Wall clock time and date at job start Fri Apr 10 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00161 * 2 1 4 4 O 1.20826 * 119.99647 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99984 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47279 * 54.99877 * 5 3 2 7 7 C 1.52997 * 109.46929 * 294.99643 * 5 3 2 8 8 N 1.46509 * 109.46837 * 180.02562 * 7 5 3 9 9 C 1.34777 * 119.99703 * 180.02562 * 8 7 5 10 10 O 1.21589 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.40193 * 119.99728 * 179.97438 * 11 9 8 13 13 C 1.40401 * 125.97600 * 0.02562 * 12 11 9 14 14 C 1.35244 * 107.86868 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85999 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97624 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.46991 * 125.02899 * 16 15 14 18 18 H 1.08002 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00239 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99973 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46775 * 90.00171 * 21 19 17 23 23 H 1.48496 * 109.47273 * 209.99980 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00230 * 21 19 17 25 25 N 1.31214 * 125.96986 * 179.97438 * 12 11 9 26 26 O 1.42899 * 109.46848 * 174.99665 * 5 3 2 27 27 C 1.42899 * 114.00071 * 269.99753 * 26 5 3 28 28 H 1.08998 * 109.47035 * 60.00657 * 1 2 3 29 29 H 1.09004 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47620 * 300.00544 * 1 2 3 31 31 H 1.09000 * 109.47022 * 60.00370 * 7 5 3 32 32 H 1.08996 * 109.47225 * 299.99560 * 7 5 3 33 33 H 0.96999 * 119.99737 * 359.97438 * 8 7 5 34 34 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 35 35 H 1.07998 * 126.06449 * 0.02562 * 13 12 11 36 36 H 1.07999 * 126.07092 * 180.02562 * 14 13 12 37 37 H 1.09003 * 109.47538 * 245.02631 * 16 15 14 38 38 H 1.08999 * 109.47417 * 5.03540 * 16 15 14 39 39 H 0.96997 * 120.00075 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47205 * 300.00243 * 27 26 5 41 41 H 1.09000 * 109.47465 * 60.00303 * 27 26 5 42 42 H 1.08999 * 109.47660 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9604 0.7049 -0.8410 7 6 4.1069 0.6930 1.3083 8 7 5.5700 0.7702 1.3091 9 6 6.2683 0.3127 2.3672 10 8 5.6841 -0.1636 3.3213 11 7 7.6142 0.3833 2.3677 12 6 8.3406 -0.0921 3.4686 13 6 7.7976 -0.6633 4.6305 14 6 8.8226 -0.9918 5.4494 15 7 9.9722 -0.6444 4.8335 16 6 11.3237 -0.8233 5.3695 17 6 12.1547 -1.6063 4.3858 18 1 11.7195 -1.9371 3.4543 19 6 13.4703 -1.9003 4.6748 20 7 14.1952 -2.5840 3.8166 21 14 14.2232 -1.3274 6.2856 22 1 14.0215 -2.3693 7.3244 23 1 15.6771 -1.0920 6.0965 24 1 13.5694 -0.0656 6.7166 25 7 9.6468 -0.0818 3.5927 26 8 3.9718 2.6400 -0.1170 27 6 4.1432 3.0813 -1.4653 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.7976 -0.3484 1.3980 32 1 3.7130 1.2629 2.1498 33 1 6.0360 1.1499 0.5478 34 1 8.0802 0.7636 1.6068 35 1 6.7478 -0.8143 4.8339 36 1 8.7365 -1.4514 6.4230 37 1 11.7808 0.1522 5.5357 38 1 11.2714 -1.3657 6.3135 39 1 15.1209 -2.7905 4.0198 40 1 4.9080 2.4756 -1.9514 41 1 3.2013 2.9781 -2.0040 42 1 4.4515 4.1268 -1.4691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432947511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:30 Heat of formation + Delta-G solvation = -85.592298 kcal Electronic energy + Delta-G solvation = -26748.413541 eV Core-core repulsion = 22537.903903 eV Total energy + Delta-G solvation = -4210.509638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.23072 -41.82190 -40.86153 -39.18527 -37.45862 -36.38040 -35.80967 -35.16065 -33.14082 -31.73211 -30.89859 -29.01213 -28.52404 -27.30631 -25.55632 -24.39498 -22.92913 -22.23270 -21.85199 -21.25132 -19.54829 -19.07743 -18.80643 -18.44260 -18.22346 -17.80982 -17.23814 -17.07337 -16.68295 -16.25837 -16.12525 -15.90294 -15.50841 -15.36417 -15.10497 -14.74667 -14.46484 -14.32256 -14.27128 -14.01668 -13.79051 -13.72878 -13.02799 -12.96620 -12.84229 -12.51222 -12.35796 -12.25542 -12.07060 -11.85908 -11.80988 -11.59944 -11.45282 -11.14942 -10.85549 -10.84329 -10.29658 -9.70454 -9.00665 -8.34894 -6.44686 0.80783 1.08535 1.16276 1.38803 1.41531 1.50054 1.52551 1.71809 2.10583 2.31270 2.41896 2.53356 2.97603 3.13388 3.46763 3.67946 3.74231 3.97071 4.24968 4.27824 4.32285 4.37842 4.44821 4.51986 4.61228 4.64423 4.71878 4.81040 4.86188 4.88857 4.97565 5.10399 5.22684 5.26587 5.36449 5.79365 5.81080 5.95508 6.05486 6.44976 6.56586 6.60510 6.72895 7.14408 7.18507 7.40927 8.82063 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.001974 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.314499 B =14184.249887 C =14586.810689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.444 3.556 4 O -0.520 6.520 5 C 0.096 3.904 6 H 0.146 0.854 7 C 0.154 3.846 8 N -0.715 5.715 9 C 0.716 3.284 10 O -0.598 6.598 11 N -0.636 5.636 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.060 3.940 15 N -0.346 5.346 16 C 0.239 3.761 17 C -0.545 4.545 18 H 0.027 0.973 19 C 0.013 3.987 20 N -0.942 5.942 21 Si 0.955 3.045 22 H -0.254 1.254 23 H -0.282 1.282 24 H -0.240 1.240 25 N -0.349 5.349 26 O -0.371 6.371 27 C 0.017 3.983 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.417 0.583 34 H 0.421 0.579 35 H 0.169 0.831 36 H 0.210 0.790 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.272 0.728 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.208 7.764 -8.899 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.286 3.714 4 O -0.408 6.408 5 C 0.036 3.964 6 H 0.163 0.837 7 C 0.030 3.970 8 N -0.373 5.373 9 C 0.416 3.584 10 O -0.476 6.476 11 N -0.287 5.287 12 C 0.029 3.971 13 C -0.324 4.324 14 C -0.088 4.088 15 N -0.128 5.128 16 C 0.119 3.881 17 C -0.583 4.583 18 H 0.046 0.954 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.776 3.224 22 H -0.178 1.178 23 H -0.207 1.207 24 H -0.163 1.163 25 N -0.180 5.180 26 O -0.289 6.289 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.254 0.746 34 H 0.259 0.741 35 H 0.186 0.814 36 H 0.227 0.773 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.605 7.990 -8.453 27.215 hybrid contribution 0.035 0.189 -0.473 0.511 sum -24.570 8.179 -8.926 27.391 Atomic orbital electron populations 1.23597 0.74482 1.05940 1.02621 1.86526 1.25224 1.32229 1.83273 1.24562 0.92888 0.81751 0.72184 1.90693 1.67364 1.37449 1.45334 1.21928 0.86053 0.86505 1.01936 0.83674 1.21145 0.78447 1.02263 0.95150 1.44501 1.06466 1.66444 1.19852 1.15624 0.80274 0.79050 0.83485 1.90850 1.69194 1.51694 1.35851 1.41329 1.04656 1.63942 1.18806 1.19108 0.89643 0.98557 0.89786 1.21737 1.01203 1.14558 0.94917 1.23239 0.84533 1.00040 1.00963 1.48476 1.07331 1.45545 1.11433 1.19877 0.75728 0.97751 0.94707 1.21235 0.96971 1.35541 1.04532 0.95427 1.25916 0.96817 0.94194 1.01605 1.70049 1.09385 1.40267 1.38409 0.85621 0.77957 0.80552 0.78277 1.17793 1.20715 1.16283 1.77303 1.11942 1.25648 1.03095 1.88103 1.86490 1.25016 1.29253 1.23202 1.00979 1.02365 0.81320 0.91591 0.84921 0.92085 0.87597 0.91479 0.74584 0.74143 0.81414 0.77343 0.93733 0.90092 0.91935 0.90485 0.93979 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.95 10.56 -51.37 -0.54 -5.50 16 3 C 0.44 7.37 7.24 71.24 0.52 7.88 16 4 O -0.52 -12.07 16.26 28.38 0.46 -11.61 16 5 C 0.10 1.18 2.71 29.85 0.08 1.26 16 6 H 0.15 0.75 7.79 -2.38 -0.02 0.73 16 7 C 0.15 2.44 5.34 86.38 0.46 2.90 16 8 N -0.71 -12.35 5.45 -478.52 -2.61 -14.96 16 9 C 0.72 19.56 8.53 179.05 1.53 21.09 16 10 O -0.60 -20.44 13.47 -4.00 -0.05 -20.50 16 11 N -0.64 -18.85 5.46 -321.23 -1.75 -20.61 16 12 C 0.29 11.25 8.11 133.31 1.08 12.33 16 13 C -0.29 -11.15 9.61 22.11 0.21 -10.94 16 14 C 0.06 2.22 11.44 83.52 0.96 3.17 16 15 N -0.35 -15.47 3.67 -351.84 -1.29 -16.76 16 16 C 0.24 11.05 5.33 85.64 0.46 11.50 16 17 C -0.54 -31.32 9.79 25.60 0.25 -31.07 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 19 C 0.01 0.75 5.47 84.65 0.46 1.22 16 20 N -0.94 -57.83 13.96 21.44 0.30 -57.53 16 21 Si 0.95 40.60 27.47 68.60 1.88 42.49 16 22 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 25 N -0.35 -16.11 12.42 -54.43 -0.68 -16.78 16 26 O -0.37 -5.56 9.63 -129.95 -1.25 -6.81 16 27 C 0.02 0.15 10.81 113.37 1.23 1.38 16 28 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 4.62 8.36 -92.71 -0.78 3.84 16 34 H 0.42 9.92 8.84 -92.71 -0.82 9.10 16 35 H 0.17 6.23 5.91 -2.91 -0.02 6.21 16 36 H 0.21 5.64 8.06 -2.91 -0.02 5.62 16 37 H 0.04 2.02 7.20 -2.39 -0.02 2.00 16 38 H 0.08 3.21 7.50 -2.39 -0.02 3.19 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 41 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -84.76 369.11 2.32 -82.44 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.57 Total: 23.96 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 8.43 Total: 22.17 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -6.03 Total: -126.64 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.39 Total: -44.41 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.49 kcal Total: -84.76 2.32 -82.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432947511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.155 kcal (2) G-P(sol) polarization free energy of solvation -84.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds