Wall clock time and date at job start Fri Apr 10 2020 18:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00161 * 2 1 4 4 O 1.20826 * 119.99647 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99984 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47279 * 54.99877 * 5 3 2 7 7 C 1.52997 * 109.46929 * 294.99643 * 5 3 2 8 8 N 1.46509 * 109.46837 * 180.02562 * 7 5 3 9 9 C 1.34777 * 119.99703 * 180.02562 * 8 7 5 10 10 O 1.21589 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.40193 * 119.99728 * 179.97438 * 11 9 8 13 13 C 1.40401 * 125.97600 * 0.02562 * 12 11 9 14 14 C 1.35244 * 107.86868 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85999 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97624 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.46991 * 125.02899 * 16 15 14 18 18 H 1.08002 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00239 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99973 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46775 * 90.00171 * 21 19 17 23 23 H 1.48496 * 109.47273 * 209.99980 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00230 * 21 19 17 25 25 N 1.31214 * 125.96986 * 179.97438 * 12 11 9 26 26 O 1.42899 * 109.46848 * 174.99665 * 5 3 2 27 27 C 1.42899 * 114.00071 * 269.99753 * 26 5 3 28 28 H 1.08998 * 109.47035 * 60.00657 * 1 2 3 29 29 H 1.09004 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47620 * 300.00544 * 1 2 3 31 31 H 1.09000 * 109.47022 * 60.00370 * 7 5 3 32 32 H 1.08996 * 109.47225 * 299.99560 * 7 5 3 33 33 H 0.96999 * 119.99737 * 359.97438 * 8 7 5 34 34 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 35 35 H 1.07998 * 126.06449 * 0.02562 * 13 12 11 36 36 H 1.07999 * 126.07092 * 180.02562 * 14 13 12 37 37 H 1.09003 * 109.47538 * 245.02631 * 16 15 14 38 38 H 1.08999 * 109.47417 * 5.03540 * 16 15 14 39 39 H 0.96997 * 120.00075 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47205 * 300.00243 * 27 26 5 41 41 H 1.09000 * 109.47465 * 60.00303 * 27 26 5 42 42 H 1.08999 * 109.47660 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9604 0.7049 -0.8410 7 6 4.1069 0.6930 1.3083 8 7 5.5700 0.7702 1.3091 9 6 6.2683 0.3127 2.3672 10 8 5.6841 -0.1636 3.3213 11 7 7.6142 0.3833 2.3677 12 6 8.3406 -0.0921 3.4686 13 6 7.7976 -0.6633 4.6305 14 6 8.8226 -0.9918 5.4494 15 7 9.9722 -0.6444 4.8335 16 6 11.3237 -0.8233 5.3695 17 6 12.1547 -1.6063 4.3858 18 1 11.7195 -1.9371 3.4543 19 6 13.4703 -1.9003 4.6748 20 7 14.1952 -2.5840 3.8166 21 14 14.2232 -1.3274 6.2856 22 1 14.0215 -2.3693 7.3244 23 1 15.6771 -1.0920 6.0965 24 1 13.5694 -0.0656 6.7166 25 7 9.6468 -0.0818 3.5927 26 8 3.9718 2.6400 -0.1170 27 6 4.1432 3.0813 -1.4653 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.7976 -0.3484 1.3980 32 1 3.7130 1.2629 2.1498 33 1 6.0360 1.1499 0.5478 34 1 8.0802 0.7636 1.6068 35 1 6.7478 -0.8143 4.8339 36 1 8.7365 -1.4514 6.4230 37 1 11.7808 0.1522 5.5357 38 1 11.2714 -1.3657 6.3135 39 1 15.1209 -2.7905 4.0198 40 1 4.9080 2.4756 -1.9514 41 1 3.2013 2.9781 -2.0040 42 1 4.4515 4.1268 -1.4691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432947511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:32 Heat of formation + Delta-G solvation = -57.047337 kcal Electronic energy + Delta-G solvation = -26747.175739 eV Core-core repulsion = 22537.903903 eV Total energy + Delta-G solvation = -4209.271836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 7.11 seconds Orbital eigenvalues (eV) -41.20665 -40.73541 -39.64876 -38.56108 -36.76448 -35.24250 -34.61767 -33.26787 -31.56388 -30.74389 -29.34993 -28.15115 -27.18437 -26.72738 -24.68200 -22.69003 -21.67690 -21.56014 -20.41747 -19.87295 -18.60383 -18.00860 -17.75431 -17.29251 -17.02006 -16.68925 -16.48152 -15.80110 -15.57250 -15.37254 -15.00659 -14.72411 -14.39945 -14.23582 -13.87453 -13.67785 -13.57456 -13.20904 -13.02093 -12.56425 -12.51359 -12.30895 -12.29008 -12.12195 -11.79774 -11.44915 -11.28426 -11.14936 -10.77219 -10.63497 -10.31364 -10.11373 -9.98554 -9.76381 -9.51191 -9.34641 -8.75183 -8.14848 -7.45685 -6.22109 -4.24133 1.54172 1.97416 2.36058 2.61057 3.01638 3.08289 3.16705 3.24003 3.24789 3.51900 3.80735 4.07777 4.15435 4.21215 4.24368 4.35433 4.65613 4.74102 4.77100 4.87156 5.05879 5.08305 5.13813 5.22548 5.31626 5.46567 5.71685 5.81096 6.08029 6.19478 6.28180 6.35187 6.48939 6.58083 6.73292 6.94007 7.20034 7.29440 7.44879 7.83863 7.88312 8.35691 8.53967 8.61404 8.87947 9.33099 10.90589 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.001974 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.314499 B =14184.249887 C =14586.810689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.442 3.558 4 O -0.485 6.485 5 C 0.089 3.911 6 H 0.111 0.889 7 C 0.153 3.847 8 N -0.739 5.739 9 C 0.717 3.283 10 O -0.566 6.566 11 N -0.641 5.641 12 C 0.279 3.721 13 C -0.282 4.282 14 C 0.050 3.950 15 N -0.321 5.321 16 C 0.232 3.768 17 C -0.533 4.533 18 H 0.086 0.914 19 C 0.075 3.925 20 N -0.888 5.888 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.300 5.300 26 O -0.348 6.348 27 C 0.023 3.977 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.400 0.600 34 H 0.408 0.592 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.268 0.732 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.520 7.375 -9.929 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.282 3.718 4 O -0.371 6.371 5 C 0.028 3.972 6 H 0.128 0.872 7 C 0.028 3.972 8 N -0.396 5.396 9 C 0.416 3.584 10 O -0.441 6.441 11 N -0.291 5.291 12 C 0.024 3.976 13 C -0.313 4.313 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.113 3.887 17 C -0.571 4.571 18 H 0.104 0.896 19 C -0.128 4.128 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.130 5.130 26 O -0.265 6.265 27 C -0.074 4.074 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.235 0.765 34 H 0.243 0.757 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.868 7.582 -9.419 26.756 hybrid contribution -0.002 0.339 0.012 0.339 sum -23.870 7.921 -9.408 26.851 Atomic orbital electron populations 1.23337 0.75702 1.04129 1.02717 1.86527 1.23943 1.32883 1.83783 1.24232 0.92284 0.81992 0.73292 1.90708 1.66509 1.36324 1.43539 1.21921 0.87139 0.86358 1.01762 0.87170 1.21116 0.79480 1.01921 0.94639 1.44702 1.06156 1.67989 1.20764 1.15489 0.80740 0.79181 0.82941 1.90880 1.68755 1.50185 1.34277 1.41318 1.04298 1.64107 1.19413 1.18772 0.90124 0.99963 0.88700 1.21536 1.00852 1.14157 0.94779 1.22552 0.85880 1.01648 0.99793 1.48580 1.07022 1.43828 1.10807 1.20035 0.75518 0.98194 0.94947 1.21115 0.95861 1.34742 1.05409 0.89639 1.24837 0.96560 0.94484 0.96938 1.69873 1.08750 1.38459 1.35485 0.86905 0.79411 0.79805 0.83972 1.19726 1.20576 1.18853 1.77386 1.10305 1.23418 1.01930 1.88135 1.86500 1.24446 1.27451 1.23026 1.00346 1.01530 0.82453 0.91849 0.87652 0.91549 0.88279 0.89813 0.76535 0.75686 0.81964 0.81427 0.94070 0.93334 0.92213 0.93044 0.93552 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.70 10.56 -39.25 -0.41 -3.11 16 3 C 0.44 3.87 7.24 36.00 0.26 4.14 16 4 O -0.49 -5.68 16.26 -25.46 -0.41 -6.09 16 5 C 0.09 0.62 2.71 -27.89 -0.08 0.55 16 6 H 0.11 0.46 7.79 -51.93 -0.40 0.05 16 7 C 0.15 1.32 5.34 -4.04 -0.02 1.30 16 8 N -0.74 -7.00 5.45 -65.22 -0.36 -7.36 16 9 C 0.72 10.17 8.53 -86.92 -0.74 9.43 16 10 O -0.57 -9.88 13.47 5.29 0.07 -9.81 16 11 N -0.64 -9.72 5.46 -15.51 -0.08 -9.80 16 12 C 0.28 5.53 8.11 -154.36 -1.25 4.28 16 13 C -0.28 -5.49 9.61 -39.83 -0.38 -5.88 16 14 C 0.05 0.97 11.44 -17.24 -0.20 0.78 16 15 N -0.32 -7.26 3.67 -62.56 -0.23 -7.49 16 16 C 0.23 5.49 5.33 -5.19 -0.03 5.47 16 17 C -0.53 -15.00 9.79 -34.44 -0.34 -15.34 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 19 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 21 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 25 N -0.30 -6.83 12.42 31.44 0.39 -6.44 16 26 O -0.35 -2.87 9.63 -55.14 -0.53 -3.40 16 27 C 0.02 0.12 10.81 101.05 1.09 1.21 16 28 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 29 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 2.69 8.36 -40.82 -0.34 2.35 16 34 H 0.41 4.95 8.84 -40.82 -0.36 4.59 16 35 H 0.16 3.09 5.91 -52.49 -0.31 2.78 16 36 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 37 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 38 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.05 0.17 8.08 -51.93 -0.42 -0.25 16 41 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -37.34 369.11 -6.18 -43.52 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.57 Total: 5.56 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.71 Total: 9.19 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.49 Total: -56.86 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.29 Total: -22.41 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.34 -6.18 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432947511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.525 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.11 seconds