Wall clock time and date at job start Fri Apr 10 2020 18:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36843 * 120.00304 * 2 1 4 4 H 1.08001 * 120.00129 * 145.08262 * 3 2 1 5 5 C 1.38992 * 120.00209 * 325.07997 * 3 2 1 6 6 N 1.31407 * 119.99894 * 42.52690 * 5 3 2 7 7 Si 1.86800 * 120.00159 * 222.52823 * 5 3 2 8 8 H 1.48493 * 109.47396 * 90.00012 * 7 5 3 9 9 H 1.48507 * 109.46804 * 209.99703 * 7 5 3 10 10 H 1.48493 * 109.47059 * 329.99578 * 7 5 3 11 11 C 1.34787 * 119.99672 * 180.02562 * 2 1 3 12 12 O 1.21795 * 119.99407 * 185.78699 * 11 2 1 13 13 C 1.46329 * 120.00114 * 5.78305 * 11 2 1 14 14 C 1.36496 * 125.54772 * 351.56173 * 13 11 2 15 15 C 1.40618 * 107.59787 * 180.02562 * 14 13 11 16 16 C 1.41221 * 107.30365 * 359.97438 * 15 14 13 17 17 N 1.32981 * 119.35066 * 180.02562 * 16 15 14 18 18 C 1.33052 * 121.51343 * 359.97438 * 17 16 15 19 19 C 1.40899 * 119.03142 * 179.97438 * 18 17 16 20 20 C 1.36163 * 119.54871 * 180.02562 * 19 18 17 21 21 C 1.40297 * 119.62394 * 359.82211 * 20 19 18 22 22 C 1.35077 * 120.13791 * 0.43353 * 21 20 19 23 23 N 1.36462 * 120.77281 * 359.51669 * 22 21 20 24 24 C 1.35198 * 119.26344 * 180.25620 * 23 22 21 25 25 O 1.21850 * 120.72382 * 359.97438 * 24 23 22 26 26 N 1.36692 * 107.38059 * 0.02562 * 16 15 14 27 27 C 1.46494 * 125.59370 * 180.02562 * 26 16 15 28 28 H 1.09000 * 109.47384 * 235.59886 * 1 2 3 29 29 H 1.09007 * 109.46994 * 355.60274 * 1 2 3 30 30 H 1.08997 * 109.47048 * 115.59987 * 1 2 3 31 31 H 0.96996 * 120.00158 * 180.02562 * 6 5 3 32 32 H 1.07999 * 126.20507 * 0.02562 * 14 13 11 33 33 H 1.08002 * 120.22201 * 359.97438 * 19 18 17 34 34 H 1.07994 * 120.18995 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92835 * 180.22997 * 21 20 19 36 36 H 1.08004 * 119.61105 * 179.79552 * 22 21 20 37 37 H 1.08998 * 109.47170 * 88.16420 * 27 26 16 38 38 H 1.08997 * 109.46996 * 208.16664 * 27 26 16 39 39 H 1.09006 * 109.46913 * 328.16732 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.0834 1.2692 0.5354 5 6 1.6421 2.2805 -0.6890 6 7 0.3600 2.5614 -0.6240 7 14 2.7828 3.3532 -1.7074 8 1 2.8508 2.8265 -3.0942 9 1 2.2638 4.7444 -1.7313 10 1 4.1407 3.3417 -1.1064 11 6 2.1388 -1.1673 -0.0005 12 8 3.3521 -1.1700 0.1058 13 6 1.4127 -2.4313 -0.1288 14 6 0.0558 -2.5743 -0.0913 15 6 -0.2322 -3.9415 -0.2497 16 6 1.0004 -4.6175 -0.3847 17 7 1.0055 -5.9370 -0.5497 18 6 -0.1252 -6.6371 -0.5904 19 6 -0.0588 -8.0333 -0.7681 20 6 -1.2094 -8.7601 -0.8118 21 6 -2.4455 -8.1106 -0.6757 22 6 -2.4932 -6.7708 -0.5110 23 7 -1.3468 -6.0318 -0.4647 24 6 -1.4298 -4.6933 -0.2936 25 8 -2.5127 -4.1460 -0.1817 26 7 1.9913 -3.6790 -0.3080 27 6 3.4285 -3.9470 -0.4009 28 1 -0.3634 -0.5806 0.8479 29 1 -0.3633 1.0247 0.0788 30 1 -0.3633 -0.4440 -0.9268 31 1 0.0060 3.3256 -1.1052 32 1 -0.6660 -1.7811 0.0368 33 1 0.8982 -8.5235 -0.8698 34 1 -1.1707 -9.8307 -0.9480 35 1 -3.3611 -8.6827 -0.7058 36 1 -3.4495 -6.2791 -0.4104 37 1 3.7367 -3.9180 -1.4460 38 1 3.9762 -3.1902 0.1606 39 1 3.6419 -4.9323 0.0136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439464079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:24 Heat of formation + Delta-G solvation = 90.670042 kcal Electronic energy + Delta-G solvation = -27229.983559 eV Core-core repulsion = 23334.426149 eV Total energy + Delta-G solvation = -3895.557410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.117 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -42.64145 -40.66059 -38.28063 -38.09063 -35.96035 -34.93176 -33.91972 -32.89195 -31.74731 -30.62511 -28.75367 -27.17168 -26.02462 -25.70440 -24.16937 -23.76538 -22.98665 -21.02591 -19.67737 -19.11239 -18.07254 -17.49119 -17.11651 -16.62067 -16.13382 -15.79955 -15.40680 -15.20828 -15.09332 -14.84611 -14.37690 -14.17073 -13.98981 -13.67866 -13.43441 -13.39460 -12.65939 -12.57205 -12.45936 -12.18100 -11.98023 -11.77549 -11.74960 -11.42805 -11.07043 -10.76194 -10.68329 -10.42044 -10.37908 -10.18794 -9.68368 -8.96381 -8.82114 -8.69672 -8.57725 -7.81747 -7.05951 -6.68949 -3.96273 0.12488 0.69735 1.83408 2.13709 2.35869 2.59726 2.82660 3.13815 3.24382 3.30687 3.89642 3.99208 4.02305 4.19341 4.24208 4.42471 4.55074 4.65799 4.76700 4.88731 4.99440 5.03595 5.31905 5.42308 5.57962 5.62764 5.64783 5.77763 5.84041 5.93576 6.10968 6.14603 6.30362 6.39442 6.53630 6.58246 6.66104 7.08925 7.11484 7.27767 7.62012 7.75172 7.88525 8.12397 8.41549 8.98151 9.20663 9.83602 10.27526 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.003335 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.129685 B = 8394.450086 C = 9310.270485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.412 5.412 3 C -0.338 4.338 4 H 0.105 0.895 5 C 0.068 3.932 6 N -0.823 5.823 7 Si 0.901 3.099 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.264 1.264 11 C 0.500 3.500 12 O -0.591 6.591 13 C 0.029 3.971 14 C -0.114 4.114 15 C -0.288 4.288 16 C 0.306 3.694 17 N -0.527 5.527 18 C 0.397 3.603 19 C -0.132 4.132 20 C -0.045 4.045 21 C -0.188 4.188 22 C 0.109 3.891 23 N -0.450 5.450 24 C 0.556 3.444 25 O -0.519 6.519 26 N -0.407 5.407 27 C 0.072 3.928 28 H 0.041 0.959 29 H 0.146 0.854 30 H 0.042 0.958 31 H 0.277 0.723 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.176 0.824 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -20.521 -1.382 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.128 5.128 3 C -0.463 4.463 4 H 0.122 0.878 5 C -0.142 4.142 6 N -0.457 5.457 7 Si 0.725 3.275 8 H -0.199 1.199 9 H -0.211 1.211 10 H -0.188 1.188 11 C 0.290 3.710 12 O -0.479 6.479 13 C -0.081 4.081 14 C -0.139 4.139 15 C -0.300 4.300 16 C 0.074 3.926 17 N -0.254 5.254 18 C 0.146 3.854 19 C -0.153 4.153 20 C -0.070 4.070 21 C -0.210 4.210 22 C -0.013 4.013 23 N -0.158 5.158 24 C 0.359 3.641 25 O -0.396 6.396 26 N -0.086 5.086 27 C -0.069 4.069 28 H 0.059 0.941 29 H 0.163 0.837 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.193 0.807 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.731 -19.957 -1.355 20.555 hybrid contribution -0.333 0.671 -0.535 0.920 sum -5.064 -19.287 -1.890 20.030 Atomic orbital electron populations 1.23339 0.81777 1.08630 0.97842 1.43182 1.05430 1.04098 1.60086 1.19280 1.06730 0.87449 1.32888 0.87755 1.25461 0.95660 0.97536 0.95503 1.69685 1.14679 1.26261 1.35075 0.86366 0.82030 0.77785 0.81270 1.19946 1.21079 1.18783 1.16551 0.86535 0.81759 0.86154 1.90600 1.13295 1.86423 1.57595 1.20426 0.91668 0.85711 1.10255 1.21965 0.94566 0.94729 1.02655 1.19307 0.90910 0.96874 1.22909 1.18149 0.87242 0.87327 0.99914 1.67479 1.23675 1.05765 1.28456 1.19871 0.78477 0.93674 0.93406 1.20804 1.00930 0.88430 1.05167 1.21357 0.91450 1.00992 0.93157 1.20832 0.99710 0.92800 1.07669 1.22224 0.91310 0.92703 0.95063 1.44006 1.07383 1.10230 1.54219 1.16491 0.90239 0.79227 0.78158 1.90878 1.29694 1.68337 1.50697 1.43762 1.06121 1.03907 1.54788 1.22315 0.76830 1.03786 1.03946 0.94080 0.83715 0.93977 0.91176 0.80028 0.82282 0.83634 0.82999 0.80660 0.91043 0.86623 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.01 59.84 0.48 1.09 16 2 N -0.41 -10.67 3.01 -123.82 -0.37 -11.05 16 3 C -0.34 -9.21 8.89 -15.04 -0.13 -9.34 16 4 H 0.10 2.98 7.80 -52.49 -0.41 2.57 16 5 C 0.07 1.74 5.29 -17.45 -0.09 1.65 16 6 N -0.82 -20.60 10.54 55.50 0.58 -20.02 16 7 Si 0.90 19.95 29.69 -169.99 -5.05 14.90 16 8 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.50 12.68 7.56 -13.00 -0.10 12.58 16 12 O -0.59 -16.03 14.35 5.10 0.07 -15.95 16 13 C 0.03 0.65 6.77 -82.13 -0.56 0.10 16 14 C -0.11 -2.40 8.75 -39.31 -0.34 -2.74 16 15 C -0.29 -5.70 6.13 -106.63 -0.65 -6.35 16 16 C 0.31 5.78 7.93 -155.93 -1.24 4.54 16 17 N -0.53 -8.54 10.32 -11.40 -0.12 -8.66 16 18 C 0.40 5.33 7.34 -155.78 -1.14 4.19 16 19 C -0.13 -1.16 9.95 -39.32 -0.39 -1.55 16 20 C -0.05 -0.27 10.07 -39.55 -0.40 -0.67 16 21 C -0.19 -1.19 9.99 -39.93 -0.40 -1.59 16 22 C 0.11 1.08 10.07 -16.62 -0.17 0.91 16 23 N -0.45 -6.29 2.78 -64.79 -0.18 -6.47 16 24 C 0.56 9.97 7.41 -14.84 -0.11 9.86 16 25 O -0.52 -10.07 16.68 5.05 0.08 -9.98 16 26 N -0.41 -8.09 3.22 -119.51 -0.38 -8.47 16 27 C 0.07 1.20 10.72 59.84 0.64 1.84 16 28 H 0.04 0.86 6.16 -51.93 -0.32 0.54 16 29 H 0.15 3.53 4.76 -51.92 -0.25 3.28 16 30 H 0.04 0.92 6.77 -51.93 -0.35 0.57 16 31 H 0.28 6.42 8.31 -40.82 -0.34 6.09 16 32 H 0.18 3.70 3.90 -52.49 -0.20 3.50 16 33 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.18 1.58 7.32 -52.48 -0.38 1.19 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.12 2.14 6.01 -51.93 -0.31 1.83 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -33.07 328.25 -8.49 -41.57 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.48 Total: 4.66 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: -4.60 Total: 14.53 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.47 Total: -54.67 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.16 Total: -25.94 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.05 Total: 14.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.07 -8.49 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439464079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.236 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds