Wall clock time and date at job start Fri Apr 10 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 O 1.42897 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.35459 * 116.99816 * 180.02562 * 4 3 2 6 6 C 1.39135 * 119.87122 * 0.02562 * 5 4 3 7 7 C 1.36149 * 121.83258 * 180.02562 * 6 5 4 8 8 C 1.40939 * 120.98416 * 359.97438 * 7 6 5 9 9 C 1.40335 * 121.09361 * 180.02562 * 8 7 6 10 10 C 1.36538 * 119.81323 * 180.02562 * 9 8 7 11 11 C 1.38968 * 120.94466 * 0.02562 * 10 9 8 12 12 C 1.37760 * 120.67542 * 359.93363 * 11 10 9 13 13 C 1.39704 * 119.53696 * 0.09116 * 12 11 10 14 14 C 1.40951 * 119.87381 * 180.02562 * 5 4 3 15 15 C 1.41400 * 120.78592 * 0.02562 * 14 5 4 16 16 N 1.31235 * 119.99910 * 0.02562 * 15 14 5 17 17 N 1.40109 * 119.99928 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00037 * 179.97438 * 17 16 15 19 19 O 1.22105 * 120.00173 * 0.02562 * 18 17 16 20 20 C 1.39739 * 120.00103 * 180.02562 * 18 17 16 21 21 H 1.07998 * 120.00388 * 359.97438 * 20 18 17 22 22 C 1.40054 * 120.00335 * 180.02562 * 20 18 17 23 23 N 1.30702 * 119.99782 * 359.97438 * 22 20 18 24 24 Si 1.86792 * 120.00460 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46999 * 89.99714 * 24 22 20 26 26 H 1.48501 * 109.47315 * 209.99985 * 24 22 20 27 27 H 1.48506 * 109.47032 * 330.00027 * 24 22 20 28 28 H 1.08992 * 109.46885 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47128 * 299.99854 * 1 2 3 31 31 H 1.08999 * 109.47128 * 240.00146 * 2 1 3 32 32 H 1.09000 * 109.47192 * 119.99547 * 2 1 3 33 33 H 1.08999 * 109.46677 * 59.99839 * 3 2 1 34 34 H 1.08998 * 109.47221 * 300.00426 * 3 2 1 35 35 H 1.07996 * 119.08642 * 359.71763 * 6 5 4 36 36 H 1.08000 * 119.51111 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.09739 * 359.97438 * 9 8 7 38 38 H 1.08001 * 119.52661 * 179.97438 * 10 9 8 39 39 H 1.07996 * 119.65766 * 179.97438 * 11 10 9 40 40 H 1.08007 * 120.23463 * 180.02562 * 12 11 10 41 41 H 1.08003 * 119.99752 * 179.97438 * 15 14 5 42 42 H 0.97002 * 119.99750 * 0.02562 * 17 16 15 43 43 H 0.96999 * 120.00017 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0839 2.6495 -0.0001 6 6 3.3235 3.8147 0.0014 7 6 3.8997 5.0483 0.0014 8 6 5.3015 5.1943 0.0004 9 6 5.8978 6.4646 0.0009 10 6 7.2586 6.5757 -0.0007 11 6 8.0678 5.4460 -0.0034 12 6 7.5138 4.1847 -0.0031 13 6 6.1240 4.0429 -0.0021 14 6 5.4917 2.7203 -0.0012 15 6 6.2754 1.5434 -0.0034 16 7 5.6931 0.3673 -0.0048 17 7 6.4698 -0.7989 -0.0075 18 6 5.8718 -2.0067 -0.0085 19 8 4.6533 -2.0847 -0.0076 20 6 6.6464 -3.1698 -0.0106 21 1 7.7241 -3.1009 -0.0118 22 6 6.0250 -4.4250 -0.0122 23 7 4.7207 -4.5085 -0.0112 24 14 7.0603 -5.9797 -0.0157 25 1 7.3360 -6.3941 1.3834 26 1 6.3249 -7.0626 -0.7169 27 1 8.3434 -5.7185 -0.7165 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 2.2462 3.7385 -0.0024 36 1 3.2732 5.9280 0.0022 37 1 5.2821 7.3519 0.0017 38 1 7.7127 7.5557 -0.0007 39 1 9.1420 5.5580 -0.0050 40 1 8.1495 3.3115 -0.0048 41 1 7.3532 1.6124 -0.0046 42 1 7.4378 -0.7369 -0.0079 43 1 4.2903 -5.3778 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409013552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:40 Heat of formation + Delta-G solvation = 11.092871 kcal Electronic energy + Delta-G solvation = -26732.155829 eV Core-core repulsion = 22936.688038 eV Total energy + Delta-G solvation = -3795.467792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.32655 -38.68108 -37.49842 -35.72216 -35.02647 -33.47638 -32.89955 -32.32861 -30.49114 -29.73881 -28.44324 -26.57159 -26.08159 -23.90299 -22.98479 -22.35801 -21.20332 -20.25813 -19.41276 -18.12231 -17.62136 -17.17638 -16.51653 -15.89129 -15.56470 -15.51714 -15.23321 -14.43189 -14.20738 -13.98182 -13.92186 -13.42314 -13.26032 -13.18688 -12.98612 -12.92433 -12.65026 -12.55971 -11.76327 -11.72865 -11.63519 -11.39226 -11.29515 -11.07400 -10.92816 -10.88834 -10.62665 -10.60498 -10.45569 -10.34093 -10.16018 -9.53542 -9.21767 -8.94993 -8.30767 -8.02428 -7.64982 -6.69696 -6.35144 -4.90832 0.42545 1.19037 1.84051 2.83628 3.06086 3.12547 3.16239 3.39536 3.50454 3.86243 4.16871 4.27317 4.50291 4.67878 4.83123 4.93763 4.95288 5.11619 5.17468 5.21713 5.22769 5.36966 5.39413 5.46611 5.62383 5.63386 5.73836 5.85896 5.87362 5.92970 5.93999 6.07373 6.19271 6.26088 6.29100 6.49086 6.52205 6.54166 6.59372 6.68738 6.81697 6.99557 7.00210 7.23787 7.86558 7.93582 8.04044 8.79402 8.83275 9.39688 10.42743 10.74624 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003488 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.806806 B = 8026.485576 C =10270.543871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.058 3.942 4 O -0.257 6.257 5 C 0.148 3.852 6 C -0.183 4.183 7 C -0.078 4.078 8 C -0.079 4.079 9 C -0.096 4.096 10 C -0.135 4.135 11 C -0.113 4.113 12 C -0.111 4.111 13 C -0.001 4.001 14 C -0.062 4.062 15 C 0.007 3.993 16 N -0.151 5.151 17 N -0.589 5.589 18 C 0.558 3.442 19 O -0.548 6.548 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.089 3.911 23 N -0.743 5.743 24 Si 0.915 3.085 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.263 1.263 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.365 0.635 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 18.396 0.021 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.017 4.017 4 O -0.166 6.166 5 C 0.096 3.904 6 C -0.201 4.201 7 C -0.097 4.097 8 C -0.079 4.079 9 C -0.114 4.114 10 C -0.153 4.153 11 C -0.131 4.131 12 C -0.129 4.129 13 C -0.004 4.004 14 C -0.065 4.065 15 C -0.197 4.197 16 N 0.035 4.965 17 N -0.335 5.335 18 C 0.367 3.633 19 O -0.427 6.427 20 C -0.573 4.573 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.370 5.370 24 Si 0.739 3.261 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.187 1.187 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.120 0.880 42 H 0.200 0.800 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.168 17.267 0.015 17.403 hybrid contribution 1.772 -0.206 0.004 1.784 sum -0.396 17.061 0.019 17.066 Atomic orbital electron populations 1.21676 0.95231 1.02224 1.01059 1.21383 0.94473 0.94279 1.05585 1.22903 0.79456 0.99413 0.99960 1.86517 1.19950 1.24422 1.85749 1.19424 0.91469 0.84873 0.94667 1.20910 1.00266 0.92356 1.06591 1.20830 0.93364 0.96925 0.98626 1.17864 0.93185 0.92827 1.04072 1.20979 0.95050 0.95835 0.99509 1.20747 0.93765 0.98476 1.02342 1.21114 0.99712 0.92270 1.00027 1.21168 0.93535 0.97719 1.00450 1.18566 0.92957 0.90480 0.98359 1.17728 0.89043 0.90895 1.08871 1.22484 0.96721 0.90856 1.09657 1.75466 1.24806 0.93305 1.02906 1.48220 1.06609 1.03215 1.75439 1.16477 0.88726 0.79539 0.78592 1.90749 1.13724 1.84678 1.53531 1.19546 0.94398 0.90139 1.53233 0.91344 1.25722 0.94895 1.00355 0.92489 1.70068 1.09418 1.25618 1.31892 0.86250 0.80395 0.80419 0.79056 1.19482 1.20190 1.18695 0.93051 0.91858 0.93058 0.90104 0.90115 0.92868 0.92878 0.85428 0.85669 0.85937 0.86367 0.86093 0.85413 0.88047 0.80029 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -2.06 6.30 -26.72 -0.17 -2.23 16 3 C 0.06 0.92 4.72 37.16 0.18 1.09 16 4 O -0.26 -5.13 7.92 -18.07 -0.14 -5.27 16 5 C 0.15 2.58 6.72 -38.22 -0.26 2.33 16 6 C -0.18 -2.50 8.90 -40.00 -0.36 -2.85 16 7 C -0.08 -0.93 9.71 -39.31 -0.38 -1.31 16 8 C -0.08 -1.03 5.74 -106.84 -0.61 -1.64 16 9 C -0.10 -1.00 9.76 -39.41 -0.38 -1.39 16 10 C -0.14 -1.33 9.95 -39.92 -0.40 -1.73 16 11 C -0.11 -1.19 10.02 -39.49 -0.40 -1.59 16 12 C -0.11 -1.41 9.49 -39.21 -0.37 -1.78 16 13 C 0.00 -0.02 5.90 -104.73 -0.62 -0.64 16 14 C -0.06 -1.09 5.94 -104.29 -0.62 -1.71 16 15 C 0.01 0.14 10.21 -16.60 -0.17 -0.03 16 16 N -0.15 -3.59 8.84 31.02 0.27 -3.31 16 17 N -0.59 -14.57 6.26 28.74 0.18 -14.39 16 18 C 0.56 16.36 7.62 -15.70 -0.12 16.24 16 19 O -0.55 -18.02 15.17 4.82 0.07 -17.94 16 20 C -0.54 -14.97 9.20 -38.34 -0.35 -15.32 16 21 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 22 C 0.09 2.42 5.49 -17.35 -0.10 2.32 16 23 N -0.74 -21.61 11.69 55.55 0.65 -20.96 16 24 Si 0.91 19.50 29.56 -169.99 -5.02 14.47 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.05 0.72 7.64 -51.93 -0.40 0.32 16 34 H 0.05 0.72 7.63 -51.93 -0.40 0.32 16 35 H 0.13 1.45 6.18 -52.49 -0.32 1.12 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.48 6.41 -52.48 -0.34 1.14 16 41 H 0.10 1.64 6.39 -52.48 -0.34 1.31 16 42 H 0.36 7.66 8.62 -182.59 -1.57 6.09 16 43 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -35.61 368.30 -9.91 -45.52 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.71 Total: 8.08 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -4.76 Total: -11.75 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 1.10 Total: -38.66 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.61 -9.91 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409013552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.609 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds