.637 -20.405 6.749 21.653 hybrid contribution -1.176 -0.187 0.671 1.366 sum -3.812 -20.591 7.421 22.217 Atomic orbital electron populations 1.24727 0.95742 1.02027 1.01850 1.24183 0.95376 0.99110 0.99472 1.18713 0.82844 0.93695 0.96713 1.43443 1.58265 1.11448 1.05063 1.18696 1.37070 0.79231 1.11042 0.88983 1.25227 0.95716 0.94300 0.96186 1.69753 1.38587 1.01860 1.40289 0.86512 0.80025 0.75953 0.84197 1.18240 1.24068 1.20216 1.19365 0.81297 0.87568 0.84274 1.90534 1.45700 1.50680 1.52278 1.21195 0.85643 0.94339 0.96908 0.89520 1.20710 1.00878 0.94347 0.97079 1.19562 0.94298 0.94913 0.96636 1.21220 0.98077 0.97676 0.96788 1.21057 0.99263 0.93513 0.99745 1.21009 0.95473 0.99097 0.98898 1.20970 0.98759 0.96329 0.97061 1.19830 0.97206 0.94109 0.98893 1.20471 0.97163 0.82690 0.96562 1.47998 1.05669 1.10929 1.70496 1.20883 0.84205 0.87572 0.79492 1.21915 0.96501 1.01782 1.02495 1.91070 1.83877 1.16578 1.41838 0.77298 0.88350 0.90405 0.92118 0.89801 0.88546 0.86030 0.86134 0.86086 0.85895 0.90228 0.88539 0.89903 0.89938 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.89 19.25 29.55 0.57 -3.32 16 2 C -0.18 -3.48 13.05 -37.12 -0.48 -3.96 16 3 C 0.20 4.05 5.49 -6.83 -0.04 4.02 16 4 N -0.46 -11.66 2.14 -117.94 -0.25 -11.91 16 5 C -0.33 -10.00 9.68 -14.93 -0.14 -10.14 16 6 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 7 C 0.09 2.93 4.85 -17.46 -0.08 2.85 16 8 N -0.87 -28.15 13.96 55.50 0.77 -27.37 16 9 Si 0.90 25.42 24.81 -169.99 -4.22 21.20 16 10 H -0.26 -7.51 6.28 56.52 0.35 -7.16 16 11 H -0.31 -8.62 7.11 56.52 0.40 -8.22 16 12 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 13 C 0.49 12.10 2.52 -10.98 -0.03 12.08 16 14 O -0.51 -15.01 9.72 -19.06 -0.19 -15.19 16 15 C 0.13 2.40 2.67 -69.04 -0.18 2.21 16 16 H 0.09 1.52 5.44 -51.93 -0.28 1.23 16 17 C -0.09 -1.63 5.14 -28.29 -0.15 -1.78 16 18 C -0.05 -0.76 5.76 -104.60 -0.60 -1.37 16 19 C -0.12 -1.48 9.59 -39.42 -0.38 -1.86 16 20 C -0.12 -1.20 10.04 -39.69 -0.40 -1.60 16 21 C -0.13 -1.18 10.05 -39.68 -0.40 -1.57 16 22 C -0.11 -1.08 9.62 -39.46 -0.38 -1.46 16 23 C -0.10 -1.20 5.82 -104.55 -0.61 -1.80 16 24 C 0.15 1.71 6.10 -5.05 -0.03 1.68 16 25 N -0.61 -9.92 2.94 -168.44 -0.50 -10.42 16 26 C 0.49 8.91 7.72 -10.98 -0.08 8.82 16 27 C -0.17 -1.99 8.71 36.01 0.31 -1.68 16 28 O -0.46 -11.52 12.79 -19.05 -0.24 -11.76 16 29 H 0.21 2.75 7.80 -54.08 -0.42 2.33 16 30 H 0.10 1.85 8.01 -51.93 -0.42 1.43 16 31 H 0.08 1.31 6.45 -51.93 -0.33 0.98 16 32 H 0.27 8.23 8.31 -40.82 -0.34 7.89 16 33 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 34 H 0.10 1.96 7.49 -51.93 -0.39 1.57 16 35 H 0.12 1.40 8.05 -52.49 -0.42 0.97 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.82 8.05 -52.49 -0.42 0.40 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.80 6.17 -51.93 -0.32 0.48 16 41 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 42 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 43 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -40.02 352.94 -7.95 -47.97 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.54 Total: 1.06 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.11 Total: 1.11 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.03 Total: -49.71 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.43 Total: -26.95 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.22 Total: 21.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -40.02 -7.95 -47.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368533940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.872 kcal (2) G-P(sol) polarization free energy of solvation -40.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds