Wall clock time and date at job start Fri Apr 10 2020 18:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47231 * 224.26995 * 3 2 1 5 5 C 1.37098 * 120.00096 * 265.76082 * 4 3 2 6 6 H 1.08001 * 120.00068 * 317.65653 * 5 4 3 7 7 C 1.38954 * 119.99857 * 137.65636 * 5 4 3 8 8 N 1.31416 * 119.99798 * 160.63690 * 7 5 4 9 9 Si 1.86796 * 120.00279 * 340.63585 * 7 5 4 10 10 H 1.48502 * 109.47089 * 94.37059 * 9 7 5 11 11 H 1.48495 * 109.47307 * 214.36999 * 9 7 5 12 12 H 1.48499 * 109.47242 * 334.37581 * 9 7 5 13 13 C 1.34778 * 120.00076 * 85.75333 * 4 3 2 14 14 O 1.21294 * 120.00179 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99887 * 0.02562 * 13 4 3 16 16 H 1.09006 * 109.81347 * 347.14682 * 15 13 4 17 17 C 1.52293 * 109.64178 * 226.60737 * 15 13 4 18 18 C 1.50606 * 110.87417 * 192.96006 * 17 15 13 19 19 C 1.38977 * 117.61322 * 199.43387 * 18 17 15 20 20 C 1.37917 * 120.57452 * 181.10393 * 19 18 17 21 21 C 1.38260 * 119.82474 * 359.97438 * 20 19 18 22 22 C 1.37960 * 119.72586 * 359.75906 * 21 20 19 23 23 C 1.37671 * 122.85462 * 20.10595 * 18 17 15 24 24 C 1.50806 * 122.34384 * 358.56096 * 23 18 17 25 25 N 1.46673 * 109.69237 * 11.46386 * 24 23 18 26 26 C 1.34778 * 121.32948 * 135.65238 * 25 24 23 27 27 C 1.50706 * 119.99886 * 354.75045 * 26 25 24 28 28 O 1.21278 * 119.99924 * 174.75291 * 26 25 24 29 29 H 4.40641 * 5.51371 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46677 * 104.27255 * 3 2 1 31 31 H 1.08996 * 109.47544 * 344.27349 * 3 2 1 32 32 H 0.96997 * 120.00167 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.28586 * 72.53928 * 17 15 13 34 34 H 1.09006 * 109.06049 * 313.23257 * 17 15 13 35 35 H 1.07992 * 119.71591 * 1.12795 * 19 18 17 36 36 H 1.08004 * 120.08561 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.14075 * 179.77928 * 21 20 19 38 38 H 1.07998 * 119.75093 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.43348 * 251.39248 * 24 23 18 40 40 H 1.09006 * 109.39775 * 131.50916 * 24 23 18 41 41 H 1.08993 * 109.47148 * 60.00023 * 27 26 25 42 42 H 1.09001 * 109.46968 * 299.99650 * 27 26 25 43 43 H 1.08998 * 109.46823 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9899 0.9641 5 6 3.4446 2.2584 0.5470 6 1 3.9840 2.4061 -0.3770 7 6 3.0655 3.3540 1.3130 8 7 3.6631 4.5121 1.1441 9 14 1.7064 3.1806 2.5827 10 1 2.3040 2.8900 3.9108 11 1 0.9318 4.4455 2.6546 12 1 0.8032 2.0684 2.1923 13 6 3.2772 0.6530 2.2612 14 8 3.6807 1.4722 3.0596 15 6 2.9361 -0.7415 2.7197 16 1 2.3844 -1.2630 1.9374 17 6 2.0897 -0.6721 3.9839 18 6 1.9959 -2.0236 4.6418 19 6 0.9573 -2.2313 5.5415 20 6 0.8269 -3.4383 6.1960 21 6 1.7359 -4.4521 5.9563 22 6 2.7647 -4.2506 5.0595 23 6 2.8950 -3.0371 4.3975 24 6 4.0352 -2.8866 3.4220 25 7 4.1711 -1.4786 3.0342 26 6 5.3780 -0.8818 2.9736 27 6 6.6099 -1.6259 3.4209 28 8 5.4727 0.2540 2.5591 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0091 0.2542 -0.9960 31 1 3.0098 -0.9883 0.2785 32 1 3.3987 5.2769 1.6790 33 1 1.0877 -0.3277 3.7278 34 1 2.5448 0.0340 4.6786 35 1 0.2458 -1.4410 5.7295 36 1 0.0165 -3.5913 6.8933 37 1 1.6408 -5.3981 6.4687 38 1 3.4747 -5.0424 4.8717 39 1 3.8363 -3.4893 2.5359 40 1 4.9595 -3.2246 3.8906 41 1 6.7303 -2.5253 2.8172 42 1 6.5058 -1.9035 4.4699 43 1 7.4844 -0.9867 3.2998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368533940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:24 Heat of formation + Delta-G solvation = 27.551647 kcal Electronic energy + Delta-G solvation = -29028.663107 eV Core-core repulsion = 25233.909022 eV Total energy + Delta-G solvation = -3794.754085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 4.02 seconds Orbital eigenvalues (eV) -42.17393 -40.33785 -39.69655 -37.07367 -36.83142 -34.71145 -34.10331 -33.25925 -32.39582 -31.40632 -29.78864 -28.51679 -26.96842 -26.61601 -24.74132 -23.18693 -22.04228 -21.85558 -19.80282 -19.45095 -19.07678 -17.95618 -17.79077 -17.53307 -17.07919 -16.67655 -16.30370 -15.92183 -15.67718 -15.66290 -15.57797 -15.18476 -14.71538 -14.58057 -14.54711 -14.28330 -14.10231 -13.99937 -13.62553 -13.55760 -13.26587 -13.14489 -13.02035 -12.90892 -12.52089 -12.50249 -12.17338 -12.05844 -11.89290 -11.45300 -11.13343 -10.89281 -10.45722 -10.30437 -9.90292 -9.67565 -9.59839 -9.48162 -8.42368 -6.14739 0.40620 0.46234 1.12468 1.24894 1.40240 1.60601 1.69585 1.75246 1.91033 2.27259 2.48420 2.66184 2.82070 3.12403 3.54696 3.57482 3.70170 3.76929 3.81137 3.87847 4.00064 4.08007 4.26458 4.33241 4.37188 4.43715 4.47551 4.53691 4.60744 4.64621 4.70986 4.73808 4.79026 5.03457 5.07956 5.09153 5.13231 5.30429 5.56328 5.62664 5.65257 5.71143 5.80898 6.10602 6.43003 6.68055 6.76211 6.95322 7.28318 7.33459 7.94925 8.67636 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.005549 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.699953 B = 5044.498484 C = 5677.885947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.232 4.232 3 C 0.206 3.794 4 N -0.478 5.478 5 C -0.328 4.328 6 H 0.063 0.937 7 C 0.043 3.957 8 N -0.917 5.917 9 Si 0.958 3.042 10 H -0.284 1.284 11 H -0.306 1.306 12 H -0.258 1.258 13 C 0.487 3.513 14 O -0.565 6.565 15 C 0.134 3.866 16 H 0.107 0.893 17 C -0.082 4.082 18 C -0.085 4.085 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.106 4.106 24 C 0.147 3.853 25 N -0.609 5.609 26 C 0.479 3.521 27 C -0.154 4.154 28 O -0.548 6.548 29 H 0.250 0.750 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.269 0.731 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -27.699 7.747 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.233 4.233 3 C 0.084 3.916 4 N -0.202 5.202 5 C -0.455 4.455 6 H 0.081 0.919 7 C -0.160 4.160 8 N -0.556 5.556 9 Si 0.788 3.212 10 H -0.211 1.211 11 H -0.235 1.235 12 H -0.182 1.182 13 C 0.278 3.722 14 O -0.447 6.447 15 C 0.027 3.973 16 H 0.124 0.876 17 C -0.121 4.121 18 C -0.085 4.085 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.107 4.107 24 C 0.027 3.973 25 N -0.346 5.346 26 C 0.269 3.731 27 C -0.212 4.212 28 O -0.424 6.424 29 H 0.267 0.733 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.902 -26.486 7.930 27.921 hybrid contribution -0.774 1.458 0.322 1.682 sum -4.676 -25.028 8.252 26.765 Atomic orbital electron populations 1.25680 0.96624 0.99301 0.99069 1.24121 0.95685 1.01564 1.01940 1.18719 0.84008 0.93418 0.95431 1.43581 1.59348 1.10794 1.06458 1.18612 1.35879 0.81505 1.09551 0.91914 1.25878 0.97742 0.94342 0.98034 1.69849 1.40736 1.02717 1.42248 0.85614 0.78221 0.76402 0.80965 1.21123 1.23503 1.18191 1.20294 0.78945 0.89497 0.83415 1.90483 1.47456 1.52910 1.53803 1.20958 0.87504 0.90984 0.97901 0.87585 1.20504 0.99465 0.96357 0.95758 1.19350 0.96837 0.93711 0.98606 1.21289 0.97930 0.98887 0.97305 1.21360 1.00211 0.92720 0.99472 1.21487 0.94316 0.99854 0.98018 1.21351 0.99234 0.95893 0.95711 1.19996 0.96762 0.94532 0.99400 1.20999 0.98854 0.79411 0.98076 1.48180 1.04029 1.12900 1.69474 1.22101 0.86150 0.86954 0.77885 1.21920 0.92387 1.02272 1.04671 1.91039 1.85041 1.20396 1.45875 0.73333 0.88178 0.87386 0.92210 0.90810 0.92760 0.86653 0.83971 0.82723 0.81946 0.87139 0.84721 0.85437 0.87144 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.98 19.25 74.32 1.43 -4.55 16 2 C -0.23 -8.66 13.05 31.12 0.41 -8.26 16 3 C 0.21 8.23 5.49 84.57 0.46 8.70 16 4 N -0.48 -25.19 2.14 -645.42 -1.38 -26.57 16 5 C -0.33 -20.78 9.68 84.04 0.81 -19.96 16 6 H 0.06 4.21 8.06 -2.91 -0.02 4.18 16 7 C 0.04 2.82 4.85 84.93 0.41 3.24 16 8 N -0.92 -63.11 13.96 21.66 0.30 -62.81 16 9 Si 0.96 55.72 24.81 68.60 1.70 57.42 16 10 H -0.28 -17.61 6.28 99.48 0.62 -16.99 16 11 H -0.31 -17.12 7.11 99.48 0.71 -16.41 16 12 H -0.26 -13.83 7.11 99.48 0.71 -13.12 16 13 C 0.49 25.19 2.52 87.66 0.22 25.41 16 14 O -0.56 -35.12 9.72 20.46 0.20 -34.92 16 15 C 0.13 5.08 2.67 43.87 0.12 5.20 16 16 H 0.11 3.57 5.44 -2.38 -0.01 3.55 16 17 C -0.08 -2.99 5.14 29.58 0.15 -2.84 16 18 C -0.08 -2.28 5.76 -19.85 -0.11 -2.39 16 19 C -0.14 -3.16 9.59 22.37 0.21 -2.95 16 20 C -0.12 -2.00 10.04 22.20 0.22 -1.78 16 21 C -0.12 -1.53 10.05 22.21 0.22 -1.31 16 22 C -0.10 -1.35 9.62 22.35 0.22 -1.13 16 23 C -0.11 -2.11 5.82 -19.82 -0.12 -2.23 16 24 C 0.15 2.55 6.10 85.63 0.52 3.07 16 25 N -0.61 -18.70 2.94 -805.21 -2.37 -21.07 16 26 C 0.48 17.14 7.72 87.66 0.68 17.81 16 27 C -0.15 -3.19 8.71 71.24 0.62 -2.57 16 28 O -0.55 -28.55 12.79 20.50 0.26 -28.29 16 29 H 0.25 5.43 7.80 -4.41 -0.03 5.39 16 30 H 0.10 3.85 8.01 -2.39 -0.02 3.83 16 31 H 0.11 3.52 6.45 -2.39 -0.02 3.51 16 32 H 0.27 17.50 8.31 -92.71 -0.77 16.73 16 33 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 34 H 0.05 2.37 7.49 -2.38 -0.02 2.36 16 35 H 0.12 2.66 8.05 -2.91 -0.02 2.64 16 36 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.16 0.86 8.05 -2.91 -0.02 0.83 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.14 1.33 6.17 -2.38 -0.01 1.32 16 41 H 0.13 1.52 7.93 -2.39 -0.02 1.50 16 42 H 0.11 1.71 7.79 -2.39 -0.02 1.69 16 43 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -99.39 352.94 6.14 -93.26 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.94 Total: 9.51 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.48 Total: 13.47 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -3.45 Total: -110.45 kcal Atomic # 8 Polarization: -63.67 SS G_CDS: 0.46 Total: -63.21 kcal Atomic # 14 Polarization: 55.72 SS G_CDS: 1.70 Total: 57.42 kcal Total: -99.39 6.14 -93.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368533940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.807 kcal (2) G-P(sol) polarization free energy of solvation -99.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds